Wall clock time and date at job start Tue Mar 31 2020 19:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42902 * 113.99970 * 2 1 4 4 H 1.09005 * 110.38413 * 27.77035 * 3 2 1 5 5 C 1.54385 * 110.34420 * 265.54229 * 3 2 1 6 6 N 1.48150 * 104.61705 * 264.99305 * 5 3 2 7 7 C 1.34779 * 127.83859 * 140.38448 * 6 5 3 8 8 O 1.21280 * 119.99891 * 0.02562 * 7 6 5 9 9 C 1.50705 * 119.99936 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.46742 * 180.02562 * 9 7 6 11 11 C 1.38326 * 119.96409 * 90.00156 * 10 9 7 12 12 C 1.38271 * 120.13532 * 179.97438 * 11 10 9 13 13 C 1.38128 * 120.07231 * 359.97438 * 12 11 10 14 14 C 1.38850 * 119.92697 * 0.02562 * 13 12 11 15 15 O 1.35753 * 120.06603 * 180.02562 * 14 13 12 16 16 C 1.34827 * 117.00382 * 354.46189 * 15 14 13 17 17 H 1.08000 * 119.99553 * 5.05893 * 16 15 14 18 18 C 1.38651 * 120.00369 * 185.05821 * 16 15 14 19 19 N 1.31557 * 119.99851 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 120.00190 * 179.97438 * 18 16 15 21 21 H 1.48496 * 109.46838 * 59.99767 * 20 18 16 22 22 H 1.48492 * 109.47179 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47157 * 300.00242 * 20 18 16 24 24 C 1.38075 * 119.96565 * 269.72135 * 10 9 7 25 25 C 1.48421 * 104.33727 * 320.38797 * 6 5 3 26 26 C 1.54285 * 110.34405 * 150.00105 * 3 2 1 27 27 H 1.09001 * 110.34148 * 237.85088 * 26 3 2 28 28 O 1.42900 * 110.34105 * 0.02562 * 26 3 2 29 29 C 1.42899 * 113.99954 * 208.52641 * 28 26 3 30 30 H 1.08997 * 109.47107 * 60.00040 * 1 2 3 31 31 H 1.09003 * 109.46545 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46882 * 299.99454 * 1 2 3 33 33 H 1.09006 * 110.40668 * 23.77308 * 5 3 2 34 34 H 1.08999 * 110.40904 * 146.20784 * 5 3 2 35 35 H 1.08998 * 109.46685 * 299.99903 * 9 7 6 36 36 H 1.09000 * 109.46917 * 60.00294 * 9 7 6 37 37 H 1.08002 * 119.93376 * 0.02562 * 11 10 9 38 38 H 1.08011 * 119.96588 * 179.97438 * 12 11 10 39 39 H 1.07998 * 120.03266 * 180.02562 * 13 12 11 40 40 H 0.97003 * 119.99503 * 179.97438 * 19 18 16 41 41 H 1.07999 * 120.03272 * 0.02562 * 24 10 9 42 42 H 1.08987 * 110.44752 * 280.87115 * 25 6 5 43 43 H 1.09005 * 110.49306 * 158.34917 * 25 6 5 44 44 H 1.09004 * 109.46807 * 300.00211 * 29 28 26 45 45 H 1.08998 * 109.47424 * 180.02562 * 29 28 26 46 46 H 1.09008 * 109.47195 * 59.99714 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3387 2.0201 0.4761 5 6 2.3313 1.7500 -1.4432 6 7 3.7544 1.3872 -1.6383 7 6 4.3322 0.8705 -2.7409 8 8 3.6645 0.6514 -3.7294 9 6 5.8079 0.5649 -2.7454 10 6 6.1999 0.0010 -4.0868 11 6 6.6076 0.8494 -5.1005 12 6 6.9686 0.3357 -6.3325 13 6 6.9236 -1.0268 -6.5544 14 6 6.5147 -1.8810 -5.5389 15 8 6.4699 -3.2206 -5.7538 16 6 6.7239 -3.6485 -7.0069 17 1 7.0299 -2.9441 -7.7663 18 6 6.5924 -4.9926 -7.3206 19 7 6.2192 -5.8505 -6.3957 20 14 6.9436 -5.5852 -9.0570 21 1 8.3504 -5.2698 -9.4126 22 1 6.7319 -7.0531 -9.1314 23 1 6.0283 -4.9037 -10.0073 24 6 6.1573 -1.3624 -4.3009 25 6 4.3997 1.7215 -0.3442 26 6 3.3729 1.2859 0.7233 27 1 3.3701 1.9895 1.5558 28 8 3.6695 -0.0323 1.1885 29 6 4.4974 -0.0652 2.3527 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.7018 1.2154 -2.1545 34 1 2.1957 2.8264 -1.5484 35 1 6.3690 1.4805 -2.5585 36 1 6.0305 -0.1634 -1.9656 37 1 6.6449 1.9150 -4.9290 38 1 7.2861 1.0007 -7.1222 39 1 7.2060 -1.4273 -7.5168 40 1 6.1269 -6.7908 -6.6153 41 1 5.8428 -2.0245 -3.5078 42 1 4.5861 2.7933 -0.2774 43 1 5.3296 1.1650 -0.2264 44 1 5.4486 0.4210 2.1359 45 1 4.6767 -1.1006 2.6420 46 1 3.9989 0.4592 3.1681 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276825237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:13 Heat of formation + Delta-G solvation = -133.704195 kcal Electronic energy + Delta-G solvation = -28868.116280 eV Core-core repulsion = 24723.571946 eV Total energy + Delta-G solvation = -4144.544334 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.40161 -40.72747 -39.68034 -38.17615 -38.08805 -36.69709 -34.35591 -33.57143 -31.63684 -30.85506 -29.60411 -28.45975 -27.50558 -27.24539 -27.12960 -24.63370 -23.27947 -22.63812 -21.76571 -20.55945 -19.44285 -18.74676 -18.46252 -18.24742 -17.07186 -17.01280 -16.74661 -16.51133 -16.33779 -16.23261 -16.07630 -15.73185 -15.58369 -15.46122 -14.96728 -14.89198 -14.45750 -14.18689 -14.02862 -13.88573 -13.59242 -13.50277 -13.13729 -12.94161 -12.84266 -12.64052 -12.55630 -12.47118 -12.36957 -12.23897 -12.17137 -12.12818 -11.84027 -11.22716 -11.02261 -10.80463 -10.72837 -10.60068 -9.66083 -9.60800 -8.99350 -8.47328 -6.16594 0.49228 0.74277 1.32634 1.44797 1.50144 1.61957 1.93871 2.17581 2.65206 2.82341 3.03230 3.13376 3.41194 3.43448 3.51866 3.78356 4.00149 4.04831 4.08356 4.19096 4.28781 4.36742 4.37850 4.49084 4.50618 4.52309 4.55568 4.56734 4.58720 4.64444 4.68948 4.71720 4.72617 4.83639 4.86440 4.97158 5.04263 5.11415 5.22014 5.28703 5.63479 5.71177 5.73392 6.01818 6.16141 6.21707 6.47169 6.51344 6.96501 7.16910 7.78406 8.76319 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.002593 C = 0.002445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.391030 B =10794.580841 C =11449.177964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.392 6.392 3 C 0.071 3.929 4 H 0.124 0.876 5 C 0.076 3.924 6 N -0.622 5.622 7 C 0.533 3.467 8 O -0.584 6.584 9 C -0.082 4.082 10 C -0.026 4.026 11 C -0.179 4.179 12 C -0.071 4.071 13 C -0.246 4.246 14 C 0.113 3.887 15 O -0.236 6.236 16 C -0.417 4.417 17 H 0.102 0.898 18 C -0.025 4.025 19 N -0.923 5.923 20 Si 1.022 2.978 21 H -0.253 1.253 22 H -0.270 1.270 23 H -0.259 1.259 24 C -0.195 4.195 25 C 0.072 3.928 26 C 0.071 3.929 27 H 0.129 0.871 28 O -0.392 6.392 29 C 0.021 3.979 30 H 0.043 0.957 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.112 0.888 35 H 0.145 0.855 36 H 0.110 0.890 37 H 0.150 0.850 38 H 0.149 0.851 39 H 0.120 0.880 40 H 0.273 0.727 41 H 0.098 0.902 42 H 0.125 0.875 43 H 0.095 0.905 44 H 0.058 0.942 45 H 0.078 0.922 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.130 23.041 19.428 30.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.310 6.310 3 C 0.012 3.988 4 H 0.142 0.858 5 C -0.047 4.047 6 N -0.356 5.356 7 C 0.324 3.676 8 O -0.463 6.463 9 C -0.121 4.121 10 C -0.027 4.027 11 C -0.197 4.197 12 C -0.089 4.089 13 C -0.265 4.265 14 C 0.063 3.937 15 O -0.143 6.143 16 C -0.493 4.493 17 H 0.119 0.881 18 C -0.222 4.222 19 N -0.562 5.562 20 Si 0.840 3.160 21 H -0.177 1.177 22 H -0.194 1.194 23 H -0.184 1.184 24 C -0.215 4.215 25 C -0.050 4.050 26 C 0.012 3.988 27 H 0.146 0.854 28 O -0.311 6.311 29 C -0.075 4.075 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.130 0.870 35 H 0.163 0.837 36 H 0.128 0.872 37 H 0.168 0.832 38 H 0.167 0.833 39 H 0.138 0.862 40 H 0.082 0.918 41 H 0.116 0.884 42 H 0.143 0.857 43 H 0.113 0.887 44 H 0.076 0.924 45 H 0.097 0.903 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.475 22.139 18.914 29.628 hybrid contribution -0.244 -0.816 -0.783 1.157 sum -5.719 21.323 18.130 28.567 Atomic orbital electron populations 1.22970 0.80160 1.03250 1.00929 1.88124 1.20693 1.27512 1.94717 1.23581 0.95033 0.86276 0.93885 0.85830 1.23066 0.82753 1.01457 0.97432 1.48930 1.10524 1.62761 1.13381 1.20572 0.90324 0.75523 0.81222 1.90740 1.66253 1.54048 1.35281 1.20619 0.91572 1.04712 0.95228 1.19177 0.96460 0.91041 0.96028 1.20965 1.05740 0.99953 0.93037 1.21157 0.96644 0.93309 0.97803 1.21311 1.10265 0.95083 0.99856 1.19839 0.94429 0.84345 0.95084 1.83939 1.80102 1.18092 1.32151 1.21821 1.47840 0.94160 0.85442 0.88122 1.26670 0.96068 0.94527 1.04976 1.70202 1.46184 1.03670 1.36102 0.84617 0.79768 0.77592 0.73990 1.17740 1.19420 1.18371 1.20186 1.09723 0.95943 0.95634 1.23443 0.97491 1.03194 0.80890 1.23566 0.92240 0.86293 0.96652 0.85376 1.88154 1.70193 1.26789 1.45935 1.23010 0.94291 1.03251 0.86944 0.93836 0.90165 0.91527 0.92719 0.86982 0.83689 0.87224 0.83247 0.83287 0.86179 0.91839 0.88371 0.85685 0.88712 0.92383 0.90332 0.92176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.85 113.37 1.23 1.62 16 2 O -0.39 -9.44 9.49 -128.57 -1.22 -10.66 16 3 C 0.07 1.10 3.55 31.50 0.11 1.21 16 4 H 0.12 0.89 7.82 -2.38 -0.02 0.87 16 5 C 0.08 1.49 6.79 86.53 0.59 2.08 16 6 N -0.62 -14.40 3.32 -807.23 -2.68 -17.08 16 7 C 0.53 17.29 7.91 87.66 0.69 17.98 16 8 O -0.58 -25.85 16.30 -3.03 -0.05 -25.90 16 9 C -0.08 -2.28 4.81 29.10 0.14 -2.14 16 10 C -0.03 -1.02 4.37 -19.88 -0.09 -1.10 16 11 C -0.18 -6.24 9.70 22.30 0.22 -6.02 16 12 C -0.07 -2.71 10.04 22.25 0.22 -2.49 16 13 C -0.25 -11.84 9.17 22.39 0.21 -11.63 16 14 C 0.11 6.29 6.65 22.57 0.15 6.44 16 15 O -0.24 -15.50 9.76 -22.74 -0.22 -15.72 16 16 C -0.42 -26.05 9.49 67.92 0.64 -25.41 16 17 H 0.10 5.77 5.20 -2.91 -0.02 5.75 16 18 C -0.03 -1.54 5.49 84.83 0.47 -1.07 16 19 N -0.92 -60.01 13.67 21.61 0.30 -59.72 16 20 Si 1.02 45.36 29.55 68.60 2.03 47.38 16 21 H -0.25 -10.41 7.11 99.48 0.71 -9.71 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 23 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 24 C -0.20 -9.62 9.64 22.39 0.22 -9.41 16 25 C 0.07 0.89 6.68 86.48 0.58 1.46 16 26 C 0.07 0.90 3.53 31.50 0.11 1.01 16 27 H 0.13 0.49 7.83 -2.39 -0.02 0.48 16 28 O -0.39 -7.88 9.49 -128.57 -1.22 -9.10 16 29 C 0.02 0.25 10.86 113.37 1.23 1.48 16 30 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.07 0.73 8.11 -2.39 -0.02 0.71 16 33 H 0.05 1.50 7.82 -2.38 -0.02 1.49 16 34 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.15 2.57 8.08 -2.39 -0.02 2.55 16 36 H 0.11 2.83 7.90 -2.39 -0.02 2.81 16 37 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 38 H 0.15 4.39 8.06 -2.90 -0.02 4.37 16 39 H 0.12 5.77 5.64 -2.91 -0.02 5.76 16 40 H 0.27 16.19 8.31 -92.71 -0.77 15.42 16 41 H 0.10 4.97 8.06 -2.91 -0.02 4.94 16 42 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.09 1.14 7.26 -2.38 -0.02 1.13 16 44 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.06 0.45 8.10 -2.38 -0.02 0.44 16 Total: -1.00 -96.01 387.51 4.63 -91.38 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.98 Total: 25.39 kcal Atomic # 6 Polarization: -32.69 SS G_CDS: 6.72 Total: -25.98 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -2.39 Total: -76.80 kcal Atomic # 8 Polarization: -58.67 SS G_CDS: -2.71 Total: -61.38 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -96.01 4.63 -91.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276825237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.324 kcal (2) G-P(sol) polarization free energy of solvation -96.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds