Wall clock time and date at job start Tue Mar 31 2020 18:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35997 * 116.99846 * 2 1 4 4 C 1.38666 * 120.04585 * 359.97438 * 3 2 1 5 5 C 1.38229 * 120.08882 * 180.02562 * 4 3 2 6 6 C 1.38229 * 120.18169 * 359.94982 * 5 4 3 7 7 C 1.38660 * 120.08828 * 0.04186 * 6 5 4 8 8 O 1.35998 * 120.04495 * 179.97438 * 7 6 5 9 9 C 1.42898 * 116.99900 * 359.97438 * 8 7 6 10 10 C 1.38982 * 120.04534 * 179.97438 * 3 2 1 11 11 O 1.36091 * 120.08839 * 0.26138 * 10 3 2 12 12 C 1.42902 * 116.99848 * 269.71619 * 11 10 3 13 13 C 1.53039 * 109.46212 * 270.02567 * 12 11 10 14 14 C 1.53192 * 109.31239 * 178.59726 * 13 12 11 15 15 N 1.46929 * 108.75939 * 54.66285 * 14 13 12 16 16 C 1.34778 * 120.63022 * 126.36250 * 15 14 13 17 17 O 1.21689 * 120.00023 * 174.77014 * 16 15 14 18 18 C 1.46366 * 119.99974 * 354.76312 * 16 15 14 19 19 H 1.08004 * 120.00354 * 5.60331 * 18 16 15 20 20 C 1.40058 * 120.00106 * 185.60173 * 18 16 15 21 21 N 1.30668 * 119.99735 * 0.02562 * 20 18 16 22 22 Si 1.86797 * 119.99931 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47033 * 90.00747 * 22 20 18 24 24 H 1.48499 * 109.46964 * 210.00071 * 22 20 18 25 25 H 1.48498 * 109.47544 * 330.00054 * 22 20 18 26 26 C 1.46925 * 118.73935 * 306.37620 * 15 14 13 27 27 C 1.53045 * 109.45652 * 149.97372 * 12 11 10 28 28 H 1.08999 * 109.47274 * 60.00198 * 1 2 3 29 29 H 1.09002 * 109.47140 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47293 * 299.99787 * 1 2 3 31 31 H 1.07993 * 119.95492 * 0.02562 * 4 3 2 32 32 H 1.08008 * 119.90732 * 179.97438 * 5 4 3 33 33 H 1.08001 * 119.95570 * 180.02562 * 6 5 4 34 34 H 1.08995 * 109.47091 * 299.99856 * 9 8 7 35 35 H 1.09000 * 109.47312 * 60.00299 * 9 8 7 36 36 H 1.09005 * 109.47155 * 180.02562 * 9 8 7 37 37 H 1.09002 * 109.45939 * 30.00267 * 12 11 10 38 38 H 1.08995 * 109.49871 * 298.56892 * 13 12 11 39 39 H 1.09008 * 109.49140 * 58.66453 * 13 12 11 40 40 H 1.08990 * 109.60349 * 294.87629 * 14 13 12 41 41 H 1.09005 * 109.70054 * 174.50554 * 14 13 12 42 42 H 0.96999 * 119.99732 * 179.97438 * 21 20 18 43 43 H 1.09002 * 109.58881 * 293.82866 * 26 15 14 44 44 H 1.08997 * 109.70217 * 173.46945 * 26 15 14 45 45 H 1.08993 * 109.49734 * 301.33524 * 27 12 11 46 46 H 1.08999 * 109.49902 * 61.40238 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 1.2920 2.3753 -0.0005 5 6 1.9186 3.6074 -0.0011 6 6 3.2987 3.6852 0.0000 7 6 4.0602 2.5265 0.0007 8 8 5.4180 2.6040 0.0012 9 6 5.9930 3.9122 0.0004 10 6 3.4342 1.2856 0.0005 11 8 4.1781 0.1460 -0.0043 12 6 4.5378 -0.3993 1.2667 13 6 5.8741 0.1954 1.7169 14 6 6.2391 -0.3648 3.0952 15 7 6.2242 -1.8325 3.0279 16 6 7.2956 -2.5489 3.4220 17 8 7.2376 -3.7640 3.4515 18 6 8.5290 -1.8653 3.8143 19 1 8.5531 -0.7873 3.8752 20 6 9.6780 -2.6092 4.1109 21 7 9.6491 -3.9135 4.0367 22 14 11.2518 -1.7369 4.6122 23 1 11.2786 -1.5735 6.0880 24 1 12.4229 -2.5424 4.1822 25 1 11.3053 -0.4013 3.9652 26 6 5.0193 -2.5043 2.5224 27 6 4.6676 -1.9198 1.1507 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 0.2135 2.3188 -0.0005 32 1 1.3281 4.5118 -0.0019 33 1 3.7844 4.6498 0.0000 34 1 5.6693 4.4508 -0.8902 35 1 5.6686 4.4523 0.8898 36 1 7.0801 3.8313 0.0004 37 1 3.7669 -0.1554 1.9977 38 1 6.6504 -0.0693 0.9991 39 1 5.7877 1.2804 1.7766 40 1 5.5115 -0.0255 3.8323 41 1 7.2342 -0.0222 3.3793 42 1 10.4450 -4.4287 4.2417 43 1 4.1921 -2.3393 3.2128 44 1 5.2076 -3.5735 2.4266 45 1 3.7226 -2.3405 0.8074 46 1 5.4551 -2.1643 0.4378 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000274777739.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:36:42 Heat of formation + Delta-G solvation = -137.273443 kcal Electronic energy + Delta-G solvation = -29925.911212 eV Core-core repulsion = 25781.212104 eV Total energy + Delta-G solvation = -4144.699108 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.80392 -40.39184 -39.94419 -38.92533 -37.37537 -36.79040 -34.67010 -32.94822 -31.99081 -30.75343 -30.55230 -28.65022 -28.45213 -27.48364 -25.63294 -24.19021 -23.39148 -22.80512 -22.17620 -20.64520 -19.79741 -18.61196 -18.48253 -17.88080 -17.75701 -17.38804 -17.06655 -16.43101 -16.34588 -16.04894 -15.84138 -15.74126 -15.55193 -15.41888 -15.31279 -14.54960 -14.41330 -14.19012 -13.64116 -13.50687 -13.42972 -13.39294 -13.16447 -12.94164 -12.73778 -12.61977 -12.58649 -12.39944 -12.36209 -12.18380 -11.99354 -11.98271 -11.90100 -11.62661 -11.45243 -10.92648 -10.67197 -9.78450 -9.30485 -9.13985 -9.07794 -8.28771 -6.83560 0.18628 0.37880 1.39820 1.41887 1.56944 1.95424 2.24210 2.37844 2.48160 2.75846 2.81189 2.91095 3.59890 3.78051 3.85839 3.92042 4.06739 4.09942 4.12508 4.15364 4.21330 4.34306 4.35278 4.41859 4.43709 4.44641 4.46570 4.55168 4.72496 4.75215 4.77981 4.81392 4.87929 4.93576 4.98411 5.12267 5.19726 5.21206 5.35315 5.39885 5.41909 5.49990 5.75660 6.13476 6.16861 6.37620 6.37924 6.78869 6.88064 7.40511 8.46168 8.67593 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015760 B = 0.003252 C = 0.002779 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.219702 B = 8607.353085 C =10073.606840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.330 6.330 3 C 0.133 3.867 4 C -0.235 4.235 5 C -0.038 4.038 6 C -0.235 4.235 7 C 0.136 3.864 8 O -0.325 6.325 9 C 0.016 3.984 10 C -0.011 4.011 11 O -0.327 6.327 12 C 0.112 3.888 13 C -0.134 4.134 14 C 0.124 3.876 15 N -0.646 5.646 16 C 0.541 3.459 17 O -0.632 6.632 18 C -0.568 4.568 19 H 0.094 0.906 20 C 0.027 3.973 21 N -0.823 5.823 22 Si 0.997 3.003 23 H -0.260 1.260 24 H -0.274 1.274 25 H -0.247 1.247 26 C 0.126 3.874 27 C -0.113 4.113 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.070 0.930 31 H 0.160 0.840 32 H 0.168 0.832 33 H 0.160 0.840 34 H 0.071 0.929 35 H 0.072 0.928 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.049 0.951 39 H 0.089 0.911 40 H 0.063 0.937 41 H 0.088 0.912 42 H 0.274 0.726 43 H 0.065 0.935 44 H 0.059 0.941 45 H 0.088 0.912 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.416 22.060 -8.306 29.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.087 3.913 4 C -0.254 4.254 5 C -0.056 4.056 6 C -0.254 4.254 7 C 0.089 3.911 8 O -0.238 6.238 9 C -0.078 4.078 10 C -0.056 4.056 11 O -0.244 6.244 12 C 0.057 3.943 13 C -0.173 4.173 14 C 0.001 3.999 15 N -0.382 5.382 16 C 0.347 3.653 17 O -0.520 6.520 18 C -0.605 4.605 19 H 0.112 0.888 20 C -0.188 4.188 21 N -0.453 5.453 22 Si 0.816 3.184 23 H -0.185 1.185 24 H -0.199 1.199 25 H -0.170 1.170 26 C 0.002 3.998 27 C -0.152 4.152 28 H 0.090 0.910 29 H 0.130 0.870 30 H 0.089 0.911 31 H 0.178 0.822 32 H 0.186 0.814 33 H 0.177 0.823 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.127 0.873 37 H 0.079 0.921 38 H 0.067 0.933 39 H 0.107 0.893 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.078 0.922 45 H 0.106 0.894 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.086 20.780 -8.432 28.193 hybrid contribution 0.524 -0.014 0.234 0.574 sum -16.562 20.766 -8.198 27.798 Atomic orbital electron populations 1.23400 0.76089 1.05506 1.02685 1.86158 1.23679 1.26470 1.88059 1.19278 0.90469 0.86104 0.95489 1.21411 1.01381 0.91035 1.11574 1.21200 0.93526 0.98129 0.92756 1.21424 0.95261 0.97218 1.11457 1.19280 0.83612 0.93057 0.95146 1.86218 1.16767 1.32997 1.87830 1.23399 0.99940 0.81745 1.02738 1.17566 0.87457 0.85224 1.15379 1.86186 1.70249 1.38512 1.29447 1.22157 0.95375 0.92693 0.84111 1.22296 0.97081 1.01031 0.96849 1.21566 1.02702 0.79807 0.95860 1.48112 1.15038 1.06563 1.68521 1.18684 0.83561 0.86196 0.76816 1.90531 1.84172 1.16333 1.60922 1.21502 0.94641 0.94990 1.49326 0.88778 1.27030 1.04184 0.95202 0.92337 1.70196 1.30264 1.08388 1.36459 0.85036 0.75023 0.79051 0.79314 1.18457 1.19883 1.16972 1.21158 0.87660 0.97328 0.93625 1.21840 1.02035 0.94149 0.97155 0.91032 0.86965 0.91117 0.82243 0.81430 0.82263 0.91020 0.90927 0.87289 0.92136 0.93261 0.89278 0.91909 0.89337 0.91621 0.91714 0.92235 0.89382 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.35 16 2 O -0.33 -8.25 10.28 -79.58 -0.82 -9.07 16 3 C 0.13 3.32 6.70 22.55 0.15 3.47 16 4 C -0.24 -3.95 9.04 22.37 0.20 -3.75 16 5 C -0.04 -0.53 10.04 22.27 0.22 -0.31 16 6 C -0.23 -4.00 9.04 22.37 0.20 -3.79 16 7 C 0.14 3.41 6.53 22.55 0.15 3.56 16 8 O -0.32 -8.36 8.12 -79.59 -0.65 -9.00 16 9 C 0.02 0.24 9.81 113.37 1.11 1.35 16 10 C -0.01 -0.34 5.58 22.63 0.13 -0.21 16 11 O -0.33 -11.72 9.27 -70.43 -0.65 -12.37 16 12 C 0.11 3.94 2.63 30.62 0.08 4.02 16 13 C -0.13 -4.82 5.30 30.67 0.16 -4.66 16 14 C 0.12 4.91 6.35 86.36 0.55 5.46 16 15 N -0.65 -31.71 2.97 -823.99 -2.45 -34.16 16 16 C 0.54 33.00 7.61 86.36 0.66 33.66 16 17 O -0.63 -44.20 14.48 -4.31 -0.06 -44.26 16 18 C -0.57 -33.08 8.88 24.83 0.22 -32.86 16 19 H 0.09 4.88 5.64 -2.91 -0.02 4.87 16 20 C 0.03 1.56 5.50 85.31 0.47 2.03 16 21 N -0.82 -51.80 11.84 21.84 0.26 -51.54 16 22 Si 1.00 41.70 29.56 68.60 2.03 43.73 16 23 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 24 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 25 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 26 C 0.13 5.46 6.41 86.36 0.55 6.01 16 27 C -0.11 -4.30 5.73 30.67 0.18 -4.13 16 28 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 29 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 31 H 0.16 1.67 6.29 -2.91 -0.02 1.65 16 32 H 0.17 0.99 8.06 -2.91 -0.02 0.97 16 33 H 0.16 1.73 6.29 -2.91 -0.02 1.72 16 34 H 0.07 0.80 7.66 -2.39 -0.02 0.78 16 35 H 0.07 0.82 7.66 -2.39 -0.02 0.81 16 36 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.06 2.03 7.91 -2.39 -0.02 2.01 16 38 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.09 2.85 6.16 -2.38 -0.01 2.83 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.09 3.63 5.30 -2.38 -0.01 3.62 16 42 H 0.27 15.59 8.29 -92.71 -0.77 14.82 16 43 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 44 H 0.06 2.92 7.04 -2.39 -0.02 2.90 16 45 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 46 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -86.47 371.43 4.81 -81.66 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 1.00 Total: 23.82 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 6.15 Total: 11.20 kcal Atomic # 7 Polarization: -83.51 SS G_CDS: -2.19 Total: -85.70 kcal Atomic # 8 Polarization: -72.53 SS G_CDS: -2.18 Total: -74.71 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -86.47 4.81 -81.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274777739.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.613 kcal (2) G-P(sol) polarization free energy of solvation -86.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds