Wall clock time and date at job start Tue Mar 31 2020 18:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35996 * 117.00209 * 2 1 4 4 C 1.38565 * 120.07335 * 0.02562 * 3 2 1 5 5 C 1.38237 * 120.00029 * 179.97438 * 4 3 2 6 6 C 1.38249 * 120.14948 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.93163 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47165 * 89.99354 * 7 6 5 9 9 C 1.46900 * 111.00087 * 174.96618 * 8 7 6 10 10 C 1.50700 * 115.55163 * 294.53721 * 9 8 7 11 11 O 1.20833 * 119.99565 * 144.61174 * 10 9 8 12 12 O 1.34222 * 120.00078 * 324.61802 * 10 9 8 13 13 C 1.53001 * 117.49932 * 148.87122 * 9 8 7 14 14 C 1.53005 * 117.49958 * 80.21054 * 9 8 7 15 15 C 1.38247 * 120.14535 * 359.76428 * 6 5 4 16 16 C 1.38565 * 119.99472 * 0.50958 * 15 6 5 17 17 O 1.35997 * 120.07078 * 179.74429 * 16 15 6 18 18 C 1.42894 * 117.00171 * 359.72526 * 17 16 15 19 19 C 1.53000 * 109.47293 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47128 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99935 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99811 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00295 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99640 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47237 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47020 * 120.00423 * 24 22 20 27 27 H 1.48501 * 109.46928 * 239.99985 * 24 22 20 28 28 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47536 * 300.00893 * 1 2 3 30 30 H 1.09004 * 109.46851 * 60.00205 * 1 2 3 31 31 H 1.08007 * 119.99948 * 359.95602 * 4 3 2 32 32 H 1.08007 * 119.92780 * 180.02562 * 5 4 3 33 33 H 1.08992 * 109.47525 * 209.99554 * 7 6 5 34 34 H 1.09004 * 109.46883 * 330.00129 * 7 6 5 35 35 H 1.00901 * 111.00572 * 298.92078 * 8 7 6 36 36 H 0.96698 * 117.00197 * 179.97438 * 12 10 9 37 37 H 1.09003 * 117.49956 * 359.97438 * 13 9 8 38 38 H 1.08997 * 117.50509 * 145.02435 * 13 9 8 39 39 H 1.08994 * 117.50199 * 214.98060 * 14 9 8 40 40 H 1.09004 * 117.49326 * 359.97438 * 14 9 8 41 41 H 1.07998 * 120.00122 * 180.28321 * 15 6 5 42 42 H 1.09007 * 109.47124 * 60.00080 * 18 17 16 43 43 H 1.09000 * 109.47516 * 300.00291 * 18 17 16 44 44 H 1.09001 * 109.47211 * 300.00002 * 19 18 17 45 45 H 1.08994 * 109.47226 * 60.00252 * 19 18 17 46 46 H 0.97003 * 120.00015 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6057 0.0011 6 6 3.3030 3.6798 0.0016 7 6 3.9838 5.0242 0.0028 8 7 4.2044 5.4602 1.3881 9 6 4.9729 6.7114 1.4302 10 6 6.3884 6.6223 0.9210 11 8 6.8752 7.5530 0.3235 12 8 7.1083 5.5091 1.1309 13 6 4.6988 7.6702 2.5907 14 6 4.2132 8.0159 1.1807 15 6 4.0604 2.5233 0.0065 16 6 3.4360 1.2863 0.0003 17 8 4.1796 0.1476 -0.0002 18 6 5.6003 0.3006 0.0000 19 6 6.2618 -1.0791 -0.0012 20 6 7.7601 -0.9177 -0.0005 21 1 8.1969 0.0700 0.0012 22 6 8.5733 -2.0312 -0.0008 23 7 8.0415 -3.2340 -0.0022 24 14 10.4307 -1.8311 0.0009 25 1 10.7729 -0.3862 0.0018 26 1 10.9968 -2.4753 1.2132 27 1 10.9987 -2.4731 -1.2117 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2146 2.3197 0.0002 32 1 1.3343 4.5115 0.0019 33 1 4.9421 4.9467 -0.5107 34 1 3.3541 5.7508 -0.5108 35 1 3.3291 5.5568 1.8806 36 1 8.0114 5.4986 0.7852 37 1 3.9479 7.3727 3.3227 38 1 5.5421 8.2368 2.9855 39 1 4.7372 8.8097 0.6485 40 1 3.1432 7.9455 0.9849 41 1 5.1386 2.5839 0.0116 42 1 5.9065 0.8500 0.8902 43 1 5.9066 0.8507 -0.8898 44 1 5.9555 -1.6296 0.8883 45 1 5.9556 -1.6281 -0.8916 46 1 8.6136 -4.0173 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284169658.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:38 Heat of formation + Delta-G solvation = -113.274485 kcal Electronic energy + Delta-G solvation = -28498.257187 eV Core-core repulsion = 24354.598752 eV Total energy + Delta-G solvation = -4143.658435 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.85256 -40.29890 -38.29878 -38.06804 -36.98011 -36.20747 -33.70806 -33.24642 -30.65024 -30.16730 -29.22354 -27.40998 -25.61385 -25.08418 -24.66687 -23.00777 -22.41629 -21.17217 -20.48125 -20.36066 -18.30647 -18.25695 -17.20867 -17.03864 -16.62066 -16.17713 -15.84813 -15.81766 -15.34032 -15.03988 -14.93788 -14.57456 -14.48557 -14.30233 -14.13779 -13.81191 -13.47960 -13.09691 -12.63668 -12.33203 -12.28524 -12.09371 -12.06490 -11.71489 -11.65335 -11.48510 -11.44925 -11.17769 -11.06060 -10.93909 -10.85076 -10.73902 -10.67310 -10.50248 -9.78871 -9.60444 -9.22583 -8.79449 -8.52419 -8.40204 -7.50476 -6.05438 -4.09617 1.38771 1.55503 1.79399 2.65545 3.15180 3.29620 3.36487 3.40100 3.41597 3.63956 3.83889 3.98367 4.12576 4.34156 4.44492 4.69376 4.74194 4.78433 5.00301 5.09807 5.13218 5.15803 5.16896 5.20418 5.30992 5.34750 5.42518 5.48587 5.55392 5.57707 5.58001 5.83792 6.09443 6.12277 6.24226 6.29563 6.31477 6.46855 6.59832 6.75348 6.84939 6.92081 7.34019 7.60716 7.71796 7.72405 7.88382 8.14636 8.29973 8.96364 9.54296 11.06237 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.007147 B = 0.003638 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3916.914137 B = 7695.464770 C =11340.866260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.302 6.302 3 C 0.092 3.908 4 C -0.176 4.176 5 C -0.124 4.124 6 C -0.083 4.083 7 C 0.106 3.894 8 N -0.630 5.630 9 C 0.040 3.960 10 C 0.527 3.473 11 O -0.518 6.518 12 O -0.490 6.490 13 C -0.141 4.141 14 C -0.182 4.182 15 C -0.151 4.151 16 C 0.119 3.881 17 O -0.304 6.304 18 C 0.064 3.936 19 C 0.026 3.974 20 C -0.523 4.523 21 H 0.059 0.941 22 C 0.060 3.940 23 N -0.890 5.890 24 Si 0.898 3.102 25 H -0.272 1.272 26 H -0.283 1.283 27 H -0.283 1.283 28 H 0.097 0.903 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.130 0.870 32 H 0.118 0.882 33 H 0.079 0.921 34 H 0.044 0.956 35 H 0.354 0.646 36 H 0.412 0.588 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.139 0.861 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.028 0.972 45 H 0.027 0.973 46 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.516 20.781 2.652 25.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.216 6.216 3 C 0.047 3.953 4 C -0.195 4.195 5 C -0.143 4.143 6 C -0.084 4.084 7 C -0.022 4.022 8 N -0.262 5.262 9 C -0.054 4.054 10 C 0.369 3.631 11 O -0.407 6.407 12 O -0.300 6.300 13 C -0.179 4.179 14 C -0.222 4.222 15 C -0.171 4.171 16 C 0.072 3.928 17 O -0.218 6.218 18 C -0.010 4.010 19 C -0.011 4.011 20 C -0.562 4.562 21 H 0.077 0.923 22 C -0.142 4.142 23 N -0.528 5.528 24 Si 0.725 3.275 25 H -0.196 1.196 26 H -0.209 1.209 27 H -0.209 1.209 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.148 0.852 32 H 0.136 0.864 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.174 0.826 36 H 0.271 0.729 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.157 0.843 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.133 20.008 2.729 24.648 hybrid contribution 0.836 0.868 -0.475 1.295 sum -13.297 20.876 2.254 24.854 Atomic orbital electron populations 1.23014 0.79248 1.03750 1.00719 1.86252 1.20400 1.25974 1.88932 1.18362 0.89474 0.85063 1.02434 1.20887 0.99448 0.91492 1.07639 1.20529 0.93513 0.96720 1.03546 1.19213 0.92900 0.93697 1.02603 1.20809 1.00066 0.92798 0.88530 1.60124 1.24511 1.26300 1.15262 1.20875 0.90034 0.87827 1.06690 1.21775 0.86813 0.79441 0.75108 1.90737 1.71816 1.39149 1.38959 1.84635 1.31015 1.40142 1.74189 1.23288 1.04045 0.98944 0.91589 1.23737 1.00865 0.98284 0.99282 1.21035 1.00889 0.90268 1.04892 1.18456 0.88485 0.87162 0.98715 1.86280 1.21043 1.27225 1.87209 1.23339 0.74832 1.03185 0.99601 1.19111 0.94160 0.88966 0.98879 1.21019 0.90353 0.92928 1.51874 0.92294 1.24989 0.99067 0.95146 0.95016 1.69994 1.35268 0.97582 1.49946 0.86450 0.85105 0.78270 0.77668 1.19636 1.20866 1.20908 0.88411 0.93047 0.93066 0.85249 0.86404 0.90239 0.93784 0.82568 0.72927 0.86803 0.87368 0.86966 0.87387 0.84288 0.92981 0.93311 0.95383 0.95439 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 9.81 101.05 0.99 1.28 16 2 O -0.30 -4.93 10.28 -34.23 -0.35 -5.28 16 3 C 0.09 1.49 6.70 -39.12 -0.26 1.23 16 4 C -0.18 -2.17 9.04 -39.46 -0.36 -2.53 16 5 C -0.12 -1.40 9.69 -39.58 -0.38 -1.78 16 6 C -0.08 -1.06 5.44 -104.62 -0.57 -1.63 16 7 C 0.11 1.12 5.71 -4.98 -0.03 1.09 16 8 N -0.63 -6.21 6.57 -102.40 -0.67 -6.88 16 9 C 0.04 0.37 2.31 -132.75 -0.31 0.06 16 10 C 0.53 6.04 7.08 36.01 0.25 6.29 16 11 O -0.52 -6.96 17.02 -18.76 -0.32 -7.28 16 12 O -0.49 -5.39 13.36 -39.24 -0.52 -5.92 16 13 C -0.14 -0.96 9.99 -26.69 -0.27 -1.22 16 14 C -0.18 -1.28 9.93 -26.69 -0.27 -1.55 16 15 C -0.15 -2.40 8.69 -39.46 -0.34 -2.75 16 16 C 0.12 2.18 6.70 -39.12 -0.26 1.92 16 17 O -0.30 -6.66 9.92 -34.23 -0.34 -7.00 16 18 C 0.06 1.43 4.68 37.16 0.17 1.60 16 19 C 0.03 0.70 5.34 -27.88 -0.15 0.55 16 20 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 21 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 23 N -0.89 -26.83 13.29 55.43 0.74 -26.09 16 24 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 25 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 31 H 0.13 1.22 6.30 -52.48 -0.33 0.89 16 32 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.08 0.94 7.38 -51.93 -0.38 0.56 16 34 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.35 2.83 8.65 -39.29 -0.34 2.49 16 36 H 0.41 2.90 9.10 45.56 0.41 3.31 16 37 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.11 0.88 7.67 -51.93 -0.40 0.49 16 40 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.14 2.26 6.30 -52.49 -0.33 1.92 16 42 H 0.05 1.11 7.65 -51.93 -0.40 0.71 16 43 H 0.05 1.02 7.68 -51.93 -0.40 0.62 16 44 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 394.08 15.07 5.94 5.94 Total: -1.00 -35.23 394.08 -8.62 -43.84 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -5.88 Total: 3.12 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.18 Total: -10.90 kcal Atomic # 7 Polarization: -33.03 SS G_CDS: 0.06 Total: -32.97 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -1.53 Total: -25.47 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -35.23 -8.62 -43.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284169658.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.430 kcal (2) G-P(sol) polarization free energy of solvation -35.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds