Wall clock time and date at job start Tue Mar 31 2020 19:08:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 113.99798 * 2 1 4 4 C 1.53007 * 109.47020 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47217 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46737 * 305.00312 * 5 4 3 7 7 C 1.52994 * 109.47247 * 184.99662 * 5 4 3 8 8 O 1.42892 * 109.47375 * 305.00215 * 7 5 4 9 9 N 1.46502 * 109.46920 * 64.99646 * 5 4 3 10 10 C 1.34779 * 120.00004 * 204.99828 * 9 5 4 11 11 O 1.21718 * 119.99908 * 0.02562 * 10 9 5 12 12 C 1.46255 * 119.99865 * 179.97438 * 10 9 5 13 13 C 1.35018 * 120.00031 * 179.97438 * 12 10 9 14 14 C 1.46960 * 120.00380 * 180.02562 * 13 12 10 15 15 C 1.40026 * 120.10267 * 180.02562 * 14 13 12 16 16 C 1.37594 * 119.89660 * 179.97438 * 15 14 13 17 17 C 1.39178 * 120.10071 * 0.27233 * 16 15 14 18 18 O 1.35579 * 119.89553 * 179.70771 * 17 16 15 19 19 C 1.34781 * 117.00320 * 354.44312 * 18 17 16 20 20 H 1.08005 * 119.99725 * 5.05569 * 19 18 17 21 21 C 1.38715 * 120.00342 * 185.05925 * 19 18 17 22 22 N 1.31515 * 119.99717 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00159 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47164 * 59.99920 * 23 21 19 25 25 H 1.48499 * 109.46955 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46956 * 299.99763 * 23 21 19 27 27 C 1.39173 * 120.20477 * 359.44770 * 17 16 15 28 28 C 1.37597 * 120.09926 * 0.55723 * 27 17 16 29 29 H 1.09005 * 109.46799 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47410 * 300.00276 * 1 2 3 31 31 H 1.08992 * 109.47243 * 60.00261 * 1 2 3 32 32 H 1.08994 * 109.47819 * 59.99569 * 3 2 1 33 33 H 1.09000 * 109.47216 * 299.99429 * 3 2 1 34 34 H 1.08997 * 109.47256 * 59.99915 * 4 3 2 35 35 H 1.09000 * 109.47089 * 299.99136 * 4 3 2 36 36 H 1.09006 * 109.47053 * 65.00386 * 7 5 4 37 37 H 1.08999 * 109.47370 * 184.99949 * 7 5 4 38 38 H 0.96704 * 114.00435 * 179.97438 * 8 7 5 39 39 H 0.97004 * 120.00347 * 25.00647 * 9 5 4 40 40 H 1.08003 * 120.00046 * 0.02562 * 12 10 9 41 41 H 1.08003 * 119.99920 * 0.02562 * 13 12 10 42 42 H 1.08002 * 120.05214 * 359.95709 * 15 14 13 43 43 H 1.08001 * 119.95149 * 180.02562 * 16 15 14 44 44 H 0.96993 * 119.99812 * 180.02562 * 22 21 19 45 45 H 1.08004 * 119.95204 * 180.27325 * 27 17 16 46 46 H 1.08000 * 120.05069 * 179.74232 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1577 2.5824 -0.0013 6 1 3.7666 3.1538 -0.8431 7 6 5.6778 2.4638 -0.1276 8 8 6.1775 1.6182 0.9102 9 7 3.8236 3.2663 1.2505 10 6 3.8030 4.6131 1.2979 11 8 4.0617 5.2612 0.3006 12 6 3.4689 5.2957 2.5474 13 6 3.4488 6.6449 2.5951 14 6 3.1136 7.3310 3.8508 15 6 3.0916 8.7301 3.9025 16 6 2.7767 9.3681 5.0802 17 6 2.4858 8.6249 6.2204 18 8 2.1818 9.2579 7.3802 19 6 2.2913 10.6012 7.3912 20 1 2.5296 11.1310 6.4807 21 6 2.0979 11.3033 8.5718 22 7 1.8072 10.6581 9.6804 23 14 2.2489 13.1651 8.5868 24 1 1.2523 13.7501 7.6542 25 1 1.9988 13.6709 9.9604 26 1 3.6163 13.5542 8.1579 27 6 2.5007 7.2341 6.1724 28 6 2.8146 6.5875 4.9991 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8567 0.6439 -0.8908 35 1 3.8574 0.6437 0.8892 36 1 5.9295 2.0357 -1.0979 37 1 6.1281 3.4525 -0.0389 38 1 7.1368 1.4973 0.8915 39 1 3.6172 2.7498 2.0452 40 1 3.2389 4.7207 3.4322 41 1 3.6791 7.2200 1.7105 42 1 3.3218 9.3076 3.0193 43 1 2.7591 10.4472 5.1209 44 1 1.6716 11.1491 10.5058 45 1 2.2700 6.6614 7.0585 46 1 2.8300 5.5082 4.9637 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281175054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:47 Heat of formation + Delta-G solvation = -125.901003 kcal Electronic energy + Delta-G solvation = -27165.441027 eV Core-core repulsion = 23021.235065 eV Total energy + Delta-G solvation = -4144.205962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.97358 -39.17931 -38.29568 -37.39843 -36.84561 -35.10666 -33.22112 -32.35796 -31.83424 -30.43630 -29.00544 -27.96948 -26.54778 -25.69407 -23.89400 -23.15249 -22.19840 -21.25298 -20.61064 -19.34249 -18.19659 -17.82510 -17.14048 -17.06047 -16.72852 -16.44636 -16.01890 -15.33309 -15.10203 -14.88461 -14.77262 -14.45335 -14.31934 -13.90485 -13.88121 -13.81762 -13.55158 -13.13387 -13.03753 -12.66363 -12.58451 -12.13034 -11.93617 -11.79198 -11.72999 -11.65981 -11.46122 -11.34363 -11.11386 -11.08114 -10.71197 -10.55308 -10.35120 -10.01036 -9.78200 -9.61045 -9.50888 -9.16171 -8.85481 -8.38972 -7.12137 -6.65705 -4.20669 1.06222 2.12904 2.54652 3.03393 3.05059 3.07491 3.16975 3.33822 3.55227 3.81670 3.99188 4.50177 4.58333 4.63849 4.69707 4.91519 4.94328 5.00722 5.01973 5.04310 5.06696 5.12302 5.14528 5.26196 5.31608 5.33680 5.48027 5.52569 5.58967 5.66023 5.66402 5.86342 6.00663 6.11327 6.35286 6.46583 6.49263 6.60851 6.78510 6.79997 6.91037 7.12270 7.23020 7.27415 7.30388 7.55527 7.63287 7.79470 8.32136 8.78854 9.45792 10.50816 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.001769 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.417884 B =15822.201812 C =16506.054541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.394 6.394 3 C 0.059 3.941 4 C -0.120 4.120 5 C 0.153 3.847 6 H 0.100 0.900 7 C 0.065 3.935 8 O -0.568 6.568 9 N -0.723 5.723 10 C 0.557 3.443 11 O -0.563 6.563 12 C -0.283 4.283 13 C 0.039 3.961 14 C -0.199 4.199 15 C -0.035 4.035 16 C -0.242 4.242 17 C 0.167 3.833 18 O -0.162 6.162 19 C -0.393 4.393 20 H 0.097 0.903 21 C 0.042 3.958 22 N -0.852 5.852 23 Si 0.945 3.055 24 H -0.268 1.268 25 H -0.276 1.276 26 H -0.268 1.268 27 C -0.200 4.200 28 C -0.043 4.043 29 H 0.085 0.915 30 H 0.043 0.957 31 H 0.041 0.959 32 H 0.053 0.947 33 H 0.049 0.951 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.379 0.621 39 H 0.403 0.597 40 H 0.123 0.877 41 H 0.122 0.878 42 H 0.114 0.886 43 H 0.131 0.869 44 H 0.275 0.725 45 H 0.121 0.879 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.036 -16.576 -17.317 24.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.018 4.018 4 C -0.158 4.158 5 C 0.048 3.952 6 H 0.118 0.882 7 C -0.014 4.014 8 O -0.373 6.373 9 N -0.374 5.374 10 C 0.349 3.651 11 O -0.444 6.444 12 C -0.304 4.304 13 C 0.019 3.981 14 C -0.200 4.200 15 C -0.053 4.053 16 C -0.262 4.262 17 C 0.110 3.890 18 O -0.063 6.063 19 C -0.469 4.469 20 H 0.114 0.886 21 C -0.165 4.165 22 N -0.485 5.485 23 Si 0.769 3.231 24 H -0.193 1.193 25 H -0.201 1.201 26 H -0.192 1.192 27 C -0.219 4.219 28 C -0.061 4.061 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.225 0.775 39 H 0.238 0.762 40 H 0.141 0.859 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.149 0.851 44 H 0.085 0.915 45 H 0.139 0.861 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 2.547 -16.327 -17.355 23.964 hybrid contribution 0.357 0.969 0.243 1.061 sum 2.905 -15.357 -17.113 23.176 Atomic orbital electron populations 1.22746 0.80856 1.02742 1.00182 1.87848 1.19860 1.28065 1.95481 1.22576 0.93905 0.84595 1.00685 1.21672 0.92996 0.96177 1.04912 1.20917 0.92793 0.92720 0.88810 0.88166 1.22609 0.94560 0.94114 0.90136 1.86459 1.27124 1.70350 1.53409 1.45886 1.71912 1.06509 1.13109 1.18440 0.75993 0.81598 0.89038 1.90763 1.50784 1.65811 1.37020 1.22431 1.15195 0.95609 0.97165 1.22277 0.86329 0.93874 0.95650 1.18462 1.14891 0.93148 0.93533 1.20986 0.94559 0.93034 0.96759 1.21097 1.11205 1.00781 0.93089 1.19617 0.90710 0.91969 0.86675 1.83905 1.71420 1.22256 1.28700 1.21427 1.50045 0.78310 0.97113 0.88591 1.25398 0.96022 1.01026 0.94031 1.70005 1.41809 1.36908 0.99729 0.85711 0.79395 0.79835 0.78176 1.19253 1.20078 1.19248 1.20151 1.11152 0.91677 0.98905 1.20885 0.95343 0.98469 0.91384 0.89608 0.93880 0.94078 0.92862 0.93301 0.89823 0.89495 0.92904 0.92691 0.77471 0.76242 0.85905 0.85979 0.86832 0.85130 0.91536 0.86128 0.86406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -3.81 10.70 -35.23 -0.38 -4.18 16 3 C 0.06 0.50 5.83 37.16 0.22 0.72 16 4 C -0.12 -0.96 4.84 -26.73 -0.13 -1.09 16 5 C 0.15 1.39 2.37 -67.93 -0.16 1.23 16 6 H 0.10 0.99 7.58 -51.93 -0.39 0.60 16 7 C 0.06 0.54 6.85 37.15 0.25 0.80 16 8 O -0.57 -4.66 12.83 -35.23 -0.45 -5.11 16 9 N -0.72 -7.47 4.47 -55.25 -0.25 -7.72 16 10 C 0.56 7.55 7.70 -13.04 -0.10 7.45 16 11 O -0.56 -9.32 15.89 5.17 0.08 -9.23 16 12 C -0.28 -3.83 9.41 -37.51 -0.35 -4.18 16 13 C 0.04 0.58 9.45 -37.19 -0.35 0.23 16 14 C -0.20 -3.38 5.87 -105.03 -0.62 -4.00 16 15 C -0.03 -0.62 9.78 -39.15 -0.38 -1.00 16 16 C -0.24 -5.00 9.14 -39.47 -0.36 -5.36 16 17 C 0.17 3.83 6.66 -38.89 -0.26 3.57 16 18 O -0.16 -4.39 9.74 0.71 0.01 -4.38 16 19 C -0.39 -10.43 9.48 30.91 0.29 -10.14 16 20 H 0.10 2.33 5.18 -52.48 -0.27 2.06 16 21 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 22 N -0.85 -23.80 13.67 55.48 0.76 -23.04 16 23 Si 0.94 19.47 29.55 -169.99 -5.02 14.44 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 25 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 27 C -0.20 -3.99 9.97 -39.47 -0.39 -4.38 16 28 C -0.04 -0.73 9.40 -39.15 -0.37 -1.09 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.05 0.46 7.75 -51.93 -0.40 0.05 16 33 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.09 0.77 7.73 -51.93 -0.40 0.36 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 38 H 0.38 1.64 9.12 45.56 0.42 2.06 16 39 H 0.40 3.58 8.58 -40.82 -0.35 3.23 16 40 H 0.12 1.46 6.07 -52.48 -0.32 1.14 16 41 H 0.12 1.82 7.52 -52.48 -0.39 1.43 16 42 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 43 H 0.13 2.66 5.62 -52.49 -0.29 2.36 16 44 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 46 H 0.12 1.65 6.16 -52.49 -0.32 1.32 16 LS Contribution 394.16 15.07 5.94 5.94 Total: -1.00 -32.17 394.16 -6.68 -38.85 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -5.68 Total: 9.37 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: -1.70 Total: -14.93 kcal Atomic # 7 Polarization: -31.27 SS G_CDS: 0.51 Total: -30.76 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.74 Total: -22.91 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.17 -6.68 -38.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281175054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.052 kcal (2) G-P(sol) polarization free energy of solvation -32.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds