Wall clock time and date at job start Tue Mar 31 2020 19:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 113.99798 * 2 1 4 4 C 1.53007 * 109.47020 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47217 * 179.97438 * 4 3 2 6 6 H 1.09002 * 109.46737 * 305.00312 * 5 4 3 7 7 C 1.52994 * 109.47247 * 184.99662 * 5 4 3 8 8 O 1.42892 * 109.47375 * 305.00215 * 7 5 4 9 9 N 1.46502 * 109.46920 * 64.99646 * 5 4 3 10 10 C 1.34779 * 120.00004 * 204.99828 * 9 5 4 11 11 O 1.21718 * 119.99908 * 0.02562 * 10 9 5 12 12 C 1.46255 * 119.99865 * 179.97438 * 10 9 5 13 13 C 1.35018 * 120.00031 * 179.97438 * 12 10 9 14 14 C 1.46960 * 120.00380 * 180.02562 * 13 12 10 15 15 C 1.40026 * 120.10267 * 180.02562 * 14 13 12 16 16 C 1.37594 * 119.89660 * 179.97438 * 15 14 13 17 17 C 1.39178 * 120.10071 * 0.27233 * 16 15 14 18 18 O 1.35579 * 119.89553 * 179.70771 * 17 16 15 19 19 C 1.34781 * 117.00320 * 354.44312 * 18 17 16 20 20 H 1.08005 * 119.99725 * 5.05569 * 19 18 17 21 21 C 1.38715 * 120.00342 * 185.05925 * 19 18 17 22 22 N 1.31515 * 119.99717 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 120.00159 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47164 * 59.99920 * 23 21 19 25 25 H 1.48499 * 109.46955 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.46956 * 299.99763 * 23 21 19 27 27 C 1.39173 * 120.20477 * 359.44770 * 17 16 15 28 28 C 1.37597 * 120.09926 * 0.55723 * 27 17 16 29 29 H 1.09005 * 109.46799 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47410 * 300.00276 * 1 2 3 31 31 H 1.08992 * 109.47243 * 60.00261 * 1 2 3 32 32 H 1.08994 * 109.47819 * 59.99569 * 3 2 1 33 33 H 1.09000 * 109.47216 * 299.99429 * 3 2 1 34 34 H 1.08997 * 109.47256 * 59.99915 * 4 3 2 35 35 H 1.09000 * 109.47089 * 299.99136 * 4 3 2 36 36 H 1.09006 * 109.47053 * 65.00386 * 7 5 4 37 37 H 1.08999 * 109.47370 * 184.99949 * 7 5 4 38 38 H 0.96704 * 114.00435 * 179.97438 * 8 7 5 39 39 H 0.97004 * 120.00347 * 25.00647 * 9 5 4 40 40 H 1.08003 * 120.00046 * 0.02562 * 12 10 9 41 41 H 1.08003 * 119.99920 * 0.02562 * 13 12 10 42 42 H 1.08002 * 120.05214 * 359.95709 * 15 14 13 43 43 H 1.08001 * 119.95149 * 180.02562 * 16 15 14 44 44 H 0.96993 * 119.99812 * 180.02562 * 22 21 19 45 45 H 1.08004 * 119.95204 * 180.27325 * 27 17 16 46 46 H 1.08000 * 120.05069 * 179.74232 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1577 2.5824 -0.0013 6 1 3.7666 3.1538 -0.8431 7 6 5.6778 2.4638 -0.1276 8 8 6.1775 1.6182 0.9102 9 7 3.8236 3.2663 1.2505 10 6 3.8030 4.6131 1.2979 11 8 4.0617 5.2612 0.3006 12 6 3.4689 5.2957 2.5474 13 6 3.4488 6.6449 2.5951 14 6 3.1136 7.3310 3.8508 15 6 3.0916 8.7301 3.9025 16 6 2.7767 9.3681 5.0802 17 6 2.4858 8.6249 6.2204 18 8 2.1818 9.2579 7.3802 19 6 2.2913 10.6012 7.3912 20 1 2.5296 11.1310 6.4807 21 6 2.0979 11.3033 8.5718 22 7 1.8072 10.6581 9.6804 23 14 2.2489 13.1651 8.5868 24 1 1.2523 13.7501 7.6542 25 1 1.9988 13.6709 9.9604 26 1 3.6163 13.5542 8.1579 27 6 2.5007 7.2341 6.1724 28 6 2.8146 6.5875 4.9991 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5137 -0.8899 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8567 0.6439 -0.8908 35 1 3.8574 0.6437 0.8892 36 1 5.9295 2.0357 -1.0979 37 1 6.1281 3.4525 -0.0389 38 1 7.1368 1.4973 0.8915 39 1 3.6172 2.7498 2.0452 40 1 3.2389 4.7207 3.4322 41 1 3.6791 7.2200 1.7105 42 1 3.3218 9.3076 3.0193 43 1 2.7591 10.4472 5.1209 44 1 1.6716 11.1491 10.5058 45 1 2.2700 6.6614 7.0585 46 1 2.8300 5.5082 4.9637 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281175054.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:46 Heat of formation + Delta-G solvation = -149.827693 kcal Electronic energy + Delta-G solvation = -27166.478566 eV Core-core repulsion = 23021.235065 eV Total energy + Delta-G solvation = -4145.243501 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.03215 -40.74659 -39.06756 -38.51743 -38.01493 -35.90354 -34.73068 -34.01020 -32.73591 -31.96563 -29.97791 -29.12823 -27.49652 -27.12472 -25.02455 -24.03179 -23.68833 -22.43031 -21.54990 -20.68232 -19.74634 -18.84011 -18.61272 -18.07556 -17.48747 -17.18775 -16.77961 -16.45571 -16.39745 -16.08176 -15.97704 -15.81820 -15.61719 -15.32986 -15.04189 -14.73422 -14.60220 -14.53036 -14.10936 -13.92937 -13.59577 -13.37382 -13.28602 -13.14337 -12.74152 -12.67991 -12.55961 -12.31712 -12.22695 -12.14903 -12.12714 -11.98721 -11.21760 -11.10985 -11.07616 -10.82578 -10.65199 -10.57204 -10.05971 -9.89458 -8.67966 -8.52077 -6.18322 -0.24153 0.58344 1.14118 1.35654 1.47324 1.51509 2.15428 2.24765 2.37604 2.72628 2.86454 3.17671 3.40110 3.42416 3.79701 3.91616 3.94442 4.01157 4.06180 4.08721 4.30721 4.34404 4.35907 4.44485 4.47653 4.48995 4.51802 4.53982 4.63280 4.67585 4.78574 4.85645 4.94437 4.96875 5.03006 5.17674 5.19789 5.28589 5.33963 5.52259 5.59836 5.63844 5.81810 5.97186 6.10516 6.19191 6.60442 6.87444 6.92063 7.28154 7.69218 8.69754 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.001769 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.417884 B =15822.201812 C =16506.054541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.058 3.942 4 C -0.107 4.107 5 C 0.150 3.850 6 H 0.094 0.906 7 C 0.069 3.931 8 O -0.580 6.580 9 N -0.707 5.707 10 C 0.553 3.447 11 O -0.592 6.592 12 C -0.247 4.247 13 C 0.016 3.984 14 C -0.171 4.171 15 C -0.040 4.040 16 C -0.249 4.249 17 C 0.129 3.871 18 O -0.220 6.220 19 C -0.417 4.417 20 H 0.106 0.894 21 C -0.019 4.019 22 N -0.914 5.914 23 Si 1.019 2.981 24 H -0.257 1.257 25 H -0.272 1.272 26 H -0.257 1.257 27 C -0.208 4.208 28 C -0.038 4.038 29 H 0.098 0.902 30 H 0.046 0.954 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.093 0.907 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.036 0.964 38 H 0.395 0.605 39 H 0.413 0.587 40 H 0.148 0.852 41 H 0.126 0.874 42 H 0.145 0.855 43 H 0.125 0.875 44 H 0.275 0.725 45 H 0.122 0.878 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.865 -18.569 -20.330 27.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C -0.019 4.019 4 C -0.145 4.145 5 C 0.045 3.955 6 H 0.112 0.888 7 C -0.010 4.010 8 O -0.388 6.388 9 N -0.358 5.358 10 C 0.344 3.656 11 O -0.475 6.475 12 C -0.268 4.268 13 C -0.003 4.003 14 C -0.171 4.171 15 C -0.058 4.058 16 C -0.268 4.268 17 C 0.077 3.923 18 O -0.125 6.125 19 C -0.493 4.493 20 H 0.123 0.877 21 C -0.218 4.218 22 N -0.550 5.550 23 Si 0.838 3.162 24 H -0.181 1.181 25 H -0.196 1.196 26 H -0.181 1.181 27 C -0.227 4.227 28 C -0.056 4.056 29 H 0.116 0.884 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.054 0.946 38 H 0.245 0.755 39 H 0.249 0.751 40 H 0.165 0.835 41 H 0.144 0.856 42 H 0.163 0.837 43 H 0.143 0.857 44 H 0.084 0.916 45 H 0.140 0.860 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.400 -18.394 -20.429 27.699 hybrid contribution 0.213 1.063 0.686 1.283 sum 3.613 -17.331 -19.743 26.518 Atomic orbital electron populations 1.22911 0.79695 1.03820 1.00682 1.87817 1.21245 1.28610 1.95587 1.22609 0.94157 0.84376 1.00739 1.21554 0.92598 0.95249 1.05131 1.21043 0.93660 0.92999 0.87792 0.88797 1.22511 0.93635 0.93476 0.91371 1.86411 1.28894 1.70069 1.53425 1.45826 1.70217 1.05596 1.14129 1.18472 0.76027 0.82507 0.88546 1.90769 1.52070 1.66672 1.37966 1.22769 1.10835 0.95318 0.97861 1.22164 0.88804 0.94522 0.94848 1.18790 1.11169 0.93006 0.94181 1.21321 0.93889 0.93877 0.96700 1.21206 1.11337 1.00714 0.93564 1.20190 0.92067 0.93371 0.86643 1.83886 1.75257 1.22538 1.30781 1.21860 1.50727 0.78856 0.97857 0.87695 1.26623 0.95558 1.06237 0.93378 1.70144 1.45443 1.38916 1.00537 0.84644 0.79898 0.73283 0.78424 1.18078 1.19616 1.18144 1.20415 1.11148 0.90762 1.00349 1.21277 0.93847 1.00428 0.90039 0.88379 0.93563 0.93374 0.92999 0.93054 0.88865 0.89963 0.90662 0.94581 0.75504 0.75077 0.83498 0.85572 0.83710 0.85705 0.91593 0.86014 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.07 10.70 -148.98 -1.59 -8.67 16 3 C 0.06 0.84 5.83 71.98 0.42 1.26 16 4 C -0.11 -1.41 4.84 30.60 0.15 -1.26 16 5 C 0.15 2.29 2.37 44.99 0.11 2.40 16 6 H 0.09 1.62 7.58 -2.39 -0.02 1.60 16 7 C 0.07 0.96 6.85 71.98 0.49 1.46 16 8 O -0.58 -7.71 12.83 -148.98 -1.91 -9.62 16 9 N -0.71 -12.19 4.47 -446.91 -2.00 -14.19 16 10 C 0.55 13.05 7.70 86.33 0.66 13.72 16 11 O -0.59 -17.98 15.89 -4.41 -0.07 -18.05 16 12 C -0.25 -5.59 9.41 23.61 0.22 -5.37 16 13 C 0.02 0.43 9.45 23.82 0.23 0.66 16 14 C -0.17 -5.28 5.87 -20.13 -0.12 -5.40 16 15 C -0.04 -1.34 9.78 22.55 0.22 -1.12 16 16 C -0.25 -10.41 9.14 22.34 0.20 -10.20 16 17 C 0.13 6.17 6.66 22.72 0.15 6.32 16 18 O -0.22 -12.73 9.74 -20.36 -0.20 -12.93 16 19 C -0.42 -23.47 9.48 67.93 0.64 -22.82 16 20 H 0.11 5.37 5.18 -2.91 -0.02 5.36 16 21 C -0.02 -1.06 5.49 84.85 0.47 -0.59 16 22 N -0.91 -54.42 13.67 21.62 0.30 -54.13 16 23 Si 1.02 41.42 29.55 68.60 2.03 43.45 16 24 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 25 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 26 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 27 C -0.21 -8.31 9.97 22.34 0.22 -8.08 16 28 C -0.04 -1.20 9.40 22.55 0.21 -0.99 16 29 H 0.10 0.89 8.14 -2.38 -0.02 0.88 16 30 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.75 7.75 -2.39 -0.02 0.73 16 33 H 0.05 0.71 8.14 -2.39 -0.02 0.70 16 34 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.20 7.73 -2.39 -0.02 1.18 16 36 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 38 H 0.40 2.26 9.12 -74.05 -0.68 1.59 16 39 H 0.41 5.69 8.58 -92.71 -0.80 4.90 16 40 H 0.15 2.62 6.07 -2.91 -0.02 2.61 16 41 H 0.13 3.33 7.52 -2.91 -0.02 3.31 16 42 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 43 H 0.13 5.26 5.62 -2.91 -0.02 5.24 16 44 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 45 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 46 H 0.16 3.63 6.16 -2.91 -0.02 3.61 16 Total: -1.00 -74.48 394.16 1.63 -72.84 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.45 Total: 29.76 kcal Atomic # 6 Polarization: -34.01 SS G_CDS: 5.53 Total: -28.48 kcal Atomic # 7 Polarization: -66.61 SS G_CDS: -1.70 Total: -68.31 kcal Atomic # 8 Polarization: -45.49 SS G_CDS: -3.77 Total: -49.27 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Total: -74.48 1.63 -72.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281175054.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.983 kcal (2) G-P(sol) polarization free energy of solvation -74.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds