Wall clock time and date at job start Tue Mar 31 2020 19:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99855 * 2 1 4 4 H 1.08995 * 110.77963 * 31.79121 * 3 2 1 5 5 C 1.54322 * 110.71928 * 268.54721 * 3 2 1 6 6 N 1.47022 * 107.26880 * 263.83260 * 5 3 2 7 7 C 1.34776 * 125.64615 * 181.02051 * 6 5 3 8 8 O 1.21282 * 120.00225 * 359.73149 * 7 6 5 9 9 C 1.50707 * 120.00303 * 179.97438 * 7 6 5 10 10 C 1.50700 * 109.47487 * 179.72845 * 9 7 6 11 11 C 1.38303 * 119.92687 * 269.72991 * 10 9 7 12 12 C 1.38102 * 120.06272 * 179.72720 * 11 10 9 13 13 C 1.38876 * 119.93114 * 0.51943 * 12 11 10 14 14 O 1.35757 * 120.06872 * 179.72765 * 13 12 11 15 15 C 1.34829 * 117.00152 * 174.48954 * 14 13 12 16 16 H 1.08006 * 119.99844 * 5.06097 * 15 14 13 17 17 C 1.38646 * 120.00139 * 185.05442 * 15 14 13 18 18 N 1.31554 * 119.99976 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00024 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47146 * 60.00555 * 19 17 15 21 21 H 1.48506 * 109.47270 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47555 * 300.00208 * 19 17 15 23 23 C 1.38877 * 119.86516 * 359.75440 * 13 12 11 24 24 C 1.38103 * 119.92732 * 359.97438 * 23 13 12 25 25 C 1.47426 * 108.70661 * 1.28934 * 6 5 3 26 26 C 1.55128 * 104.71863 * 335.55276 * 25 6 5 27 27 H 1.09001 * 111.19289 * 279.19183 * 26 25 6 28 28 O 1.42901 * 110.93676 * 155.29238 * 26 25 6 29 29 C 1.42898 * 114.00262 * 97.95649 * 28 26 25 30 30 H 1.08994 * 109.47399 * 60.00008 * 1 2 3 31 31 H 1.09001 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46973 * 299.99655 * 1 2 3 33 33 H 1.09003 * 109.88285 * 144.41549 * 5 3 2 34 34 H 1.09000 * 110.01399 * 23.31715 * 5 3 2 35 35 H 1.08993 * 109.47042 * 299.73174 * 9 7 6 36 36 H 1.08999 * 109.46473 * 59.72779 * 9 7 6 37 37 H 1.07997 * 119.96502 * 359.97438 * 11 10 9 38 38 H 1.08000 * 120.03542 * 180.27868 * 12 11 10 39 39 H 0.97001 * 119.99983 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03837 * 179.97438 * 23 13 12 41 41 H 1.07997 * 119.96249 * 180.02562 * 24 23 13 42 42 H 1.08998 * 110.36832 * 94.48434 * 25 6 5 43 43 H 1.08998 * 110.36397 * 216.80524 * 25 6 5 44 44 H 1.09001 * 109.46960 * 59.99700 * 29 28 26 45 45 H 1.09000 * 109.47657 * 179.97438 * 29 28 26 46 46 H 1.08996 * 109.46981 * 300.00036 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3762 2.0110 0.5369 5 6 2.2657 1.7894 -1.4430 6 7 3.6689 1.4881 -1.7623 7 6 4.2887 1.7740 -2.9244 8 8 3.6793 2.3229 -3.8178 9 6 5.7378 1.4068 -3.1158 10 6 6.1848 1.8263 -4.4925 11 6 6.0667 0.9475 -5.5539 12 6 6.4702 1.3310 -6.8177 13 6 7.0050 2.5966 -7.0201 14 8 7.4077 2.9745 -8.2603 15 6 7.8105 4.2525 -8.4102 16 1 7.8807 4.9010 -7.5494 17 6 8.1346 4.7340 -9.6693 18 7 8.0486 3.9442 -10.7178 19 14 8.6918 6.5048 -9.8770 20 1 9.9225 6.7335 -9.0779 21 1 8.9757 6.7695 -11.3105 22 1 7.6201 7.4194 -9.4081 23 6 7.1276 3.4746 -5.9512 24 6 6.7170 3.0872 -4.6908 25 6 4.2837 0.8157 -0.6033 26 6 3.4353 1.2718 0.6127 27 1 3.7370 2.2618 0.9546 28 8 3.5135 0.3199 1.6757 29 6 4.4612 0.6582 2.6903 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.0926 2.8635 -1.5099 34 1 1.6072 1.2641 -2.1347 35 1 6.3436 1.9158 -2.3662 36 1 5.8566 0.3287 -3.0080 37 1 5.6548 -0.0381 -5.3949 38 1 6.3736 0.6461 -7.6471 39 1 8.2750 4.2812 -11.5988 40 1 7.5434 4.4593 -6.1053 41 1 6.8116 3.7697 -3.8592 42 1 4.2314 -0.2666 -0.7209 43 1 5.3189 1.1356 -0.4844 44 1 4.1908 1.6158 3.1353 45 1 4.4600 -0.1131 3.4605 46 1 5.4554 0.7304 2.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000276827003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:18 Heat of formation + Delta-G solvation = -109.425989 kcal Electronic energy + Delta-G solvation = -28309.709680 eV Core-core repulsion = 24166.218128 eV Total energy + Delta-G solvation = -4143.491552 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.55270 -39.21496 -38.51627 -37.58477 -36.52586 -35.84160 -32.46067 -31.67269 -30.53621 -30.09072 -28.99757 -27.08312 -26.87425 -26.37187 -25.08607 -23.45856 -21.91683 -21.54702 -20.69937 -19.31873 -17.92774 -17.89092 -17.40428 -16.90650 -16.23110 -16.06936 -15.71601 -15.59149 -15.41518 -14.89528 -14.57166 -14.52520 -14.36095 -14.10508 -13.63497 -13.52081 -13.26243 -13.13625 -13.09673 -12.71937 -12.64386 -12.40389 -12.18034 -12.04210 -11.79644 -11.57706 -11.49420 -11.40812 -11.21175 -10.80588 -10.70298 -10.59206 -10.39778 -10.20820 -10.00325 -9.64939 -9.27733 -8.78884 -8.77057 -8.09269 -7.11044 -6.39781 -3.98362 2.27488 2.30994 2.74335 2.76328 3.15928 3.17834 3.20218 3.25041 3.36318 3.96786 4.01132 4.08382 4.51954 4.56556 4.64201 4.79994 4.88964 4.92215 4.94596 5.03924 5.04519 5.13438 5.15291 5.23339 5.27165 5.29088 5.34019 5.36273 5.41690 5.47555 5.52393 5.70482 5.77514 5.90752 6.08519 6.27373 6.47515 6.60148 6.75915 6.83425 6.97106 7.10613 7.29397 7.39280 7.42398 7.50410 7.89580 8.05426 8.26911 9.05769 9.76754 10.78333 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023898 B = 0.002028 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.378137 B =13803.374452 C =14029.733829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.359 6.359 3 C 0.079 3.921 4 H 0.087 0.913 5 C 0.086 3.914 6 N -0.623 5.623 7 C 0.527 3.473 8 O -0.516 6.516 9 C -0.074 4.074 10 C -0.171 4.171 11 C -0.059 4.059 12 C -0.191 4.191 13 C 0.157 3.843 14 O -0.178 6.178 15 C -0.391 4.391 16 H 0.091 0.909 17 C 0.038 3.962 18 N -0.864 5.864 19 Si 0.941 3.059 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.270 1.270 23 C -0.232 4.232 24 C -0.056 4.056 25 C 0.085 3.915 26 C 0.079 3.921 27 H 0.092 0.908 28 O -0.357 6.357 29 C 0.024 3.976 30 H 0.042 0.958 31 H 0.088 0.912 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.270 0.730 40 H 0.126 0.874 41 H 0.103 0.897 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.042 0.958 45 H 0.089 0.911 46 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.845 -5.793 27.637 29.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C 0.020 3.980 4 H 0.104 0.896 5 C -0.037 4.037 6 N -0.362 5.362 7 C 0.317 3.683 8 O -0.389 6.389 9 C -0.113 4.113 10 C -0.172 4.172 11 C -0.077 4.077 12 C -0.210 4.210 13 C 0.103 3.897 14 O -0.082 6.082 15 C -0.467 4.467 16 H 0.108 0.892 17 C -0.166 4.166 18 N -0.499 5.499 19 Si 0.766 3.234 20 H -0.195 1.195 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.252 4.252 24 C -0.074 4.074 25 C -0.039 4.039 26 C 0.019 3.981 27 H 0.110 0.890 28 O -0.274 6.274 29 C -0.072 4.072 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.109 0.891 36 H 0.111 0.889 37 H 0.126 0.874 38 H 0.135 0.865 39 H 0.080 0.920 40 H 0.144 0.856 41 H 0.121 0.879 42 H 0.102 0.898 43 H 0.099 0.901 44 H 0.061 0.939 45 H 0.107 0.893 46 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -10.074 -5.909 26.573 29.026 hybrid contribution 0.173 1.389 0.031 1.400 sum -9.901 -4.521 26.604 28.744 Atomic orbital electron populations 1.22849 0.80896 1.03115 0.99971 1.88030 1.19585 1.25466 1.94613 1.23270 0.94175 0.86437 0.94160 0.89552 1.22457 0.84465 1.01090 0.95706 1.48387 1.11558 1.61121 1.15096 1.20822 0.89599 0.78212 0.79704 1.90759 1.67061 1.41012 1.40099 1.20388 0.91199 1.02528 0.97225 1.18637 1.09278 0.96148 0.93173 1.20408 0.97584 0.97966 0.91760 1.20154 1.07657 0.95974 0.97232 1.19381 0.91273 0.93017 0.86029 1.83978 1.70664 1.29806 1.23710 1.21274 1.45352 0.85230 0.94861 0.89161 1.25281 0.97091 1.00004 0.94193 1.70032 1.44944 1.35818 0.99075 0.85787 0.79222 0.80606 0.77830 1.19536 1.20307 1.19532 1.21095 1.09764 1.01577 0.92733 1.20492 0.96529 0.94368 0.96059 1.22728 0.97356 0.98929 0.84844 1.23471 0.94070 0.93026 0.87512 0.89016 1.88062 1.60409 1.46287 1.32685 1.22912 0.92138 1.01074 0.91089 0.93900 0.89340 0.93915 0.90480 0.90429 0.89117 0.88930 0.87362 0.86519 0.92027 0.85592 0.87879 0.89789 0.90118 0.93912 0.89250 0.93640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.88 101.05 1.10 1.29 16 2 O -0.36 -3.47 9.97 -52.52 -0.52 -3.99 16 3 C 0.08 0.64 3.28 -24.90 -0.08 0.55 16 4 H 0.09 0.51 7.89 -51.93 -0.41 0.10 16 5 C 0.09 0.88 6.63 -3.06 -0.02 0.86 16 6 N -0.62 -7.23 3.32 -170.38 -0.57 -7.80 16 7 C 0.53 7.94 7.84 -10.98 -0.09 7.85 16 8 O -0.52 -10.26 16.36 5.56 0.09 -10.17 16 9 C -0.07 -0.99 4.82 -29.03 -0.14 -1.13 16 10 C -0.17 -3.10 4.38 -104.58 -0.46 -3.55 16 11 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 12 C -0.19 -4.29 9.99 -39.40 -0.39 -4.68 16 13 C 0.16 3.98 6.65 -39.11 -0.26 3.72 16 14 O -0.18 -5.27 9.76 0.03 0.00 -5.27 16 15 C -0.39 -11.25 9.49 30.88 0.29 -10.96 16 16 H 0.09 2.41 5.20 -52.48 -0.27 2.13 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 18 N -0.86 -25.90 13.67 55.48 0.76 -25.14 16 19 Si 0.94 21.02 29.55 -169.99 -5.02 15.99 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.40 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 C -0.23 -5.32 9.17 -39.39 -0.36 -5.68 16 24 C -0.06 -1.09 9.69 -39.61 -0.38 -1.48 16 25 C 0.09 0.73 6.43 -2.41 -0.02 0.72 16 26 C 0.08 0.59 3.43 -24.46 -0.08 0.51 16 27 H 0.09 0.52 7.83 -51.93 -0.41 0.11 16 28 O -0.36 -2.95 10.05 -52.52 -0.53 -3.47 16 29 C 0.02 0.12 10.85 101.05 1.10 1.22 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.04 0.22 8.11 -51.93 -0.42 -0.20 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.89 8.07 -51.93 -0.42 0.47 16 35 H 0.09 0.98 7.81 -51.93 -0.41 0.58 16 36 H 0.09 1.04 8.08 -51.93 -0.42 0.62 16 37 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 38 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.13 2.86 5.64 -52.49 -0.30 2.56 16 41 H 0.10 1.71 8.06 -52.49 -0.42 1.28 16 42 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.55 7.48 -51.93 -0.39 0.16 16 44 H 0.04 0.17 8.12 -51.93 -0.42 -0.26 16 45 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 46 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 LS Contribution 388.29 15.07 5.85 5.85 Total: -1.00 -36.39 388.29 -7.02 -43.41 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -6.80 Total: 1.89 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -0.28 Total: -11.30 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.19 Total: -32.94 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.96 Total: -22.90 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.39 -7.02 -43.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276827003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.016 kcal (2) G-P(sol) polarization free energy of solvation -36.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds