Wall clock time and date at job start Tue Mar 31 2020 18:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46495 * 120.00043 * 2 1 4 4 C 1.53002 * 109.46834 * 269.99920 * 3 2 1 5 5 O 1.42902 * 109.47251 * 65.00169 * 4 3 2 6 6 C 1.42899 * 113.99946 * 179.97438 * 5 4 3 7 7 C 1.53005 * 109.47035 * 179.97438 * 6 5 4 8 8 O 1.42901 * 109.47119 * 64.99907 * 7 6 5 9 9 C 1.34775 * 119.99892 * 179.97438 * 2 1 3 10 10 O 1.21726 * 120.00073 * 179.97438 * 9 2 1 11 11 C 1.46258 * 120.00322 * 0.02562 * 9 2 1 12 12 C 1.35015 * 120.00185 * 179.97438 * 11 9 2 13 13 C 1.46966 * 119.99859 * 179.72327 * 12 11 9 14 14 C 1.40020 * 120.10099 * 359.72646 * 13 12 11 15 15 C 1.37601 * 119.89632 * 179.78802 * 14 13 12 16 16 C 1.39173 * 120.10087 * 0.48795 * 15 14 13 17 17 O 1.35568 * 119.90002 * 179.76457 * 16 15 14 18 18 C 1.34779 * 117.00070 * 174.42258 * 17 16 15 19 19 H 1.07996 * 120.00296 * 5.05680 * 18 17 16 20 20 C 1.38728 * 119.99880 * 185.05920 * 18 17 16 21 21 N 1.31508 * 119.99925 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99891 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.46999 * 90.00502 * 22 20 18 24 24 H 1.48502 * 109.46807 * 210.00364 * 22 20 18 25 25 H 1.48497 * 109.47364 * 330.00385 * 22 20 18 26 26 C 1.39182 * 120.20443 * 359.74007 * 16 15 14 27 27 C 1.37597 * 120.10073 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.47248 * 270.00184 * 1 2 3 29 29 H 1.09000 * 109.47003 * 30.00340 * 1 2 3 30 30 H 1.09001 * 109.47262 * 149.99877 * 1 2 3 31 31 H 1.09004 * 109.47425 * 29.99800 * 3 2 1 32 32 H 1.09001 * 109.47286 * 149.99906 * 3 2 1 33 33 H 1.09001 * 109.47036 * 184.99694 * 4 3 2 34 34 H 1.08993 * 109.47350 * 304.99859 * 4 3 2 35 35 H 1.09002 * 109.47498 * 299.99676 * 6 5 4 36 36 H 1.09003 * 109.47068 * 59.99807 * 6 5 4 37 37 H 1.08999 * 109.47251 * 185.00087 * 7 6 5 38 38 H 1.09002 * 109.46856 * 304.99838 * 7 6 5 39 39 H 0.96701 * 114.00155 * 180.02562 * 8 7 6 40 40 H 1.08007 * 119.99439 * 359.72456 * 11 9 2 41 41 H 1.07994 * 120.00134 * 359.72623 * 12 11 9 42 42 H 1.08001 * 120.05482 * 359.97438 * 14 13 12 43 43 H 1.08000 * 119.94685 * 180.22931 * 15 14 13 44 44 H 0.96995 * 120.00201 * 179.97438 * 21 20 18 45 45 H 1.07995 * 119.94818 * 179.97438 * 26 16 15 46 46 H 1.07996 * 120.05582 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4425 5 8 1.2060 1.9934 -2.0815 6 6 1.3325 2.4173 -3.4402 7 6 -0.0566 2.6904 -4.0207 8 8 -0.6513 3.7937 -3.3342 9 6 2.1389 -1.1672 0.0005 10 8 3.3561 -1.1672 0.0001 11 6 1.4076 -2.4339 0.0005 12 6 2.0827 -3.6031 0.0005 13 6 1.3479 -4.8759 0.0067 14 6 -0.0523 -4.8783 0.0183 15 6 -0.7361 -6.0724 0.0196 16 6 -0.0381 -7.2764 0.0196 17 8 -0.7159 -8.4505 0.0258 18 6 0.0127 -9.5783 -0.0913 19 1 1.0914 -9.5257 -0.1021 20 6 -0.6229 -10.8068 -0.1979 21 7 0.0881 -11.9073 -0.3116 22 14 -2.4885 -10.8979 -0.1786 23 1 -3.0037 -10.7903 -1.5671 24 1 -2.9147 -12.1935 0.4086 25 1 -3.0302 -9.7822 0.6382 26 6 1.3537 -7.2789 0.0129 27 6 2.0459 -6.0898 0.0067 28 1 -0.3634 0.0000 1.0277 29 1 -0.3633 0.8900 -0.5139 30 1 -0.3634 -0.8900 -0.5139 31 1 1.6084 2.0284 0.5138 32 1 3.1499 1.1384 0.5138 33 1 3.0732 2.6063 -1.4439 34 1 2.9642 0.9130 -1.9815 35 1 1.9298 3.3282 -3.4827 36 1 1.8212 1.6350 -4.0210 37 1 0.0327 2.9275 -5.0808 38 1 -0.6820 1.8061 -3.8976 39 1 -1.5358 4.0232 -3.6505 40 1 0.3276 -2.4338 0.0046 41 1 3.1626 -3.6031 -0.0039 42 1 -0.5948 -3.9444 0.0232 43 1 -1.8161 -6.0752 0.0249 44 1 -0.3563 -12.7662 -0.3858 45 1 1.8912 -8.2156 0.0134 46 1 3.1259 -6.0926 0.0019 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282183567.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:52 Heat of formation + Delta-G solvation = -131.794399 kcal Electronic energy + Delta-G solvation = -27329.749785 eV Core-core repulsion = 23185.288266 eV Total energy + Delta-G solvation = -4144.461519 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.08915 -40.80808 -39.18388 -38.59914 -37.42277 -36.35910 -34.79564 -34.23040 -32.04441 -31.88411 -30.15446 -29.41518 -27.57686 -27.22322 -25.13613 -23.83934 -23.41712 -23.26655 -21.48578 -20.14797 -19.36359 -19.09127 -18.63042 -18.43910 -17.58945 -17.42834 -16.81273 -16.57374 -16.33333 -16.07777 -15.78879 -15.63844 -15.47960 -15.34813 -15.14507 -14.64613 -14.37583 -14.25251 -14.14037 -14.03028 -13.72281 -13.48177 -13.38451 -13.23720 -12.90874 -12.89985 -12.72771 -12.61201 -12.47638 -12.29327 -11.93653 -11.90378 -11.30735 -11.15652 -10.97665 -10.92776 -10.66767 -10.58646 -9.92039 -9.65276 -8.73931 -8.53458 -6.25234 -0.29168 0.54881 1.09550 1.32890 1.37632 1.52758 2.08605 2.26525 2.32586 2.68640 2.80433 3.00313 3.15063 3.40580 3.62583 3.90815 4.02110 4.04144 4.08588 4.20849 4.22582 4.26790 4.28380 4.36565 4.44817 4.49351 4.51565 4.55880 4.62732 4.72837 4.78446 4.83344 4.83450 4.86809 5.04427 5.12594 5.19414 5.28163 5.36940 5.53920 5.63534 5.70336 5.79558 5.83287 6.14170 6.16789 6.43165 6.79609 6.91752 7.19255 7.50762 8.57322 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.018210 B = 0.001851 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.251932 B =15125.194315 C =16017.740631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.606 5.606 3 C 0.118 3.882 4 C 0.050 3.950 5 O -0.390 6.390 6 C 0.052 3.948 7 C 0.079 3.921 8 O -0.591 6.591 9 C 0.545 3.455 10 O -0.595 6.595 11 C -0.242 4.242 12 C 0.012 3.988 13 C -0.160 4.160 14 C -0.039 4.039 15 C -0.193 4.193 16 C 0.137 3.863 17 O -0.233 6.233 18 C -0.404 4.404 19 H 0.084 0.916 20 C 0.012 3.988 21 N -0.917 5.917 22 Si 0.972 3.028 23 H -0.265 1.265 24 H -0.268 1.268 25 H -0.259 1.259 26 C -0.243 4.243 27 C -0.045 4.045 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.035 0.965 35 H 0.055 0.945 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.056 0.944 39 H 0.397 0.603 40 H 0.155 0.845 41 H 0.121 0.879 42 H 0.165 0.835 43 H 0.140 0.860 44 H 0.286 0.714 45 H 0.114 0.886 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.808 31.157 -4.529 31.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.336 5.336 3 C -0.005 4.005 4 C -0.028 4.028 5 O -0.310 6.310 6 C -0.024 4.024 7 C 0.001 3.999 8 O -0.399 6.399 9 C 0.338 3.662 10 O -0.478 6.478 11 C -0.262 4.262 12 C -0.008 4.008 13 C -0.161 4.161 14 C -0.057 4.057 15 C -0.212 4.212 16 C 0.086 3.914 17 O -0.139 6.139 18 C -0.480 4.480 19 H 0.101 0.899 20 C -0.188 4.188 21 N -0.557 5.557 22 Si 0.794 3.206 23 H -0.189 1.189 24 H -0.193 1.193 25 H -0.183 1.183 26 C -0.262 4.262 27 C -0.064 4.064 28 H 0.088 0.912 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.122 0.878 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.246 0.754 40 H 0.172 0.828 41 H 0.139 0.861 42 H 0.182 0.818 43 H 0.158 0.842 44 H 0.096 0.904 45 H 0.131 0.869 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.065 30.870 -4.111 31.211 hybrid contribution -0.214 -0.900 -0.549 1.076 sum -2.279 29.970 -4.660 30.416 Atomic orbital electron populations 1.22035 0.77207 1.04464 1.02772 1.47713 1.08482 1.05069 1.72385 1.21573 0.98726 0.85113 0.95104 1.22914 0.86435 0.99400 0.94034 1.87890 1.29573 1.87683 1.25814 1.22722 0.97590 0.98970 0.83120 1.22247 0.92866 0.89353 0.95430 1.86492 1.37190 1.51768 1.64468 1.18631 0.86756 0.85308 0.75505 1.90760 1.15436 1.88341 1.53287 1.22879 1.01419 0.90692 1.11215 1.22181 0.99421 0.90529 0.88662 1.18811 0.93612 0.92232 1.11426 1.21329 0.92785 0.97454 0.94143 1.20490 1.00746 0.89268 1.10659 1.19935 0.91548 0.86599 0.93317 1.83459 1.36588 1.12427 1.81411 1.20754 0.92116 0.82767 1.52318 0.89871 1.25344 1.05191 0.93115 0.95143 1.69702 1.38561 0.98808 1.48580 0.85198 0.77569 0.78337 0.79531 1.18936 1.19316 1.18331 1.21223 0.93977 0.99390 1.11629 1.21282 1.00110 0.90709 0.94257 0.91246 0.89785 0.90031 0.87781 0.89154 0.90950 0.94627 0.92648 0.91361 0.89989 0.92590 0.75362 0.82800 0.86063 0.81817 0.84223 0.90388 0.86855 0.84401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.02 9.97 127.77 1.27 2.29 16 2 N -0.61 -11.70 2.84 -851.98 -2.42 -14.12 16 3 C 0.12 1.99 5.81 86.38 0.50 2.49 16 4 C 0.05 0.84 6.28 71.98 0.45 1.29 16 5 O -0.39 -6.88 9.13 -144.34 -1.32 -8.20 16 6 C 0.05 0.71 6.32 71.98 0.45 1.17 16 7 C 0.08 0.82 7.43 71.98 0.53 1.35 16 8 O -0.59 -7.59 13.62 -144.34 -1.97 -9.55 16 9 C 0.54 13.88 7.60 86.33 0.66 14.53 16 10 O -0.59 -19.40 15.81 -4.43 -0.07 -19.47 16 11 C -0.24 -5.54 8.60 23.61 0.20 -5.33 16 12 C 0.01 0.32 9.45 23.82 0.23 0.54 16 13 C -0.16 -4.81 5.87 -20.12 -0.12 -4.93 16 14 C -0.04 -1.11 9.40 22.55 0.21 -0.90 16 15 C -0.19 -6.73 9.97 22.34 0.22 -6.50 16 16 C 0.14 6.07 6.66 22.72 0.15 6.22 16 17 O -0.23 -12.08 8.57 -20.22 -0.17 -12.25 16 18 C -0.40 -23.03 9.94 67.94 0.68 -22.36 16 19 H 0.08 4.99 5.41 -2.91 -0.02 4.97 16 20 C 0.01 0.65 5.49 84.86 0.47 1.12 16 21 N -0.92 -53.47 13.96 21.63 0.30 -53.17 16 22 Si 0.97 43.71 28.62 68.60 1.96 45.68 16 23 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 25 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 26 C -0.24 -10.33 9.14 22.34 0.20 -10.13 16 27 C -0.05 -1.56 9.78 22.55 0.22 -1.34 16 28 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.08 1.09 7.11 -2.39 -0.02 1.08 16 30 H 0.08 0.95 6.10 -2.39 -0.01 0.93 16 31 H 0.10 1.35 8.07 -2.38 -0.02 1.33 16 32 H 0.09 1.69 7.42 -2.39 -0.02 1.67 16 33 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.40 1.42 9.12 -74.06 -0.68 0.74 16 40 H 0.15 2.63 4.22 -2.91 -0.01 2.61 16 41 H 0.12 3.36 7.52 -2.91 -0.02 3.34 16 42 H 0.16 3.14 6.16 -2.91 -0.02 3.12 16 43 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 44 H 0.29 15.28 8.31 -92.71 -0.77 14.51 16 45 H 0.11 5.30 5.62 -2.91 -0.02 5.29 16 46 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 Total: -1.00 -73.91 389.77 3.00 -70.91 By element: Atomic # 1 Polarization: 20.31 SS G_CDS: 0.34 Total: 20.65 kcal Atomic # 6 Polarization: -26.81 SS G_CDS: 6.34 Total: -20.48 kcal Atomic # 7 Polarization: -65.17 SS G_CDS: -2.11 Total: -67.29 kcal Atomic # 8 Polarization: -45.94 SS G_CDS: -3.53 Total: -49.47 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 1.96 Total: 45.68 kcal Total: -73.91 3.00 -70.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282183567.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.882 kcal (2) G-P(sol) polarization free energy of solvation -73.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds