Wall clock time and date at job start Tue Mar 31 2020 18:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35963 * 116.99796 * 2 1 4 4 C 1.38078 * 120.00050 * 359.97114 * 3 2 1 5 5 C 1.39978 * 119.83607 * 180.02562 * 4 3 2 6 6 C 1.46963 * 120.07386 * 180.02562 * 5 4 3 7 7 C 1.35035 * 119.99832 * 179.97438 * 6 5 4 8 8 C 1.46253 * 119.99776 * 180.02562 * 7 6 5 9 9 O 1.21722 * 120.00371 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99535 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99808 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.46944 * 179.97438 * 11 10 8 13 13 C 1.52994 * 109.47003 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.47478 * 179.97438 * 13 12 11 15 15 O 1.42893 * 109.47564 * 179.97438 * 14 13 12 16 16 C 1.40025 * 119.84332 * 0.02562 * 5 4 3 17 17 C 1.37645 * 120.00280 * 0.02562 * 16 5 4 18 18 C 1.39056 * 120.15966 * 359.97438 * 17 16 5 19 19 O 1.35619 * 119.92189 * 180.02562 * 18 17 16 20 20 C 1.34760 * 116.99758 * 354.37702 * 19 18 17 21 21 H 1.08008 * 120.00105 * 5.06936 * 20 19 18 22 22 C 1.38701 * 120.00139 * 185.06246 * 20 19 18 23 23 N 1.31519 * 119.99764 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00325 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46776 * 59.99921 * 24 22 20 26 26 H 1.48494 * 109.47161 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.46915 * 300.00506 * 24 22 20 28 28 H 1.09003 * 109.47293 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47749 * 300.00536 * 1 2 3 30 30 H 1.09009 * 109.47262 * 60.00571 * 1 2 3 31 31 H 1.08002 * 120.07640 * 0.02562 * 4 3 2 32 32 H 1.08001 * 120.00506 * 359.96404 * 6 5 4 33 33 H 1.08002 * 119.99659 * 359.97438 * 7 6 5 34 34 H 0.96998 * 120.00117 * 359.97438 * 10 8 7 35 35 H 1.08995 * 109.46738 * 299.99701 * 11 10 8 36 36 H 1.08999 * 109.47013 * 59.99663 * 11 10 8 37 37 H 1.08998 * 109.46992 * 299.99947 * 12 11 10 38 38 H 1.08998 * 109.46782 * 59.99731 * 12 11 10 39 39 H 1.09003 * 109.47129 * 300.00312 * 13 12 11 40 40 H 1.09003 * 109.47459 * 59.99743 * 13 12 11 41 41 H 1.08998 * 109.46756 * 300.00117 * 14 13 12 42 42 H 1.09003 * 109.46983 * 59.99454 * 14 13 12 43 43 H 0.96701 * 114.00053 * 180.02562 * 15 14 13 44 44 H 1.08003 * 119.99766 * 180.29962 * 16 5 4 45 45 H 1.07997 * 119.92052 * 180.02562 * 17 16 5 46 46 H 0.97006 * 120.00234 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0461 1.2115 0.0000 4 6 1.2941 2.3695 -0.0006 5 6 1.9331 3.6149 -0.0011 6 6 1.1378 4.8507 -0.0012 7 6 1.7558 6.0513 -0.0012 8 6 0.9643 7.2812 -0.0007 9 8 -0.2515 7.2225 -0.0008 10 7 1.5812 8.4795 -0.0012 11 6 0.7884 9.7115 -0.0002 12 6 1.7256 10.9209 -0.0004 13 6 0.8976 12.2075 0.0000 14 6 1.8346 13.4170 0.0005 15 8 1.0614 14.6187 0.0003 16 6 3.3318 3.6804 -0.0016 17 6 4.0751 2.5218 -0.0021 18 6 3.4404 1.2846 -0.0015 19 8 4.1775 0.1462 -0.0015 20 6 5.5130 0.2821 -0.1196 21 1 5.9572 1.2666 -0.1263 22 6 6.3173 -0.8423 -0.2324 23 7 5.7764 -2.0411 -0.2245 24 14 8.1687 -0.6540 -0.3954 25 1 8.7016 0.0500 0.7986 26 1 8.7955 -1.9961 -0.4989 27 1 8.4805 0.1340 -1.6147 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3635 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8901 31 1 0.2155 2.3143 -0.0007 32 1 0.0590 4.7987 -0.0014 33 1 2.8346 6.1033 -0.0007 34 1 2.5501 8.5262 -0.0016 35 1 0.1588 9.7390 -0.8895 36 1 0.1607 9.7388 0.8905 37 1 2.3549 10.8931 0.8891 38 1 2.3536 10.8937 -0.8909 39 1 0.2685 12.2351 -0.8897 40 1 0.2692 12.2349 0.8903 41 1 2.4633 13.3892 0.8904 42 1 2.4634 13.3898 -0.8895 43 1 1.5915 15.4275 0.0001 44 1 3.8275 4.6399 0.0029 45 1 5.1538 2.5739 -0.0020 46 1 6.3389 -2.8275 -0.3030 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000279342566.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:55:39 Heat of formation + Delta-G solvation = -146.956921 kcal Electronic energy + Delta-G solvation = -26795.273883 eV Core-core repulsion = 22650.154867 eV Total energy + Delta-G solvation = -4145.119015 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.32041 -40.65215 -39.31197 -38.26965 -38.04799 -36.58496 -34.62432 -34.05356 -33.74602 -31.28784 -30.32148 -28.99427 -27.81388 -27.32660 -25.15115 -23.71821 -23.28712 -22.38434 -21.99559 -20.42698 -19.93514 -19.31487 -18.39527 -17.98117 -17.70531 -17.06809 -16.99820 -16.69635 -16.67966 -16.32448 -16.03955 -15.60099 -15.55935 -15.27892 -15.04000 -15.02038 -14.84697 -14.56075 -13.90607 -13.65466 -13.34896 -13.24140 -13.18725 -12.95857 -12.84739 -12.82488 -12.64656 -12.47944 -12.19920 -12.12990 -12.01959 -11.87097 -11.81138 -11.34030 -10.98986 -10.97875 -10.85769 -10.52479 -10.06798 -9.47279 -8.52786 -8.46301 -6.11038 -0.30625 0.54888 1.11333 1.37656 1.49863 1.54491 2.18021 2.24660 2.35734 2.55389 2.87056 3.14944 3.35191 3.37143 3.74792 3.92969 3.94627 3.95130 4.14619 4.25244 4.32630 4.32990 4.37103 4.40101 4.41565 4.46050 4.53047 4.63172 4.65184 4.70659 4.78854 4.82884 4.91039 4.96957 5.08023 5.12063 5.25755 5.29754 5.30385 5.45097 5.50855 5.52009 5.77869 5.92462 5.98374 6.59241 6.61459 6.90790 6.95971 7.28904 7.76095 8.75161 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.014048 B = 0.001802 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1992.692460 B =15533.858524 C =17486.228740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.344 6.344 3 C 0.038 3.962 4 C -0.135 4.135 5 C -0.133 4.133 6 C 0.010 3.990 7 C -0.237 4.237 8 C 0.547 3.453 9 O -0.597 6.597 10 N -0.715 5.715 11 C 0.119 3.881 12 C -0.115 4.115 13 C -0.120 4.120 14 C 0.074 3.926 15 O -0.602 6.602 16 C -0.065 4.065 17 C -0.218 4.218 18 C 0.101 3.899 19 O -0.213 6.213 20 C -0.417 4.417 21 H 0.111 0.889 22 C -0.022 4.022 23 N -0.914 5.914 24 Si 1.021 2.979 25 H -0.254 1.254 26 H -0.275 1.275 27 H -0.255 1.255 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.154 0.846 32 H 0.125 0.875 33 H 0.155 0.845 34 H 0.418 0.582 35 H 0.056 0.944 36 H 0.056 0.944 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.398 0.602 44 H 0.160 0.840 45 H 0.138 0.862 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.091 26.868 0.222 27.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.259 6.259 3 C -0.007 4.007 4 C -0.154 4.154 5 C -0.134 4.134 6 C -0.010 4.010 7 C -0.257 4.257 8 C 0.338 3.662 9 O -0.480 6.480 10 N -0.366 5.366 11 C -0.005 4.005 12 C -0.152 4.152 13 C -0.158 4.158 14 C -0.004 4.004 15 O -0.411 6.411 16 C -0.083 4.083 17 C -0.237 4.237 18 C 0.048 3.952 19 O -0.118 6.118 20 C -0.492 4.492 21 H 0.128 0.872 22 C -0.220 4.220 23 N -0.551 5.551 24 Si 0.840 3.160 25 H -0.178 1.178 26 H -0.200 1.200 27 H -0.179 1.179 28 H 0.128 0.872 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.172 0.828 32 H 0.143 0.857 33 H 0.173 0.827 34 H 0.255 0.745 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.105 0.895 38 H 0.105 0.895 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.248 0.752 44 H 0.177 0.823 45 H 0.156 0.844 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.337 25.785 0.229 26.333 hybrid contribution 1.152 -0.112 -0.046 1.158 sum -4.186 25.673 0.184 26.013 Atomic orbital electron populations 1.23274 0.77107 1.04983 1.02054 1.86189 1.22947 1.26906 1.89898 1.18382 0.89157 0.85771 1.07421 1.21260 1.00085 0.90111 1.03924 1.18540 0.93086 0.91975 1.09826 1.22130 0.99239 0.90510 0.89076 1.22819 1.01241 0.90874 1.10805 1.18566 0.87166 0.85090 0.75374 1.90782 1.16052 1.88371 1.52813 1.45750 1.11313 1.04848 1.74710 1.21335 0.94472 0.83182 1.01528 1.21578 0.97830 0.91270 1.04549 1.21406 0.98672 0.92846 1.02913 1.22238 0.93072 0.84024 1.01050 1.86424 1.39457 1.17381 1.97829 1.21302 0.92501 0.97974 0.96479 1.21047 1.01164 0.90765 1.10744 1.19595 0.89532 0.88195 0.97839 1.83978 1.20273 1.27851 1.79702 1.21961 0.78820 0.95956 1.52496 0.87199 1.26691 1.06202 0.93520 0.95620 1.70203 1.38615 0.98816 1.47440 0.84613 0.72996 0.78303 0.80092 1.17809 1.19975 1.17864 0.87215 0.91610 0.91687 0.82837 0.85734 0.82748 0.74465 0.92605 0.92604 0.89455 0.89471 0.91840 0.91841 0.92278 0.92293 0.75228 0.82290 0.84406 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.70 16 2 O -0.34 -15.27 10.28 -79.16 -0.81 -16.09 16 3 C 0.04 1.65 6.70 22.57 0.15 1.80 16 4 C -0.13 -4.63 8.77 22.65 0.20 -4.43 16 5 C -0.13 -4.14 5.87 -20.14 -0.12 -4.26 16 6 C 0.01 0.27 9.45 23.82 0.23 0.50 16 7 C -0.24 -5.19 9.41 23.62 0.22 -4.96 16 8 C 0.55 13.05 7.74 86.33 0.67 13.72 16 9 O -0.60 -19.38 16.23 -4.42 -0.07 -19.45 16 10 N -0.71 -11.20 5.55 -467.49 -2.60 -13.79 16 11 C 0.12 1.74 5.67 86.38 0.49 2.23 16 12 C -0.11 -0.89 5.33 30.59 0.16 -0.73 16 13 C -0.12 -1.24 5.58 30.59 0.17 -1.06 16 14 C 0.07 0.61 7.05 71.98 0.51 1.11 16 15 O -0.60 -7.03 13.66 -148.98 -2.03 -9.06 16 16 C -0.06 -2.04 9.40 22.56 0.21 -1.82 16 17 C -0.22 -8.86 9.14 22.33 0.20 -8.65 16 18 C 0.10 4.98 6.67 22.80 0.15 5.13 16 19 O -0.21 -12.81 9.52 -6.61 -0.06 -12.87 16 20 C -0.42 -23.63 9.48 67.93 0.64 -22.98 16 21 H 0.11 5.51 5.18 -2.91 -0.02 5.49 16 22 C -0.02 -1.21 5.49 84.85 0.47 -0.75 16 23 N -0.91 -55.79 13.67 21.62 0.30 -55.49 16 24 Si 1.02 41.33 29.55 68.60 2.03 43.35 16 25 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 26 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 27 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 28 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 29 H 0.07 1.63 7.66 -2.38 -0.02 1.61 16 30 H 0.06 1.62 7.66 -2.38 -0.02 1.61 16 31 H 0.15 4.24 6.28 -2.91 -0.02 4.22 16 32 H 0.12 3.32 7.52 -2.91 -0.02 3.30 16 33 H 0.16 2.47 6.06 -2.91 -0.02 2.45 16 34 H 0.42 3.71 8.45 -92.71 -0.78 2.92 16 35 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 42 H 0.06 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.40 0.98 9.12 -74.06 -0.68 0.31 16 44 H 0.16 3.56 6.15 -2.91 -0.02 3.54 16 45 H 0.14 5.46 5.62 -2.91 -0.02 5.44 16 46 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -83.38 392.64 1.79 -81.60 By element: Atomic # 1 Polarization: 25.71 SS G_CDS: -0.43 Total: 25.28 kcal Atomic # 6 Polarization: -28.94 SS G_CDS: 5.47 Total: -23.47 kcal Atomic # 7 Polarization: -66.98 SS G_CDS: -2.30 Total: -69.28 kcal Atomic # 8 Polarization: -54.49 SS G_CDS: -2.98 Total: -57.47 kcal Atomic # 14 Polarization: 41.33 SS G_CDS: 2.03 Total: 43.35 kcal Total: -83.38 1.79 -81.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000279342566.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.361 kcal (2) G-P(sol) polarization free energy of solvation -83.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds