Wall clock time and date at job start Tue Mar 31 2020 19:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99855 * 2 1 4 4 H 1.08995 * 110.77963 * 31.79121 * 3 2 1 5 5 C 1.54322 * 110.71928 * 268.54721 * 3 2 1 6 6 N 1.47022 * 107.26880 * 263.83260 * 5 3 2 7 7 C 1.34776 * 125.64615 * 181.02051 * 6 5 3 8 8 O 1.21282 * 120.00225 * 359.73149 * 7 6 5 9 9 C 1.50707 * 120.00303 * 179.97438 * 7 6 5 10 10 C 1.50700 * 109.47487 * 179.72845 * 9 7 6 11 11 C 1.38303 * 119.92687 * 269.72991 * 10 9 7 12 12 C 1.38102 * 120.06272 * 179.72720 * 11 10 9 13 13 C 1.38876 * 119.93114 * 0.51943 * 12 11 10 14 14 O 1.35757 * 120.06872 * 179.72765 * 13 12 11 15 15 C 1.34829 * 117.00152 * 174.48954 * 14 13 12 16 16 H 1.08006 * 119.99844 * 5.06097 * 15 14 13 17 17 C 1.38646 * 120.00139 * 185.05442 * 15 14 13 18 18 N 1.31554 * 119.99976 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00024 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47146 * 60.00555 * 19 17 15 21 21 H 1.48506 * 109.47270 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47555 * 300.00208 * 19 17 15 23 23 C 1.38877 * 119.86516 * 359.75440 * 13 12 11 24 24 C 1.38103 * 119.92732 * 359.97438 * 23 13 12 25 25 C 1.47426 * 108.70661 * 1.28934 * 6 5 3 26 26 C 1.55128 * 104.71863 * 335.55276 * 25 6 5 27 27 H 1.09001 * 111.19289 * 279.19183 * 26 25 6 28 28 O 1.42901 * 110.93676 * 155.29238 * 26 25 6 29 29 C 1.42898 * 114.00262 * 97.95649 * 28 26 25 30 30 H 1.08994 * 109.47399 * 60.00008 * 1 2 3 31 31 H 1.09001 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46973 * 299.99655 * 1 2 3 33 33 H 1.09003 * 109.88285 * 144.41549 * 5 3 2 34 34 H 1.09000 * 110.01399 * 23.31715 * 5 3 2 35 35 H 1.08993 * 109.47042 * 299.73174 * 9 7 6 36 36 H 1.08999 * 109.46473 * 59.72779 * 9 7 6 37 37 H 1.07997 * 119.96502 * 359.97438 * 11 10 9 38 38 H 1.08000 * 120.03542 * 180.27868 * 12 11 10 39 39 H 0.97001 * 119.99983 * 179.97438 * 18 17 15 40 40 H 1.07996 * 120.03837 * 179.97438 * 23 13 12 41 41 H 1.07997 * 119.96249 * 180.02562 * 24 23 13 42 42 H 1.08998 * 110.36832 * 94.48434 * 25 6 5 43 43 H 1.08998 * 110.36397 * 216.80524 * 25 6 5 44 44 H 1.09001 * 109.46960 * 59.99700 * 29 28 26 45 45 H 1.09000 * 109.47657 * 179.97438 * 29 28 26 46 46 H 1.08996 * 109.46981 * 300.00036 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3762 2.0110 0.5369 5 6 2.2657 1.7894 -1.4430 6 7 3.6689 1.4881 -1.7623 7 6 4.2887 1.7740 -2.9244 8 8 3.6793 2.3229 -3.8178 9 6 5.7378 1.4068 -3.1158 10 6 6.1848 1.8263 -4.4925 11 6 6.0667 0.9475 -5.5539 12 6 6.4702 1.3310 -6.8177 13 6 7.0050 2.5966 -7.0201 14 8 7.4077 2.9745 -8.2603 15 6 7.8105 4.2525 -8.4102 16 1 7.8807 4.9010 -7.5494 17 6 8.1346 4.7340 -9.6693 18 7 8.0486 3.9442 -10.7178 19 14 8.6918 6.5048 -9.8770 20 1 9.9225 6.7335 -9.0779 21 1 8.9757 6.7695 -11.3105 22 1 7.6201 7.4194 -9.4081 23 6 7.1276 3.4746 -5.9512 24 6 6.7170 3.0872 -4.6908 25 6 4.2837 0.8157 -0.6033 26 6 3.4353 1.2718 0.6127 27 1 3.7370 2.2618 0.9546 28 8 3.5135 0.3199 1.6757 29 6 4.4612 0.6582 2.6903 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 2.0926 2.8635 -1.5099 34 1 1.6072 1.2641 -2.1347 35 1 6.3436 1.9158 -2.3662 36 1 5.8566 0.3287 -3.0080 37 1 5.6548 -0.0381 -5.3949 38 1 6.3736 0.6461 -7.6471 39 1 8.2750 4.2812 -11.5988 40 1 7.5434 4.4593 -6.1053 41 1 6.8116 3.7697 -3.8592 42 1 4.2314 -0.2666 -0.7209 43 1 5.3189 1.1356 -0.4844 44 1 4.1908 1.6158 3.1353 45 1 4.4600 -0.1131 3.4605 46 1 5.4554 0.7304 2.2493 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000276827003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:32:17 Heat of formation + Delta-G solvation = -134.977447 kcal Electronic energy + Delta-G solvation = -28310.817675 eV Core-core repulsion = 24166.218128 eV Total energy + Delta-G solvation = -4144.599546 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.45990 -40.73140 -39.72424 -38.21073 -38.11525 -36.77084 -34.40385 -33.08121 -31.79835 -31.46824 -29.74751 -28.21832 -27.44693 -27.29477 -26.84370 -24.32613 -23.64374 -22.48429 -21.94615 -20.37296 -19.83616 -18.83208 -18.49704 -18.33652 -16.94893 -16.78045 -16.70932 -16.55639 -16.33457 -16.10857 -15.94400 -15.83402 -15.55168 -15.42543 -15.07412 -14.87249 -14.46762 -14.36021 -14.10487 -13.96027 -13.67670 -13.57447 -13.43140 -12.94867 -12.82202 -12.69989 -12.52120 -12.46473 -12.32527 -12.25122 -12.14357 -12.07063 -11.94220 -11.18511 -11.03983 -10.77392 -10.75810 -10.42426 -9.77381 -9.73113 -8.91269 -8.47031 -6.15436 0.60756 0.65251 1.33744 1.45020 1.50702 1.63159 1.85969 2.17919 2.67657 2.77048 2.86632 3.15474 3.35271 3.46399 3.51944 3.82059 4.00919 4.03232 4.05037 4.08591 4.19076 4.27544 4.41310 4.45178 4.50925 4.56060 4.57533 4.60442 4.63880 4.66300 4.67149 4.76528 4.80538 4.85561 4.89350 4.98507 5.07124 5.13891 5.21586 5.29860 5.55748 5.70895 5.76643 6.02600 6.10232 6.20827 6.32817 6.43564 6.97122 7.17120 7.78349 8.76199 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.023898 B = 0.002028 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.378137 B =13803.374452 C =14029.733829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.383 6.383 3 C 0.080 3.920 4 H 0.110 0.890 5 C 0.082 3.918 6 N -0.616 5.616 7 C 0.526 3.474 8 O -0.578 6.578 9 C -0.071 4.071 10 C -0.147 4.147 11 C -0.059 4.059 12 C -0.206 4.206 13 C 0.113 3.887 14 O -0.233 6.233 15 C -0.415 4.415 16 H 0.101 0.899 17 C -0.025 4.025 18 N -0.922 5.922 19 Si 1.021 2.979 20 H -0.254 1.254 21 H -0.271 1.271 22 H -0.260 1.260 23 C -0.243 4.243 24 C -0.058 4.058 25 C 0.080 3.920 26 C 0.083 3.917 27 H 0.116 0.884 28 O -0.378 6.378 29 C 0.018 3.982 30 H 0.043 0.957 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.131 0.869 36 H 0.124 0.876 37 H 0.143 0.857 38 H 0.112 0.888 39 H 0.273 0.727 40 H 0.120 0.880 41 H 0.141 0.859 42 H 0.077 0.923 43 H 0.108 0.892 44 H 0.055 0.945 45 H 0.094 0.906 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 -5.376 32.138 34.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.302 6.302 3 C 0.022 3.978 4 H 0.128 0.872 5 C -0.042 4.042 6 N -0.352 5.352 7 C 0.317 3.683 8 O -0.456 6.456 9 C -0.110 4.110 10 C -0.148 4.148 11 C -0.077 4.077 12 C -0.226 4.226 13 C 0.062 3.938 14 O -0.140 6.140 15 C -0.491 4.491 16 H 0.118 0.882 17 C -0.222 4.222 18 N -0.560 5.560 19 Si 0.839 3.161 20 H -0.178 1.178 21 H -0.195 1.195 22 H -0.184 1.184 23 C -0.262 4.262 24 C -0.075 4.075 25 C -0.042 4.042 26 C 0.024 3.976 27 H 0.134 0.866 28 O -0.296 6.296 29 C -0.078 4.078 30 H 0.061 0.939 31 H 0.112 0.888 32 H 0.076 0.924 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.149 0.851 36 H 0.142 0.858 37 H 0.161 0.839 38 H 0.130 0.870 39 H 0.082 0.918 40 H 0.137 0.863 41 H 0.159 0.841 42 H 0.096 0.904 43 H 0.126 0.874 44 H 0.073 0.927 45 H 0.113 0.887 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.128 -5.543 31.190 33.258 hybrid contribution 0.008 1.018 -0.993 1.422 sum -10.120 -4.525 30.197 32.167 Atomic orbital electron populations 1.22985 0.79722 1.03797 1.00745 1.87992 1.21052 1.26515 1.94631 1.23364 0.95317 0.86409 0.92755 0.87196 1.22577 0.83474 1.01169 0.96945 1.48340 1.12183 1.59765 1.14905 1.20942 0.89964 0.77570 0.79851 1.90756 1.68418 1.44161 1.42314 1.20500 0.90689 1.04990 0.94843 1.19224 1.05368 0.94863 0.95363 1.20855 0.96389 0.99820 0.90605 1.20421 1.08031 0.95188 0.98913 1.19930 0.93251 0.94782 0.85796 1.83940 1.73522 1.30463 1.26054 1.21793 1.45833 0.85675 0.95796 0.88184 1.26637 0.96929 1.05270 0.93407 1.70186 1.47547 1.38493 0.99751 0.84630 0.79304 0.73901 0.78239 1.17823 1.19499 1.18425 1.21234 1.10165 1.01068 0.93726 1.20924 0.95395 0.95648 0.95581 1.22963 0.98897 0.98378 0.84012 1.23503 0.93060 0.93989 0.87085 0.86639 1.88041 1.61371 1.46919 1.33262 1.23095 0.92047 1.01979 0.90651 0.93858 0.88842 0.92353 0.90184 0.92336 0.85116 0.85767 0.83939 0.87026 0.91834 0.86253 0.84143 0.90445 0.87381 0.92658 0.88717 0.92578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 10.88 113.37 1.23 1.51 16 2 O -0.38 -6.65 9.97 -132.45 -1.32 -7.97 16 3 C 0.08 1.08 3.28 31.78 0.10 1.18 16 4 H 0.11 0.94 7.89 -2.39 -0.02 0.92 16 5 C 0.08 1.51 6.63 86.73 0.57 2.09 16 6 N -0.62 -12.37 3.32 -811.35 -2.70 -15.07 16 7 C 0.53 14.24 7.84 87.66 0.69 14.93 16 8 O -0.58 -22.27 16.36 -3.03 -0.05 -22.32 16 9 C -0.07 -1.56 4.82 29.10 0.14 -1.42 16 10 C -0.15 -4.89 4.38 -19.84 -0.09 -4.98 16 11 C -0.06 -2.17 9.69 22.25 0.22 -1.95 16 12 C -0.21 -9.56 9.99 22.39 0.22 -9.33 16 13 C 0.11 6.00 6.65 22.58 0.15 6.15 16 14 O -0.23 -14.75 9.76 -22.80 -0.22 -14.97 16 15 C -0.41 -25.20 9.49 67.92 0.64 -24.55 16 16 H 0.10 5.58 5.20 -2.91 -0.02 5.56 16 17 C -0.03 -1.49 5.49 84.83 0.47 -1.02 16 18 N -0.92 -58.37 13.67 21.61 0.30 -58.07 16 19 Si 1.02 44.23 29.55 68.60 2.03 46.26 16 20 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 21 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 23 C -0.24 -11.28 9.17 22.39 0.21 -11.07 16 24 C -0.06 -2.12 9.69 22.25 0.22 -1.90 16 25 C 0.08 1.05 6.43 86.93 0.56 1.60 16 26 C 0.08 0.92 3.43 32.06 0.11 1.03 16 27 H 0.12 0.74 7.83 -2.39 -0.02 0.72 16 28 O -0.38 -4.95 10.05 -132.45 -1.33 -6.28 16 29 C 0.02 0.11 10.85 113.37 1.23 1.34 16 30 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.48 8.11 -2.39 -0.02 0.46 16 33 H 0.08 1.43 8.14 -2.39 -0.02 1.42 16 34 H 0.06 1.31 8.07 -2.39 -0.02 1.29 16 35 H 0.13 1.94 7.81 -2.39 -0.02 1.92 16 36 H 0.12 2.06 8.08 -2.39 -0.02 2.05 16 37 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 38 H 0.11 5.11 8.06 -2.91 -0.02 5.09 16 39 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 40 H 0.12 5.57 5.64 -2.91 -0.02 5.56 16 41 H 0.14 4.09 8.06 -2.91 -0.02 4.07 16 42 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.11 0.84 7.48 -2.39 -0.02 0.82 16 44 H 0.05 0.21 8.12 -2.39 -0.02 0.19 16 45 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 46 H 0.06 0.23 8.14 -2.39 -0.02 0.22 16 Total: -1.00 -86.63 388.29 4.35 -82.28 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 0.98 Total: 22.55 kcal Atomic # 6 Polarization: -33.07 SS G_CDS: 6.67 Total: -26.40 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -2.40 Total: -73.14 kcal Atomic # 8 Polarization: -48.61 SS G_CDS: -2.92 Total: -51.54 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -86.63 4.35 -82.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000276827003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.702 kcal (2) G-P(sol) polarization free energy of solvation -86.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds