Wall clock time and date at job start Tue Mar 31 2020 19:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 113.99808 * 2 1 4 4 C 1.53004 * 109.46895 * 179.97438 * 3 2 1 5 5 C 1.50691 * 109.54601 * 300.00432 * 4 3 2 6 6 O 1.21294 * 119.99978 * 240.00088 * 5 4 3 7 7 N 1.34777 * 120.00394 * 59.99468 * 5 4 3 8 8 C 1.39925 * 120.00123 * 175.61258 * 7 5 4 9 9 C 1.38960 * 120.03794 * 35.11219 * 8 7 5 10 10 C 1.38151 * 120.06780 * 179.97438 * 9 8 7 11 11 C 1.38167 * 120.14021 * 359.97438 * 10 9 8 12 12 C 1.38910 * 120.06871 * 0.02562 * 11 10 9 13 13 O 1.35758 * 120.03319 * 180.02562 * 12 11 10 14 14 C 1.34826 * 116.99949 * 185.33799 * 13 12 11 15 15 H 1.07996 * 119.99965 * 354.98358 * 14 13 12 16 16 C 1.38649 * 119.99843 * 174.98014 * 14 13 12 17 17 N 1.31562 * 120.00091 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00120 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46939 * 90.00459 * 18 16 14 20 20 H 1.48506 * 109.47342 * 209.99857 * 18 16 14 21 21 H 1.48494 * 109.47198 * 330.00359 * 18 16 14 22 22 C 1.38716 * 120.03389 * 214.83912 * 8 7 5 23 23 C 1.53181 * 109.54065 * 60.18215 * 4 3 2 24 24 C 1.53283 * 109.06194 * 176.85358 * 23 4 3 25 25 O 1.42906 * 109.45770 * 302.43853 * 24 23 4 26 26 C 1.42905 * 114.09548 * 61.16304 * 25 24 23 27 27 C 1.53086 * 109.41382 * 298.83859 * 26 25 24 28 28 H 1.09004 * 109.47517 * 59.99768 * 1 2 3 29 29 H 1.09002 * 109.47263 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47214 * 299.99405 * 1 2 3 31 31 H 1.08993 * 109.47279 * 60.00335 * 3 2 1 32 32 H 1.09003 * 109.47638 * 300.00131 * 3 2 1 33 33 H 0.97002 * 119.99770 * 355.34165 * 7 5 4 34 34 H 1.08005 * 119.96255 * 0.02562 * 9 8 7 35 35 H 1.08004 * 119.92962 * 180.02562 * 10 9 8 36 36 H 1.07998 * 119.96307 * 180.02562 * 11 10 9 37 37 H 0.96999 * 120.00261 * 179.97438 * 17 16 14 38 38 H 1.07998 * 120.06707 * 359.97438 * 22 8 7 39 39 H 1.09002 * 109.52162 * 296.83676 * 23 4 3 40 40 H 1.09000 * 109.53000 * 57.02678 * 23 4 3 41 41 H 1.09003 * 109.45601 * 182.44852 * 24 23 4 42 42 H 1.08999 * 109.46791 * 62.44331 * 24 23 4 43 43 H 1.08998 * 109.47815 * 178.85458 * 26 25 24 44 44 H 1.09003 * 109.49295 * 58.82868 * 26 25 24 45 45 H 1.09005 * 109.52288 * 297.70359 * 27 26 25 46 46 H 1.08994 * 109.57612 * 177.54600 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9814 0.4371 1.2307 6 8 4.7233 0.9702 2.0286 7 7 3.5559 -0.8237 1.4445 8 6 4.0415 -1.5503 2.5373 9 6 4.3210 -0.9025 3.7344 10 6 4.8000 -1.6193 4.8139 11 6 5.0022 -2.9819 4.7072 12 6 4.7248 -3.6353 3.5132 13 8 4.9233 -4.9743 3.4093 14 6 4.7405 -5.5276 2.1935 15 1 4.3713 -4.9258 1.3763 16 6 5.0266 -6.8693 1.9924 17 7 5.4759 -7.6025 2.9881 18 14 4.7741 -7.6359 0.3078 19 1 6.0220 -7.5065 -0.4869 20 1 4.4335 -9.0729 0.4638 21 1 3.6665 -6.9377 -0.3927 22 6 4.2392 -2.9190 2.4285 23 6 3.9900 0.4283 -1.2515 24 6 5.5219 0.3822 -1.2799 25 8 6.0388 1.7142 -1.2512 26 6 5.6836 2.4528 -0.0805 27 6 4.1603 2.5832 -0.0039 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.6886 1.8463 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 2.9100 -1.2261 0.8430 34 1 4.1627 0.1624 3.8213 35 1 5.0160 -1.1136 5.7435 36 1 5.3764 -3.5395 5.5531 37 1 5.6757 -8.5412 2.8476 38 1 4.0182 -3.4255 1.5006 39 1 3.5933 -0.5867 -1.2281 40 1 3.6248 0.9426 -2.1405 41 1 5.8532 -0.1167 -2.1907 42 1 5.8849 -0.1675 -0.4115 43 1 6.1316 3.4453 -0.1271 44 1 6.0487 1.9304 0.8038 45 1 3.7985 3.1410 -0.8676 46 1 3.8842 3.1083 0.9105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000290815365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:45 Heat of formation + Delta-G solvation = -123.775182 kcal Electronic energy + Delta-G solvation = -30210.762710 eV Core-core repulsion = 26066.648930 eV Total energy + Delta-G solvation = -4144.113780 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.22938 -39.18623 -38.13069 -38.05206 -36.37370 -34.44376 -34.10011 -32.21685 -31.23319 -29.36202 -28.63940 -28.31511 -26.33296 -25.33636 -24.02489 -23.68571 -22.54969 -21.76872 -20.95372 -19.41263 -17.92619 -17.61976 -16.83570 -16.74866 -16.52030 -16.06463 -15.84346 -15.50588 -15.26176 -14.97703 -14.80738 -14.62673 -14.24448 -14.03215 -13.91809 -13.64007 -13.50763 -12.96561 -12.72102 -12.58443 -12.46619 -12.25466 -12.17975 -11.77904 -11.67975 -11.52699 -11.42716 -11.13578 -11.01985 -10.84401 -10.75536 -10.55696 -10.45076 -10.09184 -9.81224 -9.66877 -9.47373 -9.16925 -8.78824 -7.69487 -7.13734 -6.43503 -4.03198 1.97346 2.39827 2.78812 3.12238 3.13680 3.16860 3.17704 3.39217 3.81094 3.96942 4.28928 4.37310 4.53956 4.61515 4.79621 4.82299 4.96217 4.98990 5.08129 5.10397 5.10734 5.16136 5.31640 5.39986 5.40247 5.44254 5.47744 5.58235 5.65645 5.73459 5.82419 5.86502 5.97661 6.03844 6.14155 6.29804 6.35026 6.66571 6.70937 7.01759 7.03657 7.11302 7.15637 7.33379 7.44530 7.77145 7.86638 8.00905 8.37700 9.02016 9.72556 10.74623 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.003631 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.418300 B = 7709.551506 C = 8186.631331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.074 3.926 4 C -0.077 4.077 5 C 0.523 3.477 6 O -0.523 6.523 7 N -0.654 5.654 8 C 0.178 3.822 9 C -0.206 4.206 10 C -0.065 4.065 11 C -0.200 4.200 12 C 0.168 3.832 13 O -0.177 6.177 14 C -0.392 4.392 15 H 0.090 0.910 16 C 0.040 3.960 17 N -0.863 5.863 18 Si 0.939 3.061 19 H -0.273 1.273 20 H -0.278 1.278 21 H -0.268 1.268 22 C -0.255 4.255 23 C -0.139 4.139 24 C 0.056 3.944 25 O -0.383 6.383 26 C 0.050 3.950 27 C -0.126 4.126 28 H 0.043 0.957 29 H 0.091 0.909 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.414 0.586 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.270 0.730 38 H 0.129 0.871 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.093 0.907 44 H 0.080 0.920 45 H 0.078 0.922 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.247 18.421 -8.977 22.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.312 6.312 3 C -0.003 4.003 4 C -0.081 4.081 5 C 0.310 3.690 6 O -0.399 6.399 7 N -0.300 5.300 8 C 0.085 3.915 9 C -0.227 4.227 10 C -0.084 4.084 11 C -0.220 4.220 12 C 0.114 3.886 13 O -0.080 6.080 14 C -0.468 4.468 15 H 0.107 0.893 16 C -0.164 4.164 17 N -0.498 5.498 18 Si 0.764 3.236 19 H -0.199 1.199 20 H -0.203 1.203 21 H -0.193 1.193 22 C -0.276 4.276 23 C -0.177 4.177 24 C -0.021 4.021 25 O -0.302 6.302 26 C -0.027 4.027 27 C -0.164 4.164 28 H 0.061 0.939 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.253 0.747 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.079 0.921 38 H 0.147 0.853 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.072 0.928 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.097 0.903 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.377 18.297 -8.406 21.445 hybrid contribution -0.998 -0.515 -0.997 1.502 sum -8.375 17.782 -9.403 21.789 Atomic orbital electron populations 1.22774 0.79977 1.03382 1.00057 1.87696 1.20581 1.27473 1.95414 1.22518 0.91074 0.85347 1.01365 1.20988 0.94902 0.97382 0.94807 1.20271 0.80277 0.81740 0.86747 1.90650 1.35783 1.67187 1.46264 1.43610 1.44128 1.14002 1.28300 1.17478 0.97285 0.90339 0.86399 1.20667 1.09960 1.00031 0.92005 1.20547 0.97481 0.92927 0.97477 1.20251 1.10342 0.94154 0.97265 1.19063 0.91982 0.84840 0.92763 1.84006 1.76463 1.14701 1.32878 1.21270 1.45579 0.93856 0.86085 0.89254 1.25261 0.96376 0.95395 0.99412 1.70038 1.41098 1.07649 1.31009 0.85743 0.78914 0.78573 0.80369 1.19894 1.20268 1.19262 1.20815 1.12773 0.92797 1.01254 1.22257 0.97409 1.01845 0.96188 1.22656 0.92207 0.84412 1.02846 1.87896 1.74641 1.25412 1.42268 1.22819 0.93241 0.97214 0.89399 1.21971 0.97459 0.93600 1.03374 0.93864 0.89068 0.93845 0.92425 0.91751 0.74679 0.85986 0.86733 0.86459 0.92056 0.85336 0.89435 0.89877 0.88323 0.92805 0.88898 0.90213 0.90346 0.89844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -3.89 7.54 -35.23 -0.27 -4.15 16 3 C 0.07 0.66 4.81 37.16 0.18 0.84 16 4 C -0.08 -0.84 0.53 -155.48 -0.08 -0.93 16 5 C 0.52 7.77 4.98 -10.99 -0.05 7.71 16 6 O -0.52 -9.11 11.29 5.55 0.06 -9.05 16 7 N -0.65 -10.44 4.91 -9.88 -0.05 -10.48 16 8 C 0.18 3.48 6.29 -83.72 -0.53 2.96 16 9 C -0.21 -4.01 8.69 -39.35 -0.34 -4.35 16 10 C -0.07 -1.25 10.03 -39.64 -0.40 -1.65 16 11 C -0.20 -4.36 9.99 -39.36 -0.39 -4.76 16 12 C 0.17 4.11 6.64 -39.14 -0.26 3.85 16 13 O -0.18 -5.06 9.76 0.04 0.00 -5.06 16 14 C -0.39 -10.90 9.49 30.88 0.29 -10.60 16 15 H 0.09 2.29 5.20 -52.49 -0.27 2.02 16 16 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 17 N -0.86 -25.28 13.67 55.48 0.76 -24.52 16 18 Si 0.94 20.39 29.55 -169.99 -5.02 15.37 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 20 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 C -0.25 -5.61 9.08 -39.21 -0.36 -5.96 16 23 C -0.14 -1.44 4.69 -26.49 -0.12 -1.57 16 24 C 0.06 0.67 6.62 37.30 0.25 0.92 16 25 O -0.38 -4.98 10.77 -35.23 -0.38 -5.36 16 26 C 0.05 0.59 6.55 37.20 0.24 0.83 16 27 C -0.13 -1.25 4.56 -26.59 -0.12 -1.37 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.41 5.96 6.15 -40.82 -0.25 5.71 16 34 H 0.12 2.32 6.23 -52.48 -0.33 1.99 16 35 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 36 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 37 H 0.27 7.24 8.31 -40.82 -0.34 6.91 16 38 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 39 H 0.09 0.92 7.27 -51.93 -0.38 0.54 16 40 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.78 7.38 -51.93 -0.38 0.39 16 43 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 44 H 0.08 1.15 5.81 -51.93 -0.30 0.85 16 45 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.81 8.02 -51.93 -0.42 0.39 16 LS Contribution 367.67 15.07 5.54 5.54 Total: -1.00 -32.72 367.67 -6.45 -39.17 By element: Atomic # 1 Polarization: 16.69 SS G_CDS: -6.41 Total: 10.28 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: -0.68 Total: -11.73 kcal Atomic # 7 Polarization: -35.72 SS G_CDS: 0.71 Total: -35.01 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.58 Total: -23.62 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.72 -6.45 -39.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290815365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.609 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds