Wall clock time and date at job start Tue Mar 31 2020 19:08:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99822 * 2 1 4 4 C 1.52996 * 109.46680 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46956 * 184.82512 * 4 3 2 6 6 H 1.08995 * 109.71185 * 299.22961 * 5 4 3 7 7 C 1.53304 * 109.67704 * 59.76057 * 5 4 3 8 8 O 1.42969 * 109.21780 * 172.02598 * 7 5 4 9 9 C 1.42964 * 114.16396 * 297.41787 * 8 7 5 10 10 C 1.52879 * 109.29881 * 62.45501 * 9 8 7 11 11 N 1.47151 * 109.68360 * 178.68702 * 5 4 3 12 12 C 1.34781 * 120.98230 * 9.72041 * 11 5 4 13 13 O 1.21586 * 119.99588 * 354.79690 * 12 11 5 14 14 C 1.47534 * 120.00031 * 174.79645 * 12 11 5 15 15 C 1.39666 * 120.19565 * 331.46963 * 14 12 11 16 16 C 1.37830 * 119.91482 * 180.23072 * 15 14 12 17 17 C 1.38574 * 120.32531 * 359.49322 * 16 15 14 18 18 C 1.38022 * 120.39835 * 0.50739 * 17 16 15 19 19 C 1.38837 * 120.07732 * 359.75167 * 18 17 16 20 20 O 1.35514 * 120.16451 * 180.02562 * 19 18 17 21 21 C 1.34820 * 117.00289 * 5.73684 * 20 19 18 22 22 H 1.08003 * 119.99166 * 5.14080 * 21 20 19 23 23 C 1.38696 * 120.00213 * 185.14256 * 21 20 19 24 24 N 1.31516 * 119.99685 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99830 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47226 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47090 * 119.99947 * 25 23 21 28 28 H 1.48504 * 109.46972 * 240.00144 * 25 23 21 29 29 H 1.08998 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47266 * 300.00023 * 1 2 3 31 31 H 1.09002 * 109.47228 * 59.99701 * 1 2 3 32 32 H 1.08998 * 109.46818 * 60.00135 * 3 2 1 33 33 H 1.08998 * 109.47026 * 299.99922 * 3 2 1 34 34 H 1.09006 * 109.47000 * 64.83010 * 4 3 2 35 35 H 1.08998 * 109.47694 * 304.82655 * 4 3 2 36 36 H 1.09000 * 109.50996 * 291.94807 * 7 5 4 37 37 H 1.08998 * 109.51480 * 52.05152 * 7 5 4 38 38 H 1.09001 * 109.50713 * 182.51220 * 9 8 7 39 39 H 1.09005 * 109.51227 * 302.60769 * 9 8 7 40 40 H 1.09003 * 109.61586 * 188.11366 * 10 9 8 41 41 H 1.08996 * 109.52431 * 67.69469 * 10 9 8 42 42 H 1.07998 * 120.04335 * 359.95671 * 15 14 12 43 43 H 1.08003 * 119.83569 * 179.72451 * 16 15 14 44 44 H 1.07994 * 119.79919 * 180.25815 * 17 16 15 45 45 H 1.08008 * 119.96165 * 179.72440 * 18 17 16 46 46 H 0.97006 * 119.99659 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1573 2.5773 0.1220 6 1 3.8553 3.1901 -0.7273 7 6 3.6941 3.2377 1.4257 8 8 4.4207 4.4533 1.6214 9 6 5.8310 4.2744 1.7727 10 6 6.4033 3.6657 0.4924 11 7 5.6241 2.4640 0.1547 12 6 6.2356 1.2927 -0.1112 13 8 5.5740 0.2884 -0.2900 14 6 7.7077 1.2293 -0.1854 15 6 8.4405 2.3528 -0.5741 16 6 9.8153 2.2857 -0.6460 17 6 10.4763 1.1110 -0.3242 18 6 9.7652 -0.0072 0.0616 19 6 8.3796 0.0402 0.1346 20 8 7.6797 -1.0565 0.5137 21 6 8.3917 -2.1264 0.9213 22 1 9.4655 -2.0567 1.0142 23 6 7.7453 -3.3163 1.2211 24 7 6.4377 -3.4008 1.1083 25 14 8.7320 -4.7988 1.7850 26 1 10.1739 -4.4463 1.8284 27 1 8.2809 -5.2075 3.1394 28 1 8.5258 -5.9213 0.8348 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8635 0.7200 -0.9293 35 1 3.8510 0.5711 0.8444 36 1 2.6281 3.4565 1.3642 37 1 3.8797 2.5631 2.2615 38 1 6.3022 5.2390 1.9611 39 1 6.0252 3.6046 2.6105 40 1 7.4469 3.3940 0.6511 41 1 6.3312 4.3899 -0.3190 42 1 7.9304 3.2718 -0.8224 43 1 10.3805 3.1540 -0.9511 44 1 11.5540 1.0691 -0.3795 45 1 10.2873 -0.9205 0.3066 46 1 5.9856 -4.2330 1.3183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291454900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:43 Heat of formation + Delta-G solvation = -82.539049 kcal Electronic energy + Delta-G solvation = -30303.724744 eV Core-core repulsion = 26161.399097 eV Total energy + Delta-G solvation = -4142.325647 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.54448 -39.01916 -37.73171 -37.56741 -36.50053 -34.47733 -33.68434 -32.36448 -30.34231 -29.55032 -28.93995 -27.30732 -26.02781 -25.46735 -24.43175 -23.37089 -22.00413 -21.54200 -20.85541 -19.17596 -18.07984 -17.15656 -16.66518 -16.50720 -16.21067 -15.72017 -15.55844 -15.22575 -15.10391 -14.87495 -14.68822 -14.54637 -14.23672 -13.96024 -13.60539 -13.51415 -13.12576 -12.89823 -12.66430 -12.48362 -12.24538 -12.00204 -11.73026 -11.61493 -11.43516 -11.26006 -11.10136 -10.98167 -10.93443 -10.84641 -10.65402 -10.52519 -10.41812 -10.02192 -9.54462 -9.48944 -8.89794 -8.46383 -8.24866 -8.08508 -7.34621 -6.46387 -4.06934 1.69524 2.26063 3.10753 3.11548 3.15108 3.17501 3.59880 3.73626 3.91744 3.99034 4.51500 4.74225 4.94768 4.99567 5.04146 5.08938 5.15539 5.18356 5.23458 5.28821 5.38584 5.44313 5.44881 5.48416 5.49190 5.57683 5.63057 5.68487 5.68960 5.73662 5.79316 5.89369 5.98110 6.11720 6.52276 6.54170 6.56132 6.68715 6.90652 6.98106 7.02574 7.09351 7.21498 7.25539 7.37155 7.65517 7.83288 7.94454 8.92606 8.96872 9.63528 10.67440 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008642 B = 0.004885 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.115107 B = 5729.914592 C = 8305.741881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.380 6.380 3 C 0.055 3.945 4 C -0.110 4.110 5 C 0.125 3.875 6 H 0.074 0.926 7 C 0.047 3.953 8 O -0.383 6.383 9 C 0.044 3.956 10 C 0.059 3.941 11 N -0.621 5.621 12 C 0.564 3.436 13 O -0.491 6.491 14 C -0.227 4.227 15 C -0.054 4.054 16 C -0.230 4.230 17 C -0.052 4.052 18 C -0.236 4.236 19 C 0.190 3.810 20 O -0.132 6.132 21 C -0.403 4.403 22 H 0.094 0.906 23 C 0.045 3.955 24 N -0.832 5.832 25 Si 0.940 3.060 26 H -0.266 1.266 27 H -0.275 1.275 28 H -0.274 1.274 29 H 0.084 0.916 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.101 0.899 37 H 0.059 0.941 38 H 0.103 0.897 39 H 0.057 0.943 40 H 0.119 0.881 41 H 0.071 0.929 42 H 0.127 0.873 43 H 0.110 0.890 44 H 0.110 0.890 45 H 0.132 0.868 46 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.312 13.957 -0.347 14.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.299 6.299 3 C -0.022 4.022 4 C -0.147 4.147 5 C 0.022 3.978 6 H 0.092 0.908 7 C -0.031 4.031 8 O -0.302 6.302 9 C -0.033 4.033 10 C -0.064 4.064 11 N -0.359 5.359 12 C 0.356 3.644 13 O -0.365 6.365 14 C -0.232 4.232 15 C -0.073 4.073 16 C -0.249 4.249 17 C -0.070 4.070 18 C -0.255 4.255 19 C 0.131 3.869 20 O -0.030 6.030 21 C -0.479 4.479 22 H 0.111 0.889 23 C -0.163 4.163 24 N -0.463 5.463 25 Si 0.765 3.235 26 H -0.190 1.190 27 H -0.200 1.200 28 H -0.200 1.200 29 H 0.102 0.898 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.121 0.879 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.075 0.925 40 H 0.136 0.864 41 H 0.090 0.910 42 H 0.144 0.856 43 H 0.128 0.872 44 H 0.128 0.872 45 H 0.149 0.851 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.115 13.107 -0.386 13.744 hybrid contribution 0.541 -0.623 0.242 0.860 sum -3.574 12.485 -0.144 12.987 Atomic orbital electron populations 1.22720 0.81796 1.02591 0.99421 1.88013 1.18919 1.27741 1.95217 1.22780 0.95682 0.84639 0.99122 1.22042 0.90217 0.94687 1.07753 1.21678 0.80679 0.97639 0.97840 0.90803 1.23193 0.96402 0.86685 0.96773 1.87908 1.18757 1.30307 1.93209 1.22988 0.81711 1.01679 0.96969 1.22959 0.98651 0.87447 0.97366 1.47991 1.05242 1.10141 1.72560 1.18289 0.87686 0.81953 0.76508 1.90936 1.64549 1.33509 1.47491 1.18792 0.92004 0.93928 1.18428 1.21184 0.94117 0.95955 0.96000 1.20497 0.93962 0.98553 1.11915 1.20909 0.98683 0.92551 0.94874 1.21165 0.93639 1.00166 1.10575 1.19221 0.90075 0.87476 0.90126 1.84117 1.33817 1.18124 1.66981 1.21496 0.92252 0.88671 1.45462 0.88850 1.25382 0.96044 0.98196 0.96701 1.70121 1.07437 1.26971 1.41769 0.85666 0.79207 0.80101 0.78556 1.18989 1.20025 1.19978 0.89768 0.94429 0.94450 0.93963 0.93854 0.87867 0.89161 0.88112 0.92240 0.87872 0.92493 0.86353 0.91047 0.85589 0.87189 0.87183 0.85067 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 11.01 101.05 1.11 1.49 16 2 O -0.38 -6.41 10.70 -35.23 -0.38 -6.79 16 3 C 0.05 0.79 5.72 37.16 0.21 1.00 16 4 C -0.11 -1.94 3.54 -26.73 -0.09 -2.03 16 5 C 0.13 1.89 3.21 -67.42 -0.22 1.67 16 6 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 7 C 0.05 0.62 5.68 37.31 0.21 0.83 16 8 O -0.38 -5.05 10.74 -35.23 -0.38 -5.43 16 9 C 0.04 0.52 6.97 37.10 0.26 0.78 16 10 C 0.06 0.76 4.83 -3.75 -0.02 0.74 16 11 N -0.62 -10.44 3.03 -166.21 -0.50 -10.94 16 12 C 0.56 12.18 7.31 -12.47 -0.09 12.09 16 13 O -0.49 -12.70 11.25 -14.17 -0.16 -12.86 16 14 C -0.23 -4.82 5.50 -104.81 -0.58 -5.40 16 15 C -0.05 -0.91 7.43 -39.20 -0.29 -1.20 16 16 C -0.23 -3.64 10.02 -39.61 -0.40 -4.03 16 17 C -0.05 -0.89 10.03 -39.54 -0.40 -1.28 16 18 C -0.24 -4.98 9.13 -39.44 -0.36 -5.34 16 19 C 0.19 4.63 6.63 -38.60 -0.26 4.37 16 20 O -0.13 -3.82 8.23 -18.66 -0.15 -3.98 16 21 C -0.40 -11.27 9.45 30.90 0.29 -10.98 16 22 H 0.09 2.38 5.29 -52.48 -0.28 2.10 16 23 C 0.04 1.24 5.49 -17.52 -0.10 1.14 16 24 N -0.83 -24.94 13.67 55.48 0.76 -24.18 16 25 Si 0.94 20.46 29.55 -169.99 -5.02 15.43 16 26 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 27 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 28 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.04 0.52 6.38 -51.93 -0.33 0.19 16 33 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.10 2.15 6.36 -51.93 -0.33 1.82 16 35 H 0.09 1.94 7.19 -51.93 -0.37 1.57 16 36 H 0.10 1.08 6.80 -51.93 -0.35 0.73 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.12 1.55 4.30 -51.93 -0.22 1.32 16 41 H 0.07 0.78 7.92 -51.93 -0.41 0.37 16 42 H 0.13 1.70 5.25 -52.49 -0.28 1.42 16 43 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 44 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 45 H 0.13 2.76 5.71 -52.48 -0.30 2.46 16 46 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 365.20 15.07 5.50 5.50 Total: -1.00 -34.62 365.20 -7.28 -41.90 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -6.24 Total: 7.50 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: -0.71 Total: -6.16 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.26 Total: -35.12 kcal Atomic # 8 Polarization: -27.99 SS G_CDS: -1.07 Total: -29.06 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.62 -7.28 -41.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291454900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.640 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds