Wall clock time and date at job start Tue Mar 31 2020 19:06:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42894 * 113.99808 * 2 1 4 4 C 1.53004 * 109.46895 * 179.97438 * 3 2 1 5 5 C 1.50691 * 109.54601 * 300.00432 * 4 3 2 6 6 O 1.21294 * 119.99978 * 240.00088 * 5 4 3 7 7 N 1.34777 * 120.00394 * 59.99468 * 5 4 3 8 8 C 1.39925 * 120.00123 * 175.61258 * 7 5 4 9 9 C 1.38960 * 120.03794 * 35.11219 * 8 7 5 10 10 C 1.38151 * 120.06780 * 179.97438 * 9 8 7 11 11 C 1.38167 * 120.14021 * 359.97438 * 10 9 8 12 12 C 1.38910 * 120.06871 * 0.02562 * 11 10 9 13 13 O 1.35758 * 120.03319 * 180.02562 * 12 11 10 14 14 C 1.34826 * 116.99949 * 185.33799 * 13 12 11 15 15 H 1.07996 * 119.99965 * 354.98358 * 14 13 12 16 16 C 1.38649 * 119.99843 * 174.98014 * 14 13 12 17 17 N 1.31562 * 120.00091 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 120.00120 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.46939 * 90.00459 * 18 16 14 20 20 H 1.48506 * 109.47342 * 209.99857 * 18 16 14 21 21 H 1.48494 * 109.47198 * 330.00359 * 18 16 14 22 22 C 1.38716 * 120.03389 * 214.83912 * 8 7 5 23 23 C 1.53181 * 109.54065 * 60.18215 * 4 3 2 24 24 C 1.53283 * 109.06194 * 176.85358 * 23 4 3 25 25 O 1.42906 * 109.45770 * 302.43853 * 24 23 4 26 26 C 1.42905 * 114.09548 * 61.16304 * 25 24 23 27 27 C 1.53086 * 109.41382 * 298.83859 * 26 25 24 28 28 H 1.09004 * 109.47517 * 59.99768 * 1 2 3 29 29 H 1.09002 * 109.47263 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47214 * 299.99405 * 1 2 3 31 31 H 1.08993 * 109.47279 * 60.00335 * 3 2 1 32 32 H 1.09003 * 109.47638 * 300.00131 * 3 2 1 33 33 H 0.97002 * 119.99770 * 355.34165 * 7 5 4 34 34 H 1.08005 * 119.96255 * 0.02562 * 9 8 7 35 35 H 1.08004 * 119.92962 * 180.02562 * 10 9 8 36 36 H 1.07998 * 119.96307 * 180.02562 * 11 10 9 37 37 H 0.96999 * 120.00261 * 179.97438 * 17 16 14 38 38 H 1.07998 * 120.06707 * 359.97438 * 22 8 7 39 39 H 1.09002 * 109.52162 * 296.83676 * 23 4 3 40 40 H 1.09000 * 109.53000 * 57.02678 * 23 4 3 41 41 H 1.09003 * 109.45601 * 182.44852 * 24 23 4 42 42 H 1.08999 * 109.46791 * 62.44331 * 24 23 4 43 43 H 1.08998 * 109.47815 * 178.85458 * 26 25 24 44 44 H 1.09003 * 109.49295 * 58.82868 * 26 25 24 45 45 H 1.09005 * 109.52288 * 297.70359 * 27 26 25 46 46 H 1.08994 * 109.57612 * 177.54600 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 3.9814 0.4371 1.2307 6 8 4.7233 0.9702 2.0286 7 7 3.5559 -0.8237 1.4445 8 6 4.0415 -1.5503 2.5373 9 6 4.3210 -0.9025 3.7344 10 6 4.8000 -1.6193 4.8139 11 6 5.0022 -2.9819 4.7072 12 6 4.7248 -3.6353 3.5132 13 8 4.9233 -4.9743 3.4093 14 6 4.7405 -5.5276 2.1935 15 1 4.3713 -4.9258 1.3763 16 6 5.0266 -6.8693 1.9924 17 7 5.4759 -7.6025 2.9881 18 14 4.7741 -7.6359 0.3078 19 1 6.0220 -7.5065 -0.4869 20 1 4.4335 -9.0729 0.4638 21 1 3.6665 -6.9377 -0.3927 22 6 4.2392 -2.9190 2.4285 23 6 3.9900 0.4283 -1.2515 24 6 5.5219 0.3822 -1.2799 25 8 6.0388 1.7142 -1.2512 26 6 5.6836 2.4528 -0.0805 27 6 4.1603 2.5832 -0.0039 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.6886 1.8463 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 2.9100 -1.2261 0.8430 34 1 4.1627 0.1624 3.8213 35 1 5.0160 -1.1136 5.7435 36 1 5.3764 -3.5395 5.5531 37 1 5.6757 -8.5412 2.8476 38 1 4.0182 -3.4255 1.5006 39 1 3.5933 -0.5867 -1.2281 40 1 3.6248 0.9426 -2.1405 41 1 5.8532 -0.1167 -2.1907 42 1 5.8849 -0.1675 -0.4115 43 1 6.1316 3.4453 -0.1271 44 1 6.0487 1.9304 0.8038 45 1 3.7985 3.1410 -0.8676 46 1 3.8842 3.1083 0.9105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000290815365.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:06:44 Heat of formation + Delta-G solvation = -146.172111 kcal Electronic energy + Delta-G solvation = -30211.733913 eV Core-core repulsion = 26066.648930 eV Total energy + Delta-G solvation = -4145.084984 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.33168 -40.79469 -39.48496 -38.78123 -38.02196 -35.68455 -35.22618 -34.22238 -32.13740 -30.98212 -30.23178 -29.16564 -27.34829 -26.98393 -25.11516 -24.57254 -23.58976 -23.48197 -22.36562 -20.74428 -19.66377 -19.21834 -18.01365 -17.53188 -17.48655 -17.08114 -16.86514 -16.81752 -16.64821 -16.28507 -16.05022 -15.88278 -15.70237 -15.51970 -15.31558 -14.93728 -14.67465 -14.46074 -14.23410 -13.60574 -13.41337 -13.33036 -13.31114 -13.15055 -12.94459 -12.74762 -12.69697 -12.47257 -12.36313 -12.25687 -12.12106 -11.69991 -11.54249 -11.43218 -11.21074 -10.84907 -10.72706 -10.63131 -10.34043 -9.35900 -8.88942 -8.46645 -6.15596 0.37822 0.68370 1.35310 1.44068 1.52754 1.54008 2.01399 2.17893 2.60562 2.84020 2.90621 3.15250 3.43983 3.47178 3.49768 3.71251 3.86004 3.99901 4.11085 4.19635 4.31815 4.32753 4.39903 4.44709 4.53165 4.55477 4.58130 4.62013 4.62578 4.66891 4.74117 4.78185 4.81822 4.92861 5.00337 5.01244 5.02488 5.10758 5.15315 5.40436 5.50120 5.65736 5.66245 6.01360 6.10635 6.16575 6.17938 6.49486 6.97577 7.12104 7.76560 8.76306 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.003631 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.418300 B = 7709.551506 C = 8186.631331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.415 6.415 3 C 0.076 3.924 4 C -0.071 4.071 5 C 0.520 3.480 6 O -0.549 6.549 7 N -0.651 5.651 8 C 0.184 3.816 9 C -0.200 4.200 10 C -0.053 4.053 11 C -0.214 4.214 12 C 0.135 3.865 13 O -0.226 6.226 14 C -0.414 4.414 15 H 0.101 0.899 16 C -0.021 4.021 17 N -0.919 5.919 18 Si 1.017 2.983 19 H -0.265 1.265 20 H -0.271 1.271 21 H -0.250 1.250 22 C -0.260 4.260 23 C -0.133 4.133 24 C 0.052 3.948 25 O -0.393 6.393 26 C 0.045 3.955 27 C -0.121 4.121 28 H 0.063 0.937 29 H 0.090 0.910 30 H 0.045 0.955 31 H 0.060 0.940 32 H 0.097 0.903 33 H 0.422 0.578 34 H 0.134 0.866 35 H 0.154 0.846 36 H 0.119 0.881 37 H 0.273 0.727 38 H 0.126 0.874 39 H 0.085 0.915 40 H 0.111 0.889 41 H 0.114 0.886 42 H 0.019 0.981 43 H 0.113 0.887 44 H 0.046 0.954 45 H 0.110 0.890 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.958 21.143 -11.359 25.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.334 6.334 3 C -0.001 4.001 4 C -0.075 4.075 5 C 0.309 3.691 6 O -0.427 6.427 7 N -0.298 5.298 8 C 0.089 3.911 9 C -0.221 4.221 10 C -0.071 4.071 11 C -0.234 4.234 12 C 0.084 3.916 13 O -0.132 6.132 14 C -0.490 4.490 15 H 0.118 0.882 16 C -0.218 4.218 17 N -0.557 5.557 18 Si 0.836 3.164 19 H -0.190 1.190 20 H -0.195 1.195 21 H -0.173 1.173 22 C -0.281 4.281 23 C -0.171 4.171 24 C -0.025 4.025 25 O -0.312 6.312 26 C -0.031 4.031 27 C -0.158 4.158 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.078 0.922 32 H 0.115 0.885 33 H 0.263 0.737 34 H 0.152 0.848 35 H 0.171 0.829 36 H 0.137 0.863 37 H 0.082 0.918 38 H 0.143 0.857 39 H 0.103 0.897 40 H 0.130 0.870 41 H 0.132 0.868 42 H 0.038 0.962 43 H 0.131 0.869 44 H 0.064 0.936 45 H 0.128 0.872 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.118 21.085 -10.799 25.383 hybrid contribution -0.452 -1.069 -0.162 1.172 sum -9.570 20.016 -10.961 24.746 Atomic orbital electron populations 1.22903 0.78698 1.03787 1.01170 1.87651 1.21993 1.28145 1.95627 1.22574 0.89110 0.85351 1.03058 1.21053 0.96717 0.97228 0.92456 1.21140 0.79247 0.81026 0.87717 1.90636 1.36745 1.67638 1.47687 1.43678 1.44274 1.14399 1.27471 1.17558 0.96091 0.89703 0.87706 1.20974 1.08669 1.00563 0.91863 1.20942 0.95544 0.91711 0.98942 1.20481 1.10895 0.95371 0.96645 1.19580 0.93270 0.84180 0.94616 1.83974 1.78802 1.16786 1.33642 1.21788 1.46045 0.94646 0.86489 0.88166 1.26572 0.95680 0.95540 1.04042 1.70185 1.43470 1.08185 1.33870 0.84619 0.79549 0.77613 0.74655 1.19018 1.19545 1.17309 1.20820 1.12953 0.93848 1.00518 1.22251 0.95733 1.02142 0.96957 1.22714 0.93722 0.83971 1.02057 1.87885 1.75216 1.25587 1.42502 1.22876 0.95012 0.97472 0.87751 1.21985 0.95724 0.93170 1.04968 0.91817 0.89148 0.93630 0.92209 0.88529 0.73695 0.84809 0.82865 0.86277 0.91816 0.85677 0.89664 0.87047 0.86833 0.96236 0.86945 0.93563 0.87199 0.89533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -7.02 7.54 -148.98 -1.12 -8.14 16 3 C 0.08 1.07 4.81 71.98 0.35 1.41 16 4 C -0.07 -1.36 0.53 -52.81 -0.03 -1.38 16 5 C 0.52 14.75 4.98 87.65 0.44 15.19 16 6 O -0.55 -18.69 11.29 -3.07 -0.03 -18.72 16 7 N -0.65 -20.20 4.91 -303.56 -1.49 -21.69 16 8 C 0.18 7.16 6.29 38.14 0.24 7.40 16 9 C -0.20 -7.57 8.69 22.42 0.19 -7.38 16 10 C -0.05 -1.97 10.03 22.23 0.22 -1.75 16 11 C -0.21 -9.53 9.99 22.41 0.22 -9.30 16 12 C 0.13 6.89 6.64 22.56 0.15 7.04 16 13 O -0.23 -13.67 9.76 -22.79 -0.22 -13.89 16 14 C -0.41 -24.04 9.49 67.92 0.64 -23.39 16 15 H 0.10 5.33 5.20 -2.91 -0.02 5.32 16 16 C -0.02 -1.17 5.49 84.83 0.47 -0.70 16 17 N -0.92 -56.33 13.67 21.61 0.30 -56.03 16 18 Si 1.02 42.42 29.55 68.60 2.03 44.45 16 19 H -0.27 -10.60 7.11 99.48 0.71 -9.90 16 20 H -0.27 -10.86 7.11 99.48 0.71 -10.16 16 21 H -0.25 -9.53 7.11 99.48 0.71 -8.82 16 22 C -0.26 -11.73 9.08 22.51 0.20 -11.53 16 23 C -0.13 -2.39 4.69 30.75 0.14 -2.25 16 24 C 0.05 1.20 6.62 72.08 0.48 1.67 16 25 O -0.39 -9.55 10.77 -148.98 -1.60 -11.15 16 26 C 0.05 0.99 6.55 72.01 0.47 1.46 16 27 C -0.12 -2.01 4.56 30.68 0.14 -1.87 16 28 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 29 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.42 11.70 6.15 -92.71 -0.57 11.13 16 34 H 0.13 4.83 6.23 -2.91 -0.02 4.82 16 35 H 0.15 4.49 8.06 -2.91 -0.02 4.46 16 36 H 0.12 5.14 8.06 -2.91 -0.02 5.12 16 37 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 38 H 0.13 5.62 5.64 -2.91 -0.02 5.61 16 39 H 0.08 1.60 7.27 -2.39 -0.02 1.58 16 40 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.02 0.57 7.38 -2.39 -0.02 0.55 16 43 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.05 1.33 5.81 -2.39 -0.01 1.32 16 45 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.09 1.42 8.02 -2.39 -0.02 1.40 16 Total: -1.00 -75.55 367.67 3.87 -71.68 By element: Atomic # 1 Polarization: 36.83 SS G_CDS: 0.44 Total: 37.27 kcal Atomic # 6 Polarization: -29.36 SS G_CDS: 5.58 Total: -23.77 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -1.19 Total: -77.72 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -2.98 Total: -51.90 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -75.55 3.87 -71.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000290815365.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.492 kcal (2) G-P(sol) polarization free energy of solvation -75.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds