Wall clock time and date at job start Tue Mar 31 2020 18:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35997 * 116.99846 * 2 1 4 4 C 1.38666 * 120.04585 * 359.97438 * 3 2 1 5 5 C 1.38229 * 120.08882 * 180.02562 * 4 3 2 6 6 C 1.38229 * 120.18169 * 359.94982 * 5 4 3 7 7 C 1.38660 * 120.08828 * 0.04186 * 6 5 4 8 8 O 1.35998 * 120.04495 * 179.97438 * 7 6 5 9 9 C 1.42898 * 116.99900 * 359.97438 * 8 7 6 10 10 C 1.38982 * 120.04534 * 179.97438 * 3 2 1 11 11 O 1.36091 * 120.08839 * 0.26138 * 10 3 2 12 12 C 1.42902 * 116.99848 * 269.71619 * 11 10 3 13 13 C 1.53039 * 109.46212 * 270.02567 * 12 11 10 14 14 C 1.53192 * 109.31239 * 178.59726 * 13 12 11 15 15 N 1.46929 * 108.75939 * 54.66285 * 14 13 12 16 16 C 1.34778 * 120.63022 * 126.36250 * 15 14 13 17 17 O 1.21689 * 120.00023 * 174.77014 * 16 15 14 18 18 C 1.46366 * 119.99974 * 354.76312 * 16 15 14 19 19 H 1.08004 * 120.00354 * 5.60331 * 18 16 15 20 20 C 1.40058 * 120.00106 * 185.60173 * 18 16 15 21 21 N 1.30668 * 119.99735 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 119.99931 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47033 * 90.00747 * 22 20 18 24 24 H 1.48499 * 109.46964 * 210.00071 * 22 20 18 25 25 H 1.48498 * 109.47544 * 330.00054 * 22 20 18 26 26 C 1.46925 * 118.73935 * 306.37620 * 15 14 13 27 27 C 1.53045 * 109.45652 * 149.97372 * 12 11 10 28 28 H 1.08999 * 109.47274 * 60.00198 * 1 2 3 29 29 H 1.09002 * 109.47140 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47293 * 299.99787 * 1 2 3 31 31 H 1.07993 * 119.95492 * 0.02562 * 4 3 2 32 32 H 1.08008 * 119.90732 * 179.97438 * 5 4 3 33 33 H 1.08001 * 119.95570 * 180.02562 * 6 5 4 34 34 H 1.08995 * 109.47091 * 299.99856 * 9 8 7 35 35 H 1.09000 * 109.47312 * 60.00299 * 9 8 7 36 36 H 1.09005 * 109.47155 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.45939 * 30.00267 * 12 11 10 38 38 H 1.08995 * 109.49871 * 298.56892 * 13 12 11 39 39 H 1.09008 * 109.49140 * 58.66453 * 13 12 11 40 40 H 1.08990 * 109.60349 * 294.87629 * 14 13 12 41 41 H 1.09005 * 109.70054 * 174.50554 * 14 13 12 42 42 H 0.96999 * 119.99732 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.58881 * 293.82866 * 26 15 14 44 44 H 1.08997 * 109.70217 * 173.46945 * 26 15 14 45 45 H 1.08993 * 109.49734 * 301.33524 * 27 12 11 46 46 H 1.08999 * 109.49902 * 61.40238 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2920 2.3753 -0.0005 5 6 1.9186 3.6074 -0.0011 6 6 3.2987 3.6852 0.0000 7 6 4.0602 2.5265 0.0007 8 8 5.4180 2.6040 0.0012 9 6 5.9930 3.9122 0.0004 10 6 3.4342 1.2856 0.0005 11 8 4.1781 0.1460 -0.0043 12 6 4.5378 -0.3993 1.2667 13 6 5.8741 0.1954 1.7169 14 6 6.2391 -0.3648 3.0952 15 7 6.2242 -1.8325 3.0279 16 6 7.2956 -2.5489 3.4220 17 8 7.2376 -3.7640 3.4515 18 6 8.5290 -1.8653 3.8143 19 1 8.5531 -0.7873 3.8752 20 6 9.6780 -2.6092 4.1109 21 7 9.6491 -3.9135 4.0367 22 14 11.2518 -1.7369 4.6122 23 1 11.2786 -1.5735 6.0880 24 1 12.4229 -2.5424 4.1822 25 1 11.3053 -0.4013 3.9652 26 6 5.0193 -2.5043 2.5224 27 6 4.6676 -1.9198 1.1507 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2135 2.3188 -0.0005 32 1 1.3281 4.5118 -0.0019 33 1 3.7844 4.6498 0.0000 34 1 5.6693 4.4508 -0.8902 35 1 5.6686 4.4523 0.8898 36 1 7.0801 3.8313 0.0004 37 1 3.7669 -0.1554 1.9977 38 1 6.6504 -0.0693 0.9991 39 1 5.7877 1.2804 1.7766 40 1 5.5115 -0.0255 3.8323 41 1 7.2342 -0.0222 3.3793 42 1 10.4450 -4.4287 4.2417 43 1 4.1921 -2.3393 3.2128 44 1 5.2076 -3.5735 2.4266 45 1 3.7226 -2.3405 0.8074 46 1 5.4551 -2.1643 0.4378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274777739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:43 Heat of formation + Delta-G solvation = -112.323220 kcal Electronic energy + Delta-G solvation = -29924.829289 eV Core-core repulsion = 25781.212104 eV Total energy + Delta-G solvation = -4143.617186 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.89305 -39.13298 -38.78204 -37.37863 -36.44697 -35.03862 -32.50102 -31.34130 -30.38962 -29.77252 -29.69061 -27.99014 -26.82526 -26.31818 -24.03405 -22.65168 -22.31972 -21.96404 -20.48285 -18.93378 -18.82421 -17.46370 -17.04560 -16.66930 -16.58307 -16.16929 -15.69022 -15.62839 -15.07729 -14.96815 -14.53428 -14.28216 -14.24876 -13.90755 -13.75679 -13.21209 -13.11541 -12.80251 -12.58415 -12.42204 -12.33905 -11.83222 -11.76260 -11.64056 -11.51435 -11.24680 -11.16890 -11.00915 -10.92360 -10.86528 -10.85411 -10.58547 -10.21402 -10.10054 -9.96563 -9.26500 -8.82082 -8.35797 -8.30075 -7.52636 -7.16936 -6.15781 -4.60023 1.04189 1.18862 2.70761 3.16125 3.22795 3.25999 3.31809 3.50302 3.91256 4.12088 4.57235 4.60474 4.63968 4.74986 4.85492 4.87700 4.92728 4.96002 5.00652 5.07354 5.25518 5.27291 5.32066 5.35658 5.38149 5.56709 5.77106 5.78296 5.90094 5.95843 6.00188 6.10192 6.17611 6.18008 6.27105 6.34011 6.45702 6.57173 6.62872 6.69627 6.90099 7.06281 7.14770 7.49815 7.68348 7.86203 8.18846 8.40442 9.06207 9.48850 10.62099 10.80790 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015760 B = 0.003252 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.219702 B = 8607.353085 C =10073.606840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.299 6.299 3 C 0.145 3.855 4 C -0.237 4.237 5 C -0.050 4.050 6 C -0.236 4.236 7 C 0.148 3.852 8 O -0.293 6.293 9 C 0.024 3.976 10 C 0.039 3.961 11 O -0.309 6.309 12 C 0.103 3.897 13 C -0.150 4.150 14 C 0.125 3.875 15 N -0.643 5.643 16 C 0.560 3.440 17 O -0.578 6.578 18 C -0.544 4.544 19 H 0.073 0.927 20 C 0.088 3.912 21 N -0.768 5.768 22 Si 0.906 3.094 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.265 1.265 26 C 0.126 3.874 27 C -0.125 4.125 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.055 0.945 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.054 0.946 35 H 0.056 0.944 36 H 0.103 0.897 37 H 0.053 0.947 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.038 0.962 41 H 0.096 0.904 42 H 0.268 0.732 43 H 0.041 0.959 44 H 0.089 0.911 45 H 0.069 0.931 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.182 17.886 -8.411 25.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.212 6.212 3 C 0.098 3.902 4 C -0.256 4.256 5 C -0.069 4.069 6 C -0.255 4.255 7 C 0.101 3.899 8 O -0.206 6.206 9 C -0.071 4.071 10 C -0.007 4.007 11 O -0.226 6.226 12 C 0.048 3.952 13 C -0.189 4.189 14 C 0.000 4.000 15 N -0.381 5.381 16 C 0.366 3.634 17 O -0.461 6.461 18 C -0.580 4.580 19 H 0.091 0.909 20 C -0.132 4.132 21 N -0.397 5.397 22 Si 0.730 3.270 23 H -0.198 1.198 24 H -0.205 1.205 25 H -0.189 1.189 26 C 0.001 3.999 27 C -0.163 4.163 28 H 0.074 0.926 29 H 0.120 0.880 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.150 0.850 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.122 0.878 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.056 0.944 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.107 0.893 45 H 0.088 0.912 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.795 16.543 -8.513 24.405 hybrid contribution 0.316 1.198 0.332 1.283 sum -15.479 17.741 -8.181 24.925 Atomic orbital electron populations 1.23109 0.78395 1.04182 1.01220 1.86208 1.21144 1.25850 1.87971 1.19068 0.90809 0.85017 0.95284 1.21045 1.00064 0.91755 1.12747 1.20678 0.93662 0.97061 0.95460 1.21071 0.94711 0.97197 1.12536 1.19076 0.83325 0.92688 0.94772 1.86279 1.16332 1.30292 1.87662 1.23132 0.99671 0.83122 1.01145 1.17063 0.86481 0.85475 1.11659 1.86223 1.69419 1.36892 1.30052 1.22402 0.95669 0.93948 0.83176 1.22476 0.97467 0.99987 0.98942 1.21405 1.02314 0.82285 0.93966 1.48218 1.15435 1.04891 1.69560 1.18233 0.81908 0.86464 0.76753 1.90585 1.82846 1.14111 1.58561 1.20975 0.94273 0.93709 1.49089 0.90926 1.25728 0.99758 0.94522 0.93195 1.70016 1.28559 1.05936 1.35213 0.86403 0.81202 0.80070 0.79277 1.19762 1.20477 1.18879 1.21086 0.88095 0.99002 0.91687 1.22013 1.02134 0.92660 0.99519 0.92634 0.88005 0.92613 0.85048 0.85367 0.84970 0.92708 0.92559 0.87843 0.92851 0.90732 0.91302 0.94362 0.88553 0.92135 0.94108 0.89253 0.91247 0.90937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.30 -3.87 10.28 -34.31 -0.35 -4.23 16 3 C 0.14 1.91 6.70 -39.15 -0.26 1.64 16 4 C -0.24 -2.38 9.04 -39.43 -0.36 -2.74 16 5 C -0.05 -0.46 10.04 -39.59 -0.40 -0.85 16 6 C -0.24 -2.40 9.04 -39.43 -0.36 -2.76 16 7 C 0.15 1.97 6.53 -39.15 -0.26 1.71 16 8 O -0.29 -3.91 8.12 -34.32 -0.28 -4.19 16 9 C 0.02 0.21 9.81 101.05 0.99 1.20 16 10 C 0.04 0.59 5.58 -39.03 -0.22 0.37 16 11 O -0.31 -5.44 9.27 -45.28 -0.42 -5.86 16 12 C 0.10 1.80 2.63 -26.69 -0.07 1.73 16 13 C -0.15 -2.68 5.30 -26.61 -0.14 -2.82 16 14 C 0.12 2.48 6.35 -3.71 -0.02 2.45 16 15 N -0.64 -15.27 2.97 -174.43 -0.52 -15.79 16 16 C 0.56 16.36 7.61 -12.99 -0.10 16.26 16 17 O -0.58 -19.08 14.48 5.20 0.08 -19.01 16 18 C -0.54 -15.48 8.88 -35.63 -0.32 -15.79 16 19 H 0.07 1.88 5.64 -52.48 -0.30 1.59 16 20 C 0.09 2.47 5.50 -17.36 -0.10 2.37 16 21 N -0.77 -23.31 11.84 55.55 0.66 -22.65 16 22 Si 0.91 20.27 29.56 -169.99 -5.02 15.24 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.26 -5.69 7.11 56.52 0.40 -5.29 16 26 C 0.13 2.62 6.41 -3.71 -0.02 2.59 16 27 C -0.12 -2.28 5.73 -26.61 -0.15 -2.44 16 28 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 31 H 0.13 0.97 6.29 -52.49 -0.33 0.64 16 32 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.13 1.01 6.29 -52.49 -0.33 0.68 16 34 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 35 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 36 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.91 7.91 -51.93 -0.41 0.50 16 38 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 39 H 0.07 1.12 6.16 -51.92 -0.32 0.80 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.10 1.98 5.30 -51.93 -0.28 1.70 16 42 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 43 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.09 2.05 7.04 -51.93 -0.37 1.68 16 45 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 46 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 371.43 15.07 5.60 5.60 Total: -1.00 -37.02 371.43 -7.48 -44.51 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.44 Total: 2.24 kcal Atomic # 6 Polarization: 4.91 SS G_CDS: -0.78 Total: 4.13 kcal Atomic # 7 Polarization: -38.58 SS G_CDS: 0.14 Total: -38.44 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.98 Total: -33.28 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.02 -7.48 -44.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274777739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.816 kcal (2) G-P(sol) polarization free energy of solvation -37.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds