Wall clock time and date at job start Tue Mar 31 2020 18:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35963 * 116.99796 * 2 1 4 4 C 1.38078 * 120.00050 * 359.97114 * 3 2 1 5 5 C 1.39978 * 119.83607 * 180.02562 * 4 3 2 6 6 C 1.46963 * 120.07386 * 180.02562 * 5 4 3 7 7 C 1.35035 * 119.99832 * 179.97438 * 6 5 4 8 8 C 1.46253 * 119.99776 * 180.02562 * 7 6 5 9 9 O 1.21722 * 120.00371 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99535 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99808 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46944 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.47003 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47478 * 179.97438 * 13 12 11 15 15 O 1.42893 * 109.47564 * 179.97438 * 14 13 12 16 16 C 1.40025 * 119.84332 * 0.02562 * 5 4 3 17 17 C 1.37645 * 120.00280 * 0.02562 * 16 5 4 18 18 C 1.39056 * 120.15966 * 359.97438 * 17 16 5 19 19 O 1.35619 * 119.92189 * 180.02562 * 18 17 16 20 20 C 1.34760 * 116.99758 * 354.37702 * 19 18 17 21 21 H 1.08008 * 120.00105 * 5.06936 * 20 19 18 22 22 C 1.38701 * 120.00139 * 185.06246 * 20 19 18 23 23 N 1.31519 * 119.99764 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00325 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46776 * 59.99921 * 24 22 20 26 26 H 1.48494 * 109.47161 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.46915 * 300.00506 * 24 22 20 28 28 H 1.09003 * 109.47293 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47749 * 300.00536 * 1 2 3 30 30 H 1.09009 * 109.47262 * 60.00571 * 1 2 3 31 31 H 1.08002 * 120.07640 * 0.02562 * 4 3 2 32 32 H 1.08001 * 120.00506 * 359.96404 * 6 5 4 33 33 H 1.08002 * 119.99659 * 359.97438 * 7 6 5 34 34 H 0.96998 * 120.00117 * 359.97438 * 10 8 7 35 35 H 1.08995 * 109.46738 * 299.99701 * 11 10 8 36 36 H 1.08999 * 109.47013 * 59.99663 * 11 10 8 37 37 H 1.08998 * 109.46992 * 299.99947 * 12 11 10 38 38 H 1.08998 * 109.46782 * 59.99731 * 12 11 10 39 39 H 1.09003 * 109.47129 * 300.00312 * 13 12 11 40 40 H 1.09003 * 109.47459 * 59.99743 * 13 12 11 41 41 H 1.08998 * 109.46756 * 300.00117 * 14 13 12 42 42 H 1.09003 * 109.46983 * 59.99454 * 14 13 12 43 43 H 0.96701 * 114.00053 * 180.02562 * 15 14 13 44 44 H 1.08003 * 119.99766 * 180.29962 * 16 5 4 45 45 H 1.07997 * 119.92052 * 180.02562 * 17 16 5 46 46 H 0.97006 * 120.00234 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2115 0.0000 4 6 1.2941 2.3695 -0.0006 5 6 1.9331 3.6149 -0.0011 6 6 1.1378 4.8507 -0.0012 7 6 1.7558 6.0513 -0.0012 8 6 0.9643 7.2812 -0.0007 9 8 -0.2515 7.2225 -0.0008 10 7 1.5812 8.4795 -0.0012 11 6 0.7884 9.7115 -0.0002 12 6 1.7256 10.9209 -0.0004 13 6 0.8976 12.2075 0.0000 14 6 1.8346 13.4170 0.0005 15 8 1.0614 14.6187 0.0003 16 6 3.3318 3.6804 -0.0016 17 6 4.0751 2.5218 -0.0021 18 6 3.4404 1.2846 -0.0015 19 8 4.1775 0.1462 -0.0015 20 6 5.5130 0.2821 -0.1196 21 1 5.9572 1.2666 -0.1263 22 6 6.3173 -0.8423 -0.2324 23 7 5.7764 -2.0411 -0.2245 24 14 8.1687 -0.6540 -0.3954 25 1 8.7016 0.0500 0.7986 26 1 8.7955 -1.9961 -0.4989 27 1 8.4805 0.1340 -1.6147 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 0.2155 2.3143 -0.0007 32 1 0.0590 4.7987 -0.0014 33 1 2.8346 6.1033 -0.0007 34 1 2.5501 8.5262 -0.0016 35 1 0.1588 9.7390 -0.8895 36 1 0.1607 9.7388 0.8905 37 1 2.3549 10.8931 0.8891 38 1 2.3536 10.8937 -0.8909 39 1 0.2685 12.2351 -0.8897 40 1 0.2692 12.2349 0.8903 41 1 2.4633 13.3892 0.8904 42 1 2.4634 13.3898 -0.8895 43 1 1.5915 15.4275 0.0001 44 1 3.8275 4.6399 0.0029 45 1 5.1538 2.5739 -0.0020 46 1 6.3389 -2.8275 -0.3030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000279342566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:39 Heat of formation + Delta-G solvation = -120.499498 kcal Electronic energy + Delta-G solvation = -26794.126603 eV Core-core repulsion = 22650.154867 eV Total energy + Delta-G solvation = -4143.971736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.80199 -39.49393 -37.73504 -37.68460 -36.62155 -35.78300 -33.23913 -33.00387 -32.23811 -29.77648 -29.06943 -28.09397 -26.53352 -25.56810 -24.11549 -22.70555 -21.79151 -21.77137 -20.80758 -19.24785 -18.22506 -17.83135 -17.70616 -16.92451 -16.52577 -16.32468 -15.70969 -15.37330 -15.26974 -15.21076 -14.75378 -14.50066 -14.10345 -14.06553 -14.00050 -13.60726 -13.58422 -13.44918 -12.54449 -12.43301 -12.35968 -12.29290 -12.14347 -11.81998 -11.72513 -11.46722 -11.39859 -11.30929 -11.10536 -11.04644 -10.79393 -10.72706 -10.53075 -10.46198 -9.83193 -9.60020 -9.44438 -9.14825 -8.83634 -7.99795 -6.92898 -6.62944 -4.14448 1.01135 2.09842 2.52565 3.03698 3.05685 3.08346 3.12586 3.56578 3.78245 3.81812 3.93404 4.41618 4.44095 4.45557 4.79529 4.82151 4.87824 4.89586 4.98641 5.01625 5.12665 5.20987 5.28022 5.39008 5.41723 5.53471 5.53895 5.57355 5.63588 5.69693 5.75847 5.81370 5.83044 5.98547 6.19052 6.33354 6.41046 6.46314 6.57481 6.82906 6.98898 7.06949 7.12267 7.24318 7.45406 7.52917 7.77276 8.06385 8.32685 8.79862 9.48612 10.52699 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.001802 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.692460 B =15533.858524 C =17486.228740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.304 6.304 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.167 4.167 6 C 0.036 3.964 7 C -0.279 4.279 8 C 0.555 3.445 9 O -0.559 6.559 10 N -0.735 5.735 11 C 0.121 3.879 12 C -0.129 4.129 13 C -0.118 4.118 14 C 0.075 3.925 15 O -0.576 6.576 16 C -0.059 4.059 17 C -0.225 4.225 18 C 0.148 3.852 19 O -0.147 6.147 20 C -0.392 4.392 21 H 0.097 0.903 22 C 0.042 3.958 23 N -0.844 5.844 24 Si 0.945 3.055 25 H -0.268 1.268 26 H -0.276 1.276 27 H -0.267 1.267 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.124 0.876 34 H 0.400 0.600 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.380 0.620 44 H 0.116 0.884 45 H 0.137 0.863 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.353 22.141 0.257 22.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.155 4.155 5 C -0.168 4.168 6 C 0.016 3.984 7 C -0.300 4.300 8 C 0.347 3.653 9 O -0.440 6.440 10 N -0.387 5.387 11 C -0.002 4.002 12 C -0.167 4.167 13 C -0.157 4.157 14 C -0.002 4.002 15 O -0.382 6.382 16 C -0.077 4.077 17 C -0.245 4.245 18 C 0.092 3.908 19 O -0.048 6.048 20 C -0.467 4.467 21 H 0.114 0.886 22 C -0.165 4.165 23 N -0.476 5.476 24 Si 0.769 3.231 25 H -0.192 1.192 26 H -0.201 1.201 27 H -0.192 1.192 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.142 0.858 34 H 0.234 0.766 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.227 0.773 44 H 0.134 0.866 45 H 0.155 0.845 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.587 20.938 0.260 21.672 hybrid contribution 1.715 0.722 -0.073 1.862 sum -3.872 21.660 0.187 22.004 Atomic orbital electron populations 1.22921 0.80148 1.03086 1.00433 1.86236 1.19595 1.26201 1.89716 1.18046 0.89372 0.84608 1.07286 1.20888 0.98620 0.90921 1.05114 1.18171 0.92789 0.91415 1.14464 1.22240 0.99140 0.90969 0.86038 1.22455 0.99801 0.91629 1.16153 1.18418 0.87658 0.83922 0.75339 1.90777 1.14297 1.87756 1.51128 1.45851 1.10198 1.05574 1.77088 1.21239 0.93908 0.82590 1.02507 1.21692 0.98544 0.93350 1.03095 1.21410 0.98478 0.91870 1.03902 1.22184 0.93363 0.84853 0.99834 1.86476 1.37911 1.16076 1.97735 1.20925 0.92489 0.97347 0.96983 1.20828 1.00704 0.90748 1.12207 1.18887 0.88276 0.87654 0.96033 1.83990 1.19721 1.25859 1.75198 1.21471 0.78396 0.95063 1.51768 0.88562 1.25410 1.00890 0.94141 0.96074 1.70038 1.36776 0.97830 1.42960 0.85716 0.79778 0.78224 0.79407 1.19246 1.20074 1.19234 0.88952 0.93436 0.93428 0.85835 0.85982 0.85779 0.76583 0.91533 0.91546 0.90967 0.90971 0.90781 0.90790 0.93545 0.93552 0.77289 0.86610 0.84514 0.91521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.30 -6.47 10.28 -34.24 -0.35 -6.82 16 3 C 0.05 1.11 6.70 -39.12 -0.26 0.85 16 4 C -0.14 -2.45 8.77 -38.99 -0.34 -2.79 16 5 C -0.17 -2.87 5.87 -105.04 -0.62 -3.49 16 6 C 0.04 0.55 9.45 -37.19 -0.35 0.20 16 7 C -0.28 -3.80 9.41 -37.50 -0.35 -4.15 16 8 C 0.55 7.77 7.74 -13.04 -0.10 7.67 16 9 O -0.56 -9.85 16.23 5.17 0.08 -9.77 16 10 N -0.74 -7.40 5.55 -61.75 -0.34 -7.74 16 11 C 0.12 1.08 5.67 -4.04 -0.02 1.05 16 12 C -0.13 -0.74 5.33 -26.73 -0.14 -0.89 16 13 C -0.12 -0.75 5.58 -26.74 -0.15 -0.90 16 14 C 0.08 0.42 7.05 37.16 0.26 0.68 16 15 O -0.58 -3.94 13.66 -35.23 -0.48 -4.42 16 16 C -0.06 -1.03 9.40 -39.13 -0.37 -1.39 16 17 C -0.23 -4.61 9.14 -39.49 -0.36 -4.97 16 18 C 0.15 3.52 6.67 -38.76 -0.26 3.26 16 19 O -0.15 -4.11 9.52 -13.96 -0.13 -4.24 16 20 C -0.39 -10.44 9.48 30.90 0.29 -10.15 16 21 H 0.10 2.31 5.18 -52.48 -0.27 2.04 16 22 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 23 N -0.84 -23.85 13.67 55.48 0.76 -23.09 16 24 Si 0.94 19.37 29.55 -169.99 -5.02 14.35 16 25 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 26 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 27 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 30 H 0.05 0.63 7.66 -51.92 -0.40 0.23 16 31 H 0.12 1.88 6.28 -52.49 -0.33 1.55 16 32 H 0.12 1.85 7.52 -52.49 -0.39 1.45 16 33 H 0.12 1.44 6.06 -52.49 -0.32 1.12 16 34 H 0.40 2.91 8.45 -40.82 -0.34 2.57 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.38 0.86 9.12 45.56 0.42 1.27 16 44 H 0.12 1.63 6.15 -52.48 -0.32 1.31 16 45 H 0.14 2.71 5.62 -52.49 -0.29 2.41 16 46 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 392.64 15.07 5.92 5.92 Total: -1.00 -34.53 392.64 -7.05 -41.58 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -5.60 Total: 6.83 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: -1.88 Total: -12.60 kcal Atomic # 7 Polarization: -31.24 SS G_CDS: 0.42 Total: -30.83 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.88 Total: -25.25 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.53 -7.05 -41.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279342566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.921 kcal (2) G-P(sol) polarization free energy of solvation -34.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds