Wall clock time and date at job start Tue Mar 31 2020 18:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35996 * 117.00209 * 2 1 4 4 C 1.38565 * 120.07335 * 0.02562 * 3 2 1 5 5 C 1.38237 * 120.00029 * 179.97438 * 4 3 2 6 6 C 1.38249 * 120.14948 * 359.97438 * 5 4 3 7 7 C 1.50696 * 119.93163 * 180.02562 * 6 5 4 8 8 N 1.46898 * 109.47165 * 89.99354 * 7 6 5 9 9 C 1.46900 * 111.00087 * 174.96618 * 8 7 6 10 10 C 1.50700 * 115.55163 * 294.53721 * 9 8 7 11 11 O 1.20833 * 119.99565 * 144.61174 * 10 9 8 12 12 O 1.34222 * 120.00078 * 324.61802 * 10 9 8 13 13 C 1.53001 * 117.49932 * 148.87122 * 9 8 7 14 14 C 1.53005 * 117.49958 * 80.21054 * 9 8 7 15 15 C 1.38247 * 120.14535 * 359.76428 * 6 5 4 16 16 C 1.38565 * 119.99472 * 0.50958 * 15 6 5 17 17 O 1.35997 * 120.07078 * 179.74429 * 16 15 6 18 18 C 1.42894 * 117.00171 * 359.72526 * 17 16 15 19 19 C 1.53000 * 109.47293 * 180.02562 * 18 17 16 20 20 C 1.50701 * 109.47128 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99935 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99811 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00295 * 0.02562 * 22 20 19 24 24 Si 1.86809 * 119.99640 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47237 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47020 * 120.00423 * 24 22 20 27 27 H 1.48501 * 109.46928 * 239.99985 * 24 22 20 28 28 H 1.08997 * 109.47233 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47536 * 300.00893 * 1 2 3 30 30 H 1.09004 * 109.46851 * 60.00205 * 1 2 3 31 31 H 1.08007 * 119.99948 * 359.95602 * 4 3 2 32 32 H 1.08007 * 119.92780 * 180.02562 * 5 4 3 33 33 H 1.08992 * 109.47525 * 209.99554 * 7 6 5 34 34 H 1.09004 * 109.46883 * 330.00129 * 7 6 5 35 35 H 1.00901 * 111.00572 * 298.92078 * 8 7 6 36 36 H 0.96698 * 117.00197 * 179.97438 * 12 10 9 37 37 H 1.09003 * 117.49956 * 359.97438 * 13 9 8 38 38 H 1.08997 * 117.50509 * 145.02435 * 13 9 8 39 39 H 1.08994 * 117.50199 * 214.98060 * 14 9 8 40 40 H 1.09004 * 117.49326 * 359.97438 * 14 9 8 41 41 H 1.07998 * 120.00122 * 180.28321 * 15 6 5 42 42 H 1.09007 * 109.47124 * 60.00080 * 18 17 16 43 43 H 1.09000 * 109.47516 * 300.00291 * 18 17 16 44 44 H 1.09001 * 109.47211 * 300.00002 * 19 18 17 45 45 H 1.08994 * 109.47226 * 60.00252 * 19 18 17 46 46 H 0.97003 * 120.00015 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2933 2.3748 0.0005 5 6 1.9225 3.6057 0.0011 6 6 3.3030 3.6798 0.0016 7 6 3.9838 5.0242 0.0028 8 7 4.2044 5.4602 1.3881 9 6 4.9729 6.7114 1.4302 10 6 6.3884 6.6223 0.9210 11 8 6.8752 7.5530 0.3235 12 8 7.1083 5.5091 1.1309 13 6 4.6988 7.6702 2.5907 14 6 4.2132 8.0159 1.1807 15 6 4.0604 2.5233 0.0065 16 6 3.4360 1.2863 0.0003 17 8 4.1796 0.1476 -0.0002 18 6 5.6003 0.3006 0.0000 19 6 6.2618 -1.0791 -0.0012 20 6 7.7601 -0.9177 -0.0005 21 1 8.1969 0.0700 0.0012 22 6 8.5733 -2.0312 -0.0008 23 7 8.0415 -3.2340 -0.0022 24 14 10.4307 -1.8311 0.0009 25 1 10.7729 -0.3862 0.0018 26 1 10.9968 -2.4753 1.2132 27 1 10.9987 -2.4731 -1.2117 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2146 2.3197 0.0002 32 1 1.3343 4.5115 0.0019 33 1 4.9421 4.9467 -0.5107 34 1 3.3541 5.7508 -0.5108 35 1 3.3291 5.5568 1.8806 36 1 8.0114 5.4986 0.7852 37 1 3.9479 7.3727 3.3227 38 1 5.5421 8.2368 2.9855 39 1 4.7372 8.8097 0.6485 40 1 3.1432 7.9455 0.9849 41 1 5.1386 2.5839 0.0116 42 1 5.9065 0.8500 0.8902 43 1 5.9066 0.8507 -0.8898 44 1 5.9555 -1.6296 0.8883 45 1 5.9556 -1.6281 -0.8916 46 1 8.6136 -4.0173 -0.0020 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284169658.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:37 Heat of formation + Delta-G solvation = -138.429944 kcal Electronic energy + Delta-G solvation = -28499.348010 eV Core-core repulsion = 24354.598752 eV Total energy + Delta-G solvation = -4144.749258 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.69749 -41.42928 -39.45286 -39.05082 -38.01774 -37.10998 -35.49200 -34.42491 -32.45269 -31.19433 -30.56111 -28.28500 -27.06100 -26.33871 -25.60655 -23.95418 -23.53368 -22.46391 -21.93069 -21.12594 -19.49286 -19.16154 -18.62165 -17.96760 -17.80497 -17.59353 -17.12307 -16.99711 -16.52597 -16.32101 -16.19615 -15.70393 -15.59034 -15.15340 -15.05335 -14.89933 -14.45145 -14.32262 -14.14057 -13.87067 -13.63549 -13.07833 -13.01134 -12.88839 -12.67779 -12.65743 -12.55145 -12.50454 -12.32269 -12.15562 -11.94809 -11.89224 -11.84003 -11.59671 -11.57709 -11.40392 -11.35925 -10.62536 -9.64574 -9.44729 -8.70996 -8.26020 -6.39903 0.31591 0.45759 0.97721 1.40557 1.42100 1.55610 1.97513 2.28401 2.43486 2.46954 2.53050 2.79250 3.08113 3.15488 3.50567 3.76591 3.79643 3.89605 4.08008 4.11174 4.17256 4.25184 4.27450 4.40708 4.43620 4.45026 4.51129 4.59507 4.63767 4.66509 4.74858 4.76283 4.83525 4.87101 5.09245 5.21836 5.29333 5.32900 5.46896 5.48298 5.58664 5.68252 5.73432 5.84031 6.06590 6.26828 6.31995 6.72995 6.75951 6.94747 7.30095 8.87622 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.007147 B = 0.003638 C = 0.002468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3916.914137 B = 7695.464770 C =11340.866260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.343 6.343 3 C 0.077 3.923 4 C -0.165 4.165 5 C -0.101 4.101 6 C -0.082 4.082 7 C 0.112 3.888 8 N -0.639 5.639 9 C 0.016 3.984 10 C 0.523 3.477 11 O -0.546 6.546 12 O -0.502 6.502 13 C -0.128 4.128 14 C -0.166 4.166 15 C -0.159 4.159 16 C 0.067 3.933 17 O -0.337 6.337 18 C 0.088 3.912 19 C 0.031 3.969 20 C -0.544 4.544 21 H 0.071 0.929 22 C 0.001 3.999 23 N -0.932 5.932 24 Si 0.977 3.023 25 H -0.257 1.257 26 H -0.276 1.276 27 H -0.276 1.276 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.167 0.833 32 H 0.166 0.834 33 H 0.059 0.941 34 H 0.071 0.929 35 H 0.367 0.633 36 H 0.423 0.577 37 H 0.136 0.864 38 H 0.107 0.893 39 H 0.101 0.899 40 H 0.133 0.867 41 H 0.124 0.876 42 H 0.056 0.944 43 H 0.056 0.944 44 H -0.004 1.004 45 H -0.004 1.004 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.201 23.943 3.114 29.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.258 6.258 3 C 0.031 3.969 4 C -0.183 4.183 5 C -0.120 4.120 6 C -0.082 4.082 7 C -0.016 4.016 8 N -0.273 5.273 9 C -0.077 4.077 10 C 0.366 3.634 11 O -0.437 6.437 12 O -0.314 6.314 13 C -0.165 4.165 14 C -0.206 4.206 15 C -0.178 4.178 16 C 0.021 3.979 17 O -0.252 6.252 18 C 0.013 3.987 19 C -0.006 4.006 20 C -0.582 4.582 21 H 0.089 0.911 22 C -0.197 4.197 23 N -0.571 5.571 24 Si 0.800 3.200 25 H -0.180 1.180 26 H -0.201 1.201 27 H -0.202 1.202 28 H 0.126 0.874 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.184 0.816 32 H 0.183 0.817 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.189 0.811 36 H 0.284 0.716 37 H 0.154 0.846 38 H 0.125 0.875 39 H 0.119 0.881 40 H 0.151 0.849 41 H 0.141 0.859 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.014 0.986 45 H 0.014 0.986 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.847 23.191 3.199 28.270 hybrid contribution 1.197 -0.058 -0.610 1.345 sum -14.649 23.133 2.590 27.504 Atomic orbital electron populations 1.23350 0.76403 1.05249 1.02578 1.86193 1.23548 1.26854 1.89180 1.18676 0.88917 0.86397 1.02893 1.21325 1.01040 0.90326 1.05621 1.21056 0.92952 0.98040 0.99928 1.19470 0.93759 0.93444 1.01566 1.20720 0.99399 0.92142 0.89356 1.59973 1.25345 1.27122 1.14827 1.20934 0.88871 0.88520 1.09405 1.22331 0.87730 0.78864 0.74440 1.90713 1.72704 1.39960 1.40332 1.84629 1.32131 1.40358 1.74268 1.23448 1.04327 0.97055 0.91695 1.23803 1.01737 0.95970 0.99086 1.21042 1.00500 0.90831 1.05450 1.18911 0.89499 0.86688 1.02783 1.86168 1.20265 1.29922 1.88845 1.22799 0.75951 0.99870 1.00051 1.18936 0.94826 0.91115 0.95750 1.21416 0.91014 0.93713 1.52015 0.91126 1.26063 1.04984 0.94563 0.94118 1.70140 1.37593 0.98667 1.50717 0.85221 0.77785 0.79038 0.77914 1.18045 1.20134 1.20178 0.87399 0.91021 0.91083 0.81583 0.81702 0.92252 0.91054 0.81081 0.71559 0.84578 0.87510 0.88053 0.84857 0.85851 0.92570 0.92628 0.98595 0.98582 0.92440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.81 113.37 1.11 1.46 16 2 O -0.34 -11.33 10.28 -79.65 -0.82 -12.15 16 3 C 0.08 2.45 6.70 22.57 0.15 2.60 16 4 C -0.16 -3.51 9.04 22.35 0.20 -3.31 16 5 C -0.10 -1.84 9.69 22.27 0.22 -1.62 16 6 C -0.08 -1.90 5.44 -19.86 -0.11 -2.00 16 7 C 0.11 2.10 5.71 85.56 0.49 2.59 16 8 N -0.64 -10.95 6.57 -477.88 -3.14 -14.09 16 9 C 0.02 0.27 2.31 2.78 0.01 0.27 16 10 C 0.52 11.74 7.08 71.24 0.50 12.24 16 11 O -0.55 -14.62 17.02 21.94 0.37 -14.25 16 12 O -0.50 -11.16 13.36 -51.34 -0.69 -11.85 16 13 C -0.13 -1.36 9.99 30.62 0.31 -1.05 16 14 C -0.17 -1.82 9.93 30.62 0.30 -1.51 16 15 C -0.16 -5.13 8.69 22.35 0.19 -4.94 16 16 C 0.07 2.54 6.70 22.57 0.15 2.69 16 17 O -0.34 -15.88 9.92 -79.65 -0.79 -16.67 16 18 C 0.09 4.17 4.68 71.98 0.34 4.51 16 19 C 0.03 1.79 5.34 29.85 0.16 1.95 16 20 C -0.54 -31.85 9.11 25.60 0.23 -31.62 16 21 H 0.07 3.87 7.74 -2.91 -0.02 3.85 16 22 C 0.00 0.06 5.46 84.65 0.46 0.52 16 23 N -0.93 -58.25 13.29 21.45 0.28 -57.97 16 24 Si 0.98 44.55 29.54 68.60 2.03 46.57 16 25 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 27 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 28 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.04 7.66 -2.39 -0.02 1.02 16 30 H 0.07 1.03 7.66 -2.38 -0.02 1.01 16 31 H 0.17 2.27 6.30 -2.91 -0.02 2.26 16 32 H 0.17 1.53 8.06 -2.91 -0.02 1.51 16 33 H 0.06 1.36 7.38 -2.39 -0.02 1.35 16 34 H 0.07 0.96 8.08 -2.38 -0.02 0.94 16 35 H 0.37 4.43 8.65 -89.69 -0.78 3.65 16 36 H 0.42 6.22 9.10 -74.06 -0.67 5.55 16 37 H 0.14 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.10 1.38 7.67 -2.39 -0.02 1.36 16 40 H 0.13 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.12 4.24 6.30 -2.91 -0.02 4.22 16 42 H 0.06 2.55 7.65 -2.38 -0.02 2.53 16 43 H 0.06 2.49 7.68 -2.39 -0.02 2.47 16 44 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 45 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 46 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -82.19 394.08 1.54 -80.64 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -0.43 Total: 16.98 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 4.72 Total: -17.23 kcal Atomic # 7 Polarization: -69.20 SS G_CDS: -2.85 Total: -72.05 kcal Atomic # 8 Polarization: -53.00 SS G_CDS: -1.92 Total: -54.92 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.57 kcal Total: -82.19 1.54 -80.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284169658.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.786 kcal (2) G-P(sol) polarization free energy of solvation -82.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds