Wall clock time and date at job start Tue Mar 31 2020 18:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35954 * 116.99886 * 2 1 4 4 C 1.38073 * 120.00289 * 359.97438 * 3 2 1 5 5 C 1.39979 * 119.84264 * 179.97438 * 4 3 2 6 6 C 1.46962 * 120.08029 * 179.97438 * 5 4 3 7 7 C 1.35026 * 120.00149 * 180.02562 * 6 5 4 8 8 C 1.46251 * 120.00107 * 179.72723 * 7 6 5 9 9 O 1.21724 * 120.00176 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00252 * 179.97438 * 8 7 6 11 11 C 1.46505 * 119.99610 * 0.02562 * 10 8 7 12 12 C 1.46497 * 120.00679 * 179.97438 * 10 8 7 13 13 C 1.52999 * 109.47190 * 89.99805 * 12 10 8 14 14 C 1.53002 * 109.47277 * 180.02562 * 13 12 10 15 15 O 1.42897 * 109.46926 * 180.02562 * 14 13 12 16 16 C 1.40030 * 119.84099 * 0.25534 * 5 4 3 17 17 C 1.37651 * 119.99651 * 359.48870 * 16 5 4 18 18 C 1.39049 * 120.16215 * 0.50959 * 17 16 5 19 19 O 1.35623 * 119.91983 * 179.76593 * 18 17 16 20 20 C 1.34757 * 116.99899 * 354.38344 * 19 18 17 21 21 H 1.08003 * 120.00150 * 5.06176 * 20 19 18 22 22 C 1.38705 * 120.00042 * 185.06816 * 20 19 18 23 23 N 1.31524 * 119.99707 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00195 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.46966 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47555 * 119.99863 * 24 22 20 27 27 H 1.48503 * 109.46769 * 239.99632 * 24 22 20 28 28 H 1.09001 * 109.47164 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47140 * 299.99904 * 1 2 3 30 30 H 1.09002 * 109.47026 * 60.00206 * 1 2 3 31 31 H 1.08004 * 120.08220 * 359.95509 * 4 3 2 32 32 H 1.07999 * 120.00384 * 0.02562 * 6 5 4 33 33 H 1.08004 * 119.99930 * 0.02562 * 7 6 5 34 34 H 1.08999 * 109.47535 * 90.00073 * 11 10 8 35 35 H 1.09011 * 109.46779 * 209.99572 * 11 10 8 36 36 H 1.09000 * 109.47068 * 329.99430 * 11 10 8 37 37 H 1.08996 * 109.47640 * 210.00743 * 12 10 8 38 38 H 1.09006 * 109.46604 * 330.00469 * 12 10 8 39 39 H 1.08991 * 109.47153 * 300.00803 * 13 12 10 40 40 H 1.09006 * 109.46806 * 60.00787 * 13 12 10 41 41 H 1.08997 * 109.46880 * 300.00700 * 14 13 12 42 42 H 1.08999 * 109.46410 * 60.00372 * 14 13 12 43 43 H 0.96700 * 113.99483 * 180.02562 * 15 14 13 44 44 H 1.08004 * 120.00196 * 179.74145 * 16 5 4 45 45 H 1.08004 * 119.91893 * 180.23858 * 17 16 5 46 46 H 0.97008 * 119.99772 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3694 -0.0005 5 6 1.9332 3.6148 0.0000 6 6 1.1379 4.8507 -0.0011 7 6 1.7559 6.0512 -0.0011 8 6 0.9645 7.2811 -0.0083 9 8 -0.2513 7.2225 -0.0147 10 7 1.5813 8.4794 -0.0078 11 6 3.0447 8.5500 -0.0006 12 6 0.7887 9.7114 -0.0155 13 6 0.5043 10.1440 1.4243 14 6 -0.3240 11.4303 1.4162 15 8 -0.5891 11.8346 2.7609 16 6 3.3319 3.6804 -0.0043 17 6 4.0752 2.5218 0.0015 18 6 3.4405 1.2846 0.0011 19 8 4.1776 0.1461 0.0021 20 6 5.5133 0.2821 -0.1140 21 1 5.9574 1.2665 -0.1201 22 6 6.3177 -0.8424 -0.2259 23 7 5.7768 -2.0412 -0.2181 24 14 8.1692 -0.6540 -0.3861 25 1 8.5235 0.7880 -0.3681 26 1 8.8369 -1.3424 0.7477 27 1 8.6192 -1.2580 -1.6660 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2156 2.3144 -0.0017 32 1 0.0592 4.7987 -0.0020 33 1 2.8347 6.1033 -0.0007 34 1 3.4128 8.5653 -1.0264 35 1 3.3621 9.4576 0.5129 36 1 3.4478 7.6797 0.5172 37 1 1.3434 10.4972 -0.5282 38 1 -0.1534 9.5340 -0.5343 39 1 -0.0503 9.3582 1.9369 40 1 1.4465 10.3214 1.9431 41 1 0.2304 12.2162 0.9034 42 1 -1.2660 11.2524 0.8975 43 1 -1.1117 12.6450 2.8322 44 1 3.8276 4.6399 -0.0081 45 1 5.1540 2.5738 0.0021 46 1 6.3395 -2.8276 -0.2960 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281992043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:14 Heat of formation + Delta-G solvation = -128.054491 kcal Electronic energy + Delta-G solvation = -27605.364725 eV Core-core repulsion = 23461.065380 eV Total energy + Delta-G solvation = -4144.299345 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.34698 -40.89224 -39.31875 -38.26263 -37.98561 -36.71094 -34.68457 -34.03379 -33.02192 -31.28505 -30.13511 -28.03860 -27.89788 -27.45589 -26.50192 -24.38938 -23.32306 -22.74592 -21.56877 -19.96767 -19.67809 -19.38388 -18.40692 -18.20072 -17.73858 -17.10570 -16.80779 -16.68772 -16.46304 -16.29113 -16.19597 -15.57415 -15.43213 -15.28351 -15.05794 -15.01514 -14.29046 -14.07818 -13.94810 -13.88001 -13.71088 -13.36692 -13.32700 -13.21874 -12.97548 -12.83290 -12.71810 -12.43938 -12.14735 -12.13777 -12.12185 -12.01513 -11.98915 -11.33859 -11.00555 -10.91715 -10.89232 -10.52306 -9.71665 -9.47316 -8.53848 -8.47252 -6.11605 -0.33263 0.53839 1.08635 1.37615 1.47237 1.56591 2.03511 2.17255 2.31655 2.54436 2.85799 3.13926 3.34471 3.37470 3.58764 3.89530 3.90365 4.11048 4.14758 4.18479 4.29582 4.33114 4.36052 4.40280 4.41119 4.44958 4.51990 4.58717 4.62113 4.64193 4.70191 4.78352 4.89617 4.98396 5.02102 5.08189 5.10862 5.16832 5.28432 5.41966 5.50183 5.61805 5.76048 5.91560 5.97578 6.37290 6.58576 6.88929 6.95387 7.17258 7.75484 8.74750 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015427 B = 0.002122 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.574504 B =13193.969057 C =14661.517231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.343 6.343 3 C 0.038 3.962 4 C -0.134 4.134 5 C -0.134 4.134 6 C 0.013 3.987 7 C -0.242 4.242 8 C 0.545 3.455 9 O -0.592 6.592 10 N -0.613 5.613 11 C 0.068 3.932 12 C 0.119 3.881 13 C -0.132 4.132 14 C 0.080 3.920 15 O -0.600 6.600 16 C -0.064 4.064 17 C -0.217 4.217 18 C 0.102 3.898 19 O -0.212 6.212 20 C -0.414 4.414 21 H 0.111 0.889 22 C -0.023 4.023 23 N -0.914 5.914 24 Si 1.022 2.978 25 H -0.244 1.244 26 H -0.270 1.270 27 H -0.271 1.271 28 H 0.110 0.890 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.154 0.846 32 H 0.125 0.875 33 H 0.154 0.846 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.069 0.931 39 H 0.037 0.963 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.399 0.601 44 H 0.157 0.843 45 H 0.139 0.861 46 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.772 26.035 -0.278 26.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.258 6.258 3 C -0.007 4.007 4 C -0.153 4.153 5 C -0.135 4.135 6 C -0.007 4.007 7 C -0.263 4.263 8 C 0.338 3.662 9 O -0.476 6.476 10 N -0.345 5.345 11 C -0.074 4.074 12 C -0.003 4.003 13 C -0.171 4.171 14 C 0.002 3.998 15 O -0.409 6.409 16 C -0.082 4.082 17 C -0.236 4.236 18 C 0.050 3.950 19 O -0.117 6.117 20 C -0.490 4.490 21 H 0.129 0.871 22 C -0.222 4.222 23 N -0.551 5.551 24 Si 0.841 3.159 25 H -0.167 1.167 26 H -0.195 1.195 27 H -0.196 1.196 28 H 0.128 0.872 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.171 0.829 32 H 0.142 0.858 33 H 0.171 0.829 34 H 0.092 0.908 35 H 0.111 0.889 36 H 0.100 0.900 37 H 0.131 0.869 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.068 0.932 43 H 0.249 0.751 44 H 0.175 0.825 45 H 0.156 0.844 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.945 24.860 -0.156 25.812 hybrid contribution 0.034 -0.123 -0.073 0.147 sum -6.911 24.737 -0.229 25.685 Atomic orbital electron populations 1.23274 0.77122 1.04989 1.02046 1.86190 1.22924 1.26836 1.89877 1.18376 0.89171 0.85770 1.07376 1.21247 1.00076 0.90082 1.03904 1.18524 0.93080 0.91920 1.09935 1.22148 0.99221 0.90529 0.88781 1.22910 1.01281 0.90978 1.11106 1.18616 0.87085 0.85041 0.75470 1.90761 1.15837 1.88040 1.52940 1.47790 1.08686 1.05182 1.72800 1.22152 0.76996 1.04747 1.03513 1.21382 0.97037 0.86079 0.95825 1.21820 1.00672 0.96915 0.97694 1.22095 0.98719 0.95807 0.83215 1.86435 1.77467 1.49107 1.27920 1.21279 0.92490 0.97928 0.96526 1.21037 1.01154 0.90722 1.10700 1.19580 0.89511 0.88178 0.97763 1.83981 1.20282 1.27815 1.79651 1.22040 0.78768 0.95955 1.52214 0.87146 1.26704 1.06231 0.93550 0.95685 1.70218 1.38474 0.98852 1.47591 0.84484 0.73080 0.80001 0.78360 1.16692 1.19543 1.19564 0.87196 0.91651 0.91670 0.82853 0.85764 0.82859 0.90789 0.88922 0.90039 0.86856 0.91248 0.94359 0.90846 0.90786 0.93152 0.75091 0.82513 0.84372 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.58 9.81 113.37 1.11 1.70 16 2 O -0.34 -15.25 10.28 -79.06 -0.81 -16.06 16 3 C 0.04 1.67 6.70 22.57 0.15 1.82 16 4 C -0.13 -4.65 8.77 22.65 0.20 -4.46 16 5 C -0.13 -4.24 5.87 -20.14 -0.12 -4.36 16 6 C 0.01 0.36 9.45 23.82 0.23 0.58 16 7 C -0.24 -5.74 8.60 23.61 0.20 -5.54 16 8 C 0.54 14.01 7.60 86.33 0.66 14.66 16 9 O -0.59 -19.72 15.81 -4.43 -0.07 -19.79 16 10 N -0.61 -11.11 2.87 -851.98 -2.45 -13.56 16 11 C 0.07 0.71 10.15 127.77 1.30 2.00 16 12 C 0.12 1.79 5.41 86.38 0.47 2.25 16 13 C -0.13 -2.19 5.91 30.59 0.18 -2.01 16 14 C 0.08 0.98 7.05 71.98 0.51 1.49 16 15 O -0.60 -9.13 13.66 -148.98 -2.03 -11.17 16 16 C -0.06 -2.06 9.40 22.57 0.21 -1.85 16 17 C -0.22 -8.87 9.14 22.33 0.20 -8.66 16 18 C 0.10 5.06 6.67 22.80 0.15 5.21 16 19 O -0.21 -12.76 9.52 -6.63 -0.06 -12.83 16 20 C -0.41 -23.49 9.48 67.93 0.64 -22.85 16 21 H 0.11 5.56 5.18 -2.91 -0.02 5.55 16 22 C -0.02 -1.30 5.49 84.85 0.47 -0.84 16 23 N -0.91 -55.93 13.67 21.62 0.30 -55.64 16 24 Si 1.02 41.51 29.55 68.60 2.03 43.54 16 25 H -0.24 -8.89 7.11 99.48 0.71 -8.18 16 26 H -0.27 -10.62 7.11 99.48 0.71 -9.91 16 27 H -0.27 -10.63 7.11 99.48 0.71 -9.93 16 28 H 0.11 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.06 1.64 7.66 -2.39 -0.02 1.62 16 30 H 0.06 1.64 7.66 -2.39 -0.02 1.62 16 31 H 0.15 4.30 6.28 -2.91 -0.02 4.28 16 32 H 0.12 3.44 7.52 -2.91 -0.02 3.41 16 33 H 0.15 2.80 4.21 -2.91 -0.01 2.79 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.09 0.59 8.07 -2.38 -0.02 0.57 16 36 H 0.08 0.83 6.10 -2.39 -0.01 0.82 16 37 H 0.11 0.89 8.07 -2.39 -0.02 0.87 16 38 H 0.07 1.29 7.42 -2.38 -0.02 1.27 16 39 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 42 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.40 2.07 9.12 -74.06 -0.68 1.40 16 44 H 0.16 3.64 6.15 -2.91 -0.02 3.62 16 45 H 0.14 5.51 5.61 -2.91 -0.02 5.50 16 46 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 Total: -1.00 -83.98 388.41 3.80 -80.17 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: 0.35 Total: 26.16 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 6.56 Total: -20.84 kcal Atomic # 7 Polarization: -67.05 SS G_CDS: -2.15 Total: -69.20 kcal Atomic # 8 Polarization: -56.86 SS G_CDS: -2.98 Total: -59.84 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -83.98 3.80 -80.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281992043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.881 kcal (2) G-P(sol) polarization free energy of solvation -83.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds