Wall clock time and date at job start Tue Mar 31 2020 18:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35954 * 116.99886 * 2 1 4 4 C 1.38073 * 120.00289 * 359.97438 * 3 2 1 5 5 C 1.39979 * 119.84264 * 179.97438 * 4 3 2 6 6 C 1.46962 * 120.08029 * 179.97438 * 5 4 3 7 7 C 1.35026 * 120.00149 * 180.02562 * 6 5 4 8 8 C 1.46251 * 120.00107 * 179.72723 * 7 6 5 9 9 O 1.21724 * 120.00176 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00252 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99610 * 0.02562 * 10 8 7 12 12 C 1.46497 * 120.00679 * 179.97438 * 10 8 7 13 13 C 1.52999 * 109.47190 * 89.99805 * 12 10 8 14 14 C 1.53002 * 109.47277 * 180.02562 * 13 12 10 15 15 O 1.42897 * 109.46926 * 180.02562 * 14 13 12 16 16 C 1.40030 * 119.84099 * 0.25534 * 5 4 3 17 17 C 1.37651 * 119.99651 * 359.48870 * 16 5 4 18 18 C 1.39049 * 120.16215 * 0.50959 * 17 16 5 19 19 O 1.35623 * 119.91983 * 179.76593 * 18 17 16 20 20 C 1.34757 * 116.99899 * 354.38344 * 19 18 17 21 21 H 1.08003 * 120.00150 * 5.06176 * 20 19 18 22 22 C 1.38705 * 120.00042 * 185.06816 * 20 19 18 23 23 N 1.31524 * 119.99707 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00195 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46966 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47555 * 119.99863 * 24 22 20 27 27 H 1.48503 * 109.46769 * 239.99632 * 24 22 20 28 28 H 1.09001 * 109.47164 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47140 * 299.99904 * 1 2 3 30 30 H 1.09002 * 109.47026 * 60.00206 * 1 2 3 31 31 H 1.08004 * 120.08220 * 359.95509 * 4 3 2 32 32 H 1.07999 * 120.00384 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.99930 * 0.02562 * 7 6 5 34 34 H 1.08999 * 109.47535 * 90.00073 * 11 10 8 35 35 H 1.09011 * 109.46779 * 209.99572 * 11 10 8 36 36 H 1.09000 * 109.47068 * 329.99430 * 11 10 8 37 37 H 1.08996 * 109.47640 * 210.00743 * 12 10 8 38 38 H 1.09006 * 109.46604 * 330.00469 * 12 10 8 39 39 H 1.08991 * 109.47153 * 300.00803 * 13 12 10 40 40 H 1.09006 * 109.46806 * 60.00787 * 13 12 10 41 41 H 1.08997 * 109.46880 * 300.00700 * 14 13 12 42 42 H 1.08999 * 109.46410 * 60.00372 * 14 13 12 43 43 H 0.96700 * 113.99483 * 180.02562 * 15 14 13 44 44 H 1.08004 * 120.00196 * 179.74145 * 16 5 4 45 45 H 1.08004 * 119.91893 * 180.23858 * 17 16 5 46 46 H 0.97008 * 119.99772 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 -0.0005 5 6 1.9332 3.6148 0.0000 6 6 1.1379 4.8507 -0.0011 7 6 1.7559 6.0512 -0.0011 8 6 0.9645 7.2811 -0.0083 9 8 -0.2513 7.2225 -0.0147 10 7 1.5813 8.4794 -0.0078 11 6 3.0447 8.5500 -0.0006 12 6 0.7887 9.7114 -0.0155 13 6 0.5043 10.1440 1.4243 14 6 -0.3240 11.4303 1.4162 15 8 -0.5891 11.8346 2.7609 16 6 3.3319 3.6804 -0.0043 17 6 4.0752 2.5218 0.0015 18 6 3.4405 1.2846 0.0011 19 8 4.1776 0.1461 0.0021 20 6 5.5133 0.2821 -0.1140 21 1 5.9574 1.2665 -0.1201 22 6 6.3177 -0.8424 -0.2259 23 7 5.7768 -2.0412 -0.2181 24 14 8.1692 -0.6540 -0.3861 25 1 8.5235 0.7880 -0.3681 26 1 8.8369 -1.3424 0.7477 27 1 8.6192 -1.2580 -1.6660 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2156 2.3144 -0.0017 32 1 0.0592 4.7987 -0.0020 33 1 2.8347 6.1033 -0.0007 34 1 3.4128 8.5653 -1.0264 35 1 3.3621 9.4576 0.5129 36 1 3.4478 7.6797 0.5172 37 1 1.3434 10.4972 -0.5282 38 1 -0.1534 9.5340 -0.5343 39 1 -0.0503 9.3582 1.9369 40 1 1.4465 10.3214 1.9431 41 1 0.2304 12.2162 0.9034 42 1 -1.2660 11.2524 0.8975 43 1 -1.1117 12.6450 2.8322 44 1 3.8276 4.6399 -0.0081 45 1 5.1540 2.5738 0.0021 46 1 6.3395 -2.8276 -0.2960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281992043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:15 Heat of formation + Delta-G solvation = -102.778682 kcal Electronic energy + Delta-G solvation = -27604.268683 eV Core-core repulsion = 23461.065380 eV Total energy + Delta-G solvation = -4143.203303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.95294 -39.63679 -37.68318 -37.47479 -36.60799 -35.75650 -33.23549 -32.51463 -31.99634 -29.75745 -28.72543 -27.25223 -26.73580 -25.86944 -25.26976 -23.17818 -21.95288 -21.67929 -20.34954 -18.58864 -18.20611 -17.92578 -17.66963 -17.04624 -16.43811 -15.84329 -15.77322 -15.40349 -15.22688 -15.18042 -14.71743 -14.26822 -14.02922 -13.99037 -13.60486 -13.48511 -13.36937 -13.24027 -13.11434 -12.69101 -12.54497 -12.35264 -11.99471 -11.81617 -11.69669 -11.49639 -11.43932 -11.28487 -11.14266 -11.01249 -10.79581 -10.69076 -10.50564 -10.33097 -9.77710 -9.58523 -9.42908 -8.90263 -8.76676 -7.99647 -6.92768 -6.63158 -4.14373 1.00202 2.09884 2.50805 2.90029 3.03772 3.04741 3.10777 3.52624 3.81742 3.93012 3.94467 4.45547 4.51222 4.77387 4.81949 4.88907 4.93103 4.98737 4.99910 5.06155 5.13641 5.21636 5.32419 5.37883 5.42520 5.50549 5.53978 5.55596 5.60835 5.70707 5.78885 5.82959 5.91969 5.98930 6.18969 6.30208 6.42982 6.49140 6.58802 6.83028 6.98576 7.07417 7.24099 7.24884 7.35633 7.45990 7.77444 8.06489 8.26862 8.80028 9.48921 10.52709 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.002122 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.574504 B =13193.969057 C =14661.517231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.136 4.136 5 C -0.166 4.166 6 C 0.037 3.963 7 C -0.281 4.281 8 C 0.556 3.444 9 O -0.556 6.556 10 N -0.620 5.620 11 C 0.079 3.921 12 C 0.121 3.879 13 C -0.137 4.137 14 C 0.079 3.921 15 O -0.575 6.575 16 C -0.059 4.059 17 C -0.225 4.225 18 C 0.149 3.851 19 O -0.147 6.147 20 C -0.390 4.390 21 H 0.098 0.902 22 C 0.041 3.959 23 N -0.844 5.844 24 Si 0.945 3.055 25 H -0.264 1.264 26 H -0.274 1.274 27 H -0.274 1.274 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.045 0.955 42 H 0.048 0.952 43 H 0.379 0.621 44 H 0.115 0.885 45 H 0.138 0.862 46 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.804 20.877 0.057 21.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.155 4.155 5 C -0.168 4.168 6 C 0.017 3.983 7 C -0.302 4.302 8 C 0.350 3.650 9 O -0.437 6.437 10 N -0.354 5.354 11 C -0.065 4.065 12 C -0.002 4.002 13 C -0.176 4.176 14 C 0.001 3.999 15 O -0.380 6.380 16 C -0.077 4.077 17 C -0.244 4.244 18 C 0.092 3.908 19 O -0.048 6.048 20 C -0.466 4.466 21 H 0.116 0.884 22 C -0.166 4.166 23 N -0.476 5.476 24 Si 0.769 3.231 25 H -0.188 1.188 26 H -0.199 1.199 27 H -0.199 1.199 28 H 0.110 0.890 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.142 0.858 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.075 0.925 35 H 0.087 0.913 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.226 0.774 44 H 0.133 0.867 45 H 0.155 0.845 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.940 19.579 0.173 20.773 hybrid contribution 0.501 0.849 -0.210 1.008 sum -6.439 20.428 -0.036 21.419 Atomic orbital electron populations 1.22919 0.80156 1.03082 1.00431 1.86236 1.19584 1.26186 1.89708 1.18046 0.89382 0.84612 1.07263 1.20884 0.98616 0.90917 1.05116 1.18168 0.92784 0.91395 1.14434 1.22256 0.99123 0.90999 0.85921 1.22553 0.99973 0.91538 1.16142 1.18452 0.87487 0.83804 0.75212 1.90763 1.14235 1.87374 1.51284 1.47641 1.07007 1.05679 1.75029 1.21842 0.79383 1.03268 1.01960 1.21218 0.97159 0.85995 0.95835 1.21894 1.00730 0.96977 0.97995 1.22070 0.98479 0.95997 0.83340 1.86496 1.76791 1.47544 1.27177 1.20918 0.92481 0.97319 0.97016 1.20832 1.00718 0.90736 1.12152 1.18884 0.88272 0.87654 0.96007 1.83991 1.19740 1.25855 1.75220 1.21567 0.78355 0.95108 1.51543 0.88449 1.25423 1.00919 0.94155 0.96112 1.70062 1.36565 0.97825 1.43162 0.85578 0.79900 0.79103 0.78479 1.18826 1.19917 1.19919 0.88957 0.93434 0.93433 0.85846 0.86026 0.85496 0.92483 0.91345 0.90300 0.90636 0.89728 0.90619 0.91180 0.93640 0.93367 0.77410 0.86683 0.84488 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.30 -6.46 10.28 -34.21 -0.35 -6.81 16 3 C 0.05 1.11 6.70 -39.13 -0.26 0.85 16 4 C -0.14 -2.46 8.77 -38.99 -0.34 -2.80 16 5 C -0.17 -2.88 5.87 -105.04 -0.62 -3.50 16 6 C 0.04 0.57 9.45 -37.19 -0.35 0.22 16 7 C -0.28 -3.94 8.60 -37.51 -0.32 -4.27 16 8 C 0.56 8.07 7.60 -13.04 -0.10 7.97 16 9 O -0.56 -9.79 15.81 5.17 0.08 -9.71 16 10 N -0.62 -6.87 2.87 -183.28 -0.53 -7.40 16 11 C 0.08 0.62 10.15 59.85 0.61 1.23 16 12 C 0.12 1.12 5.41 -4.04 -0.02 1.10 16 13 C -0.14 -1.31 5.91 -26.73 -0.16 -1.47 16 14 C 0.08 0.60 7.05 37.16 0.26 0.86 16 15 O -0.57 -5.01 13.66 -35.23 -0.48 -5.49 16 16 C -0.06 -1.03 9.40 -39.12 -0.37 -1.40 16 17 C -0.22 -4.61 9.14 -39.50 -0.36 -4.97 16 18 C 0.15 3.53 6.67 -38.76 -0.26 3.27 16 19 O -0.15 -4.12 9.52 -13.96 -0.13 -4.25 16 20 C -0.39 -10.41 9.48 30.91 0.29 -10.12 16 21 H 0.10 2.35 5.18 -52.48 -0.27 2.08 16 22 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 23 N -0.84 -23.90 13.67 55.48 0.76 -23.14 16 24 Si 0.95 19.44 29.55 -169.99 -5.02 14.41 16 25 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 26 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 27 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.05 0.62 7.66 -51.93 -0.40 0.23 16 30 H 0.05 0.63 7.66 -51.93 -0.40 0.23 16 31 H 0.12 1.88 6.28 -52.48 -0.33 1.55 16 32 H 0.12 1.86 7.52 -52.49 -0.39 1.47 16 33 H 0.13 1.54 4.21 -52.48 -0.22 1.32 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.41 8.07 -51.92 -0.42 -0.01 16 36 H 0.08 0.62 6.10 -51.93 -0.32 0.31 16 37 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 38 H 0.08 0.89 7.42 -51.93 -0.39 0.50 16 39 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.38 1.43 9.12 45.56 0.42 1.84 16 44 H 0.12 1.64 6.15 -52.48 -0.32 1.31 16 45 H 0.14 2.73 5.61 -52.48 -0.29 2.43 16 46 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -34.54 388.41 -6.35 -40.89 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -5.43 Total: 6.24 kcal Atomic # 6 Polarization: -9.50 SS G_CDS: -1.10 Total: -10.60 kcal Atomic # 7 Polarization: -30.77 SS G_CDS: 0.23 Total: -30.54 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.88 Total: -26.26 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.41 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.54 -6.35 -40.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281992043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.884 kcal (2) G-P(sol) polarization free energy of solvation -34.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds