Wall clock time and date at job start Tue Mar 31 2020 18:21:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00043 * 2 1 4 4 C 1.53002 * 109.46834 * 269.99920 * 3 2 1 5 5 O 1.42902 * 109.47251 * 65.00169 * 4 3 2 6 6 C 1.42899 * 113.99946 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47035 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.47119 * 64.99907 * 7 6 5 9 9 C 1.34775 * 119.99892 * 179.97438 * 2 1 3 10 10 O 1.21726 * 120.00073 * 179.97438 * 9 2 1 11 11 C 1.46258 * 120.00322 * 0.02562 * 9 2 1 12 12 C 1.35015 * 120.00185 * 179.97438 * 11 9 2 13 13 C 1.46966 * 119.99859 * 179.72327 * 12 11 9 14 14 C 1.40020 * 120.10099 * 359.72646 * 13 12 11 15 15 C 1.37601 * 119.89632 * 179.78802 * 14 13 12 16 16 C 1.39173 * 120.10087 * 0.48795 * 15 14 13 17 17 O 1.35568 * 119.90002 * 179.76457 * 16 15 14 18 18 C 1.34779 * 117.00070 * 174.42258 * 17 16 15 19 19 H 1.07996 * 120.00296 * 5.05680 * 18 17 16 20 20 C 1.38728 * 119.99880 * 185.05920 * 18 17 16 21 21 N 1.31508 * 119.99925 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99891 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46999 * 90.00502 * 22 20 18 24 24 H 1.48502 * 109.46807 * 210.00364 * 22 20 18 25 25 H 1.48497 * 109.47364 * 330.00385 * 22 20 18 26 26 C 1.39182 * 120.20443 * 359.74007 * 16 15 14 27 27 C 1.37597 * 120.10073 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.47248 * 270.00184 * 1 2 3 29 29 H 1.09000 * 109.47003 * 30.00340 * 1 2 3 30 30 H 1.09001 * 109.47262 * 149.99877 * 1 2 3 31 31 H 1.09004 * 109.47425 * 29.99800 * 3 2 1 32 32 H 1.09001 * 109.47286 * 149.99906 * 3 2 1 33 33 H 1.09001 * 109.47036 * 184.99694 * 4 3 2 34 34 H 1.08993 * 109.47350 * 304.99859 * 4 3 2 35 35 H 1.09002 * 109.47498 * 299.99676 * 6 5 4 36 36 H 1.09003 * 109.47068 * 59.99807 * 6 5 4 37 37 H 1.08999 * 109.47251 * 185.00087 * 7 6 5 38 38 H 1.09002 * 109.46856 * 304.99838 * 7 6 5 39 39 H 0.96701 * 114.00155 * 180.02562 * 8 7 6 40 40 H 1.08007 * 119.99439 * 359.72456 * 11 9 2 41 41 H 1.07994 * 120.00134 * 359.72623 * 12 11 9 42 42 H 1.08001 * 120.05482 * 359.97438 * 14 13 12 43 43 H 1.08000 * 119.94685 * 180.22931 * 15 14 13 44 44 H 0.96995 * 120.00201 * 179.97438 * 21 20 18 45 45 H 1.07995 * 119.94818 * 179.97438 * 26 16 15 46 46 H 1.07996 * 120.05582 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 8 1.2060 1.9934 -2.0815 6 6 1.3325 2.4173 -3.4402 7 6 -0.0566 2.6904 -4.0207 8 8 -0.6513 3.7937 -3.3342 9 6 2.1389 -1.1672 0.0005 10 8 3.3561 -1.1672 0.0001 11 6 1.4076 -2.4339 0.0005 12 6 2.0827 -3.6031 0.0005 13 6 1.3479 -4.8759 0.0067 14 6 -0.0523 -4.8783 0.0183 15 6 -0.7361 -6.0724 0.0196 16 6 -0.0381 -7.2764 0.0196 17 8 -0.7159 -8.4505 0.0258 18 6 0.0127 -9.5783 -0.0913 19 1 1.0914 -9.5257 -0.1021 20 6 -0.6229 -10.8068 -0.1979 21 7 0.0881 -11.9073 -0.3116 22 14 -2.4885 -10.8979 -0.1786 23 1 -3.0037 -10.7903 -1.5671 24 1 -2.9147 -12.1935 0.4086 25 1 -3.0302 -9.7822 0.6382 26 6 1.3537 -7.2789 0.0129 27 6 2.0459 -6.0898 0.0067 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.0732 2.6063 -1.4439 34 1 2.9642 0.9130 -1.9815 35 1 1.9298 3.3282 -3.4827 36 1 1.8212 1.6350 -4.0210 37 1 0.0327 2.9275 -5.0808 38 1 -0.6820 1.8061 -3.8976 39 1 -1.5358 4.0232 -3.6505 40 1 0.3276 -2.4338 0.0046 41 1 3.1626 -3.6031 -0.0039 42 1 -0.5948 -3.9444 0.0232 43 1 -1.8161 -6.0752 0.0249 44 1 -0.3563 -12.7662 -0.3858 45 1 1.8912 -8.2156 0.0134 46 1 3.1259 -6.0926 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282183567.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:53 Heat of formation + Delta-G solvation = -109.373803 kcal Electronic energy + Delta-G solvation = -27328.777555 eV Core-core repulsion = 23185.288266 eV Total energy + Delta-G solvation = -4143.489289 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.94038 -39.31417 -38.46283 -37.09781 -36.78856 -35.42144 -33.30959 -32.48815 -31.14264 -30.52179 -29.31021 -28.22731 -26.53827 -25.64044 -24.01778 -22.85998 -22.39653 -22.05512 -20.20244 -18.70846 -18.09330 -17.94420 -17.51591 -17.36073 -16.77479 -16.54930 -15.85593 -15.31529 -15.01941 -14.97235 -14.64940 -14.57053 -14.09628 -13.95419 -13.94871 -13.54885 -13.30746 -12.99671 -12.84554 -12.74116 -12.58178 -12.40368 -12.32024 -12.19597 -11.92346 -11.85478 -11.60835 -11.27985 -11.18016 -11.02054 -10.74979 -10.49639 -10.27499 -9.98728 -9.69955 -9.63705 -9.54392 -8.93618 -8.71599 -8.46519 -7.23222 -6.60050 -4.23844 1.00076 2.03787 2.47662 2.99226 3.11818 3.15641 3.28970 3.30993 3.54670 3.81552 4.08982 4.43528 4.62699 4.63498 4.66663 4.74788 4.83301 4.94184 4.96396 5.01003 5.06603 5.11537 5.13563 5.20677 5.34332 5.39765 5.43438 5.45240 5.55324 5.58955 5.62718 5.74479 5.94597 6.03756 6.29591 6.31458 6.51567 6.56180 6.68344 6.84561 6.93730 7.09446 7.16878 7.19512 7.41127 7.42206 7.63183 7.84521 8.27982 8.73287 9.33700 10.46242 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018210 B = 0.001851 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.251932 B =15125.194315 C =16017.740631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.613 5.613 3 C 0.122 3.878 4 C 0.045 3.955 5 O -0.377 6.377 6 C 0.062 3.938 7 C 0.078 3.922 8 O -0.567 6.567 9 C 0.555 3.445 10 O -0.560 6.560 11 C -0.277 4.277 12 C 0.033 3.967 13 C -0.188 4.188 14 C -0.045 4.045 15 C -0.199 4.199 16 C 0.173 3.827 17 O -0.203 6.203 18 C -0.392 4.392 19 H 0.111 0.889 20 C 0.066 3.934 21 N -0.867 5.867 22 Si 0.907 3.093 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.258 1.258 26 C -0.229 4.229 27 C -0.037 4.037 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.379 0.621 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.283 0.717 45 H 0.137 0.863 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.973 26.913 -4.337 27.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.345 5.345 3 C -0.001 4.001 4 C -0.032 4.032 5 O -0.296 6.296 6 C -0.015 4.015 7 C 0.000 4.000 8 O -0.373 6.373 9 C 0.348 3.652 10 O -0.441 6.441 11 C -0.298 4.298 12 C 0.014 3.986 13 C -0.189 4.189 14 C -0.064 4.064 15 C -0.218 4.218 16 C 0.119 3.881 17 O -0.106 6.106 18 C -0.467 4.467 19 H 0.128 0.872 20 C -0.140 4.140 21 N -0.503 5.503 22 Si 0.732 3.268 23 H -0.197 1.197 24 H -0.205 1.205 25 H -0.182 1.182 26 C -0.249 4.249 27 C -0.056 4.056 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.225 0.775 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.093 0.907 45 H 0.155 0.845 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.212 26.537 -3.912 26.824 hybrid contribution -0.972 -0.252 -0.591 1.165 sum -1.184 26.285 -4.503 26.694 Atomic orbital electron populations 1.21830 0.79087 1.03727 1.01415 1.47588 1.07241 1.05368 1.74329 1.21431 0.98719 0.85388 0.94610 1.23001 0.86324 0.99300 0.94617 1.87922 1.29443 1.87551 1.24679 1.22512 0.96331 0.98718 0.83957 1.22191 0.93792 0.89515 0.94461 1.86550 1.35616 1.51436 1.63658 1.18460 0.87082 0.84295 0.75318 1.90761 1.13889 1.87791 1.51696 1.22580 1.00144 0.91449 1.15593 1.22313 0.99378 0.90926 0.86027 1.18533 0.93076 0.92107 1.15187 1.20875 0.92981 0.96606 0.95905 1.20143 0.99597 0.89950 1.12148 1.19361 0.90725 0.86211 0.91841 1.83503 1.36816 1.12348 1.77895 1.20874 0.92872 0.81365 1.51548 0.87208 1.24543 1.00659 0.93577 0.95182 1.69614 1.36873 0.98245 1.45562 0.86154 0.83070 0.78207 0.79378 1.19652 1.20531 1.18205 1.21222 0.93918 0.99033 1.10684 1.21043 0.98834 0.91269 0.94430 0.92997 0.90312 0.90871 0.89837 0.88406 0.92566 0.92769 0.92768 0.91984 0.92254 0.92617 0.77462 0.85598 0.85846 0.86311 0.86119 0.90671 0.84508 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.74 9.97 59.85 0.60 1.33 16 2 N -0.61 -7.00 2.84 -183.28 -0.52 -7.52 16 3 C 0.12 1.19 5.81 -4.04 -0.02 1.17 16 4 C 0.05 0.43 6.28 37.16 0.23 0.66 16 5 O -0.38 -3.81 9.13 -40.08 -0.37 -4.18 16 6 C 0.06 0.49 6.32 37.16 0.23 0.72 16 7 C 0.08 0.51 7.43 37.16 0.28 0.79 16 8 O -0.57 -4.34 13.62 -40.08 -0.55 -4.89 16 9 C 0.55 7.95 7.60 -13.04 -0.10 7.85 16 10 O -0.56 -9.66 15.81 5.17 0.08 -9.58 16 11 C -0.28 -3.79 8.60 -37.51 -0.32 -4.11 16 12 C 0.03 0.50 9.45 -37.19 -0.35 0.15 16 13 C -0.19 -3.10 5.87 -105.02 -0.62 -3.72 16 14 C -0.05 -0.73 9.40 -39.15 -0.37 -1.10 16 15 C -0.20 -3.69 9.97 -39.47 -0.39 -4.09 16 16 C 0.17 3.78 6.66 -38.88 -0.26 3.52 16 17 O -0.20 -5.06 8.57 0.75 0.01 -5.06 16 18 C -0.39 -10.50 9.94 30.91 0.31 -10.19 16 19 H 0.11 3.00 5.41 -52.49 -0.28 2.71 16 20 C 0.07 1.76 5.49 -17.51 -0.10 1.66 16 21 N -0.87 -23.94 13.96 55.48 0.77 -23.17 16 22 Si 0.91 20.59 28.62 -169.99 -4.86 15.73 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.26 -5.87 7.11 56.52 0.40 -5.47 16 26 C -0.23 -4.70 9.14 -39.47 -0.36 -5.06 16 27 C -0.04 -0.66 9.78 -39.14 -0.38 -1.04 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.68 7.11 -51.93 -0.37 0.31 16 30 H 0.07 0.63 6.10 -51.93 -0.32 0.31 16 31 H 0.08 0.68 8.07 -51.93 -0.42 0.27 16 32 H 0.10 1.01 7.42 -51.93 -0.39 0.62 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.38 1.13 9.12 45.56 0.42 1.55 16 40 H 0.13 1.48 4.22 -52.48 -0.22 1.26 16 41 H 0.12 1.85 7.52 -52.49 -0.39 1.46 16 42 H 0.12 1.54 6.16 -52.49 -0.32 1.21 16 43 H 0.12 2.04 8.06 -52.49 -0.42 1.62 16 44 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.14 2.92 5.62 -52.49 -0.29 2.63 16 46 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 389.77 15.07 5.87 5.87 Total: -1.00 -32.29 389.77 -6.72 -39.01 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.53 Total: 5.22 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -1.63 Total: -11.45 kcal Atomic # 7 Polarization: -30.94 SS G_CDS: 0.25 Total: -30.69 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -0.82 Total: -23.70 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.86 Total: 15.73 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.29 -6.72 -39.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282183567.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.363 kcal (2) G-P(sol) polarization free energy of solvation -32.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.655 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds