Wall clock time and date at job start Tue Mar 31 2020 19:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42906 * 113.99822 * 2 1 4 4 C 1.52996 * 109.46680 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.46956 * 184.82512 * 4 3 2 6 6 H 1.08995 * 109.71185 * 299.22961 * 5 4 3 7 7 C 1.53304 * 109.67704 * 59.76057 * 5 4 3 8 8 O 1.42969 * 109.21780 * 172.02598 * 7 5 4 9 9 C 1.42964 * 114.16396 * 297.41787 * 8 7 5 10 10 C 1.52879 * 109.29881 * 62.45501 * 9 8 7 11 11 N 1.47151 * 109.68360 * 178.68702 * 5 4 3 12 12 C 1.34781 * 120.98230 * 9.72041 * 11 5 4 13 13 O 1.21586 * 119.99588 * 354.79690 * 12 11 5 14 14 C 1.47534 * 120.00031 * 174.79645 * 12 11 5 15 15 C 1.39666 * 120.19565 * 331.46963 * 14 12 11 16 16 C 1.37830 * 119.91482 * 180.23072 * 15 14 12 17 17 C 1.38574 * 120.32531 * 359.49322 * 16 15 14 18 18 C 1.38022 * 120.39835 * 0.50739 * 17 16 15 19 19 C 1.38837 * 120.07732 * 359.75167 * 18 17 16 20 20 O 1.35514 * 120.16451 * 180.02562 * 19 18 17 21 21 C 1.34820 * 117.00289 * 5.73684 * 20 19 18 22 22 H 1.08003 * 119.99166 * 5.14080 * 21 20 19 23 23 C 1.38696 * 120.00213 * 185.14256 * 21 20 19 24 24 N 1.31516 * 119.99685 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99830 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.47226 * 359.97438 * 25 23 21 27 27 H 1.48493 * 109.47090 * 119.99947 * 25 23 21 28 28 H 1.48504 * 109.46972 * 240.00144 * 25 23 21 29 29 H 1.08998 * 109.47309 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47266 * 300.00023 * 1 2 3 31 31 H 1.09002 * 109.47228 * 59.99701 * 1 2 3 32 32 H 1.08998 * 109.46818 * 60.00135 * 3 2 1 33 33 H 1.08998 * 109.47026 * 299.99922 * 3 2 1 34 34 H 1.09006 * 109.47000 * 64.83010 * 4 3 2 35 35 H 1.08998 * 109.47694 * 304.82655 * 4 3 2 36 36 H 1.09000 * 109.50996 * 291.94807 * 7 5 4 37 37 H 1.08998 * 109.51480 * 52.05152 * 7 5 4 38 38 H 1.09001 * 109.50713 * 182.51220 * 9 8 7 39 39 H 1.09005 * 109.51227 * 302.60769 * 9 8 7 40 40 H 1.09003 * 109.61586 * 188.11366 * 10 9 8 41 41 H 1.08996 * 109.52431 * 67.69469 * 10 9 8 42 42 H 1.07998 * 120.04335 * 359.95671 * 15 14 12 43 43 H 1.08003 * 119.83569 * 179.72451 * 16 15 14 44 44 H 1.07994 * 119.79919 * 180.25815 * 17 16 15 45 45 H 1.08008 * 119.96165 * 179.72440 * 18 17 16 46 46 H 0.97006 * 119.99659 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1573 2.5773 0.1220 6 1 3.8553 3.1901 -0.7273 7 6 3.6941 3.2377 1.4257 8 8 4.4207 4.4533 1.6214 9 6 5.8310 4.2744 1.7727 10 6 6.4033 3.6657 0.4924 11 7 5.6241 2.4640 0.1547 12 6 6.2356 1.2927 -0.1112 13 8 5.5740 0.2884 -0.2900 14 6 7.7077 1.2293 -0.1854 15 6 8.4405 2.3528 -0.5741 16 6 9.8153 2.2857 -0.6460 17 6 10.4763 1.1110 -0.3242 18 6 9.7652 -0.0072 0.0616 19 6 8.3796 0.0402 0.1346 20 8 7.6797 -1.0565 0.5137 21 6 8.3917 -2.1264 0.9213 22 1 9.4655 -2.0567 1.0142 23 6 7.7453 -3.3163 1.2211 24 7 6.4377 -3.4008 1.1083 25 14 8.7320 -4.7988 1.7850 26 1 10.1739 -4.4463 1.8284 27 1 8.2809 -5.2075 3.1394 28 1 8.5258 -5.9213 0.8348 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8635 0.7200 -0.9293 35 1 3.8510 0.5711 0.8444 36 1 2.6281 3.4565 1.3642 37 1 3.8797 2.5631 2.2615 38 1 6.3022 5.2390 1.9611 39 1 6.0252 3.6046 2.6105 40 1 7.4469 3.3940 0.6511 41 1 6.3312 4.3899 -0.3190 42 1 7.9304 3.2718 -0.8224 43 1 10.3805 3.1540 -0.9511 44 1 11.5540 1.0691 -0.3795 45 1 10.2873 -0.9205 0.3066 46 1 5.9856 -4.2330 1.3183 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291454900.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:42 Heat of formation + Delta-G solvation = -108.420827 kcal Electronic energy + Delta-G solvation = -30304.847062 eV Core-core repulsion = 26161.399097 eV Total energy + Delta-G solvation = -4143.447965 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.96554 -40.57802 -39.05045 -38.89550 -38.15204 -35.85964 -34.96462 -34.34351 -31.83426 -30.83557 -30.41523 -28.49961 -27.41117 -27.11117 -25.66153 -24.74718 -23.45919 -22.89808 -22.27596 -20.64682 -19.89561 -18.71912 -18.00518 -17.84058 -17.48199 -16.98654 -16.67156 -16.56580 -16.54258 -16.29010 -16.03264 -15.98663 -15.68609 -15.45002 -15.29455 -14.91146 -14.59267 -14.31319 -14.08681 -14.00822 -13.58743 -13.35454 -13.28946 -13.06958 -12.73710 -12.65789 -12.44668 -12.41515 -12.25015 -12.12811 -12.11994 -11.99507 -11.68334 -11.33918 -11.20690 -10.85303 -10.63210 -10.04836 -9.77827 -9.44052 -9.03893 -8.46507 -6.17853 0.14472 0.69915 1.30329 1.40902 1.50271 1.81184 2.03959 2.13759 2.68094 2.82854 2.92160 3.17637 3.41819 3.57540 3.71457 3.89014 3.94706 4.05724 4.11608 4.15256 4.16956 4.24804 4.28501 4.35580 4.38450 4.49088 4.50500 4.53717 4.59962 4.61090 4.62284 4.79695 4.81144 4.85478 4.94684 5.05927 5.10786 5.11799 5.27153 5.48897 5.57103 5.65140 5.69254 5.93527 6.02620 6.16064 6.28878 6.41190 6.93108 7.38066 7.77837 8.74097 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.008642 B = 0.004885 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3239.115107 B = 5729.914592 C = 8305.741881 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.430 6.430 3 C 0.060 3.940 4 C -0.097 4.097 5 C 0.125 3.875 6 H 0.104 0.896 7 C 0.055 3.945 8 O -0.381 6.381 9 C 0.043 3.957 10 C 0.051 3.949 11 N -0.617 5.617 12 C 0.552 3.448 13 O -0.552 6.552 14 C -0.242 4.242 15 C -0.045 4.045 16 C -0.197 4.197 17 C -0.042 4.042 18 C -0.256 4.256 19 C 0.150 3.850 20 O -0.198 6.198 21 C -0.423 4.423 22 H 0.106 0.894 23 C -0.023 4.023 24 N -0.906 5.906 25 Si 1.021 2.979 26 H -0.244 1.244 27 H -0.269 1.269 28 H -0.270 1.270 29 H 0.087 0.913 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.060 0.940 35 H 0.034 0.966 36 H 0.133 0.867 37 H 0.037 0.963 38 H 0.146 0.854 39 H 0.038 0.962 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.169 0.831 43 H 0.167 0.833 44 H 0.154 0.846 45 H 0.121 0.879 46 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.401 18.922 -0.968 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.350 6.350 3 C -0.017 4.017 4 C -0.135 4.135 5 C 0.022 3.978 6 H 0.121 0.879 7 C -0.022 4.022 8 O -0.299 6.299 9 C -0.034 4.034 10 C -0.070 4.070 11 N -0.353 5.353 12 C 0.344 3.656 13 O -0.430 6.430 14 C -0.247 4.247 15 C -0.063 4.063 16 C -0.215 4.215 17 C -0.060 4.060 18 C -0.275 4.275 19 C 0.095 3.905 20 O -0.101 6.101 21 C -0.499 4.499 22 H 0.124 0.876 23 C -0.222 4.222 24 N -0.542 5.542 25 Si 0.840 3.160 26 H -0.167 1.167 27 H -0.194 1.194 28 H -0.195 1.195 29 H 0.105 0.895 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.078 0.922 35 H 0.052 0.948 36 H 0.151 0.849 37 H 0.055 0.945 38 H 0.163 0.837 39 H 0.057 0.943 40 H 0.136 0.864 41 H 0.127 0.873 42 H 0.187 0.813 43 H 0.185 0.815 44 H 0.171 0.829 45 H 0.139 0.861 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.157 18.197 -1.010 18.352 hybrid contribution 0.077 -1.695 0.302 1.723 sum -2.080 16.503 -0.709 16.648 Atomic orbital electron populations 1.22947 0.79228 1.03563 1.01329 1.87963 1.21932 1.29437 1.95623 1.22779 0.92847 0.84375 1.01651 1.21679 0.93282 0.95450 1.03061 1.21862 0.79551 0.96182 1.00243 0.87853 1.23147 0.98183 0.86375 0.94523 1.87922 1.19367 1.29629 1.92963 1.23165 0.81293 1.03383 0.95555 1.23306 0.98148 0.86175 0.99334 1.48056 1.06471 1.09968 1.70810 1.18621 0.88116 0.82616 0.76279 1.90947 1.65780 1.36053 1.50200 1.19259 0.92432 0.94623 1.18356 1.21689 0.94854 0.95642 0.94093 1.21217 0.93614 0.99386 1.07256 1.21435 1.00807 0.91358 0.92392 1.21300 0.92521 1.01773 1.11939 1.20009 0.91902 0.87478 0.91081 1.84118 1.35396 1.19734 1.70897 1.22003 0.92917 0.89202 1.45811 0.87644 1.26748 0.97138 1.01578 0.96751 1.70325 1.09978 1.27861 1.46069 0.84510 0.78273 0.75254 0.77964 1.16739 1.19401 1.19495 0.89495 0.92476 0.92389 0.91207 0.91027 0.92160 0.94751 0.84908 0.94476 0.83655 0.94315 0.86362 0.87336 0.81350 0.81549 0.82880 0.86103 0.92117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.01 113.37 1.25 1.84 16 2 O -0.43 -15.28 10.70 -148.98 -1.59 -16.87 16 3 C 0.06 1.75 5.72 71.98 0.41 2.17 16 4 C -0.10 -3.72 3.54 30.59 0.11 -3.61 16 5 C 0.12 3.71 3.21 44.97 0.14 3.85 16 6 H 0.10 2.53 8.14 -2.39 -0.02 2.51 16 7 C 0.06 1.37 5.68 72.08 0.41 1.78 16 8 O -0.38 -8.72 10.74 -148.98 -1.60 -10.32 16 9 C 0.04 0.87 6.97 71.94 0.50 1.37 16 10 C 0.05 1.14 4.83 86.21 0.42 1.56 16 11 N -0.62 -20.63 3.03 -798.04 -2.41 -23.04 16 12 C 0.55 25.30 7.31 86.69 0.63 25.94 16 13 O -0.55 -31.87 11.25 14.62 0.16 -31.70 16 14 C -0.24 -10.50 5.50 -19.99 -0.11 -10.61 16 15 C -0.04 -1.34 7.43 22.52 0.17 -1.17 16 16 C -0.20 -5.05 10.02 22.25 0.22 -4.82 16 17 C -0.04 -1.28 10.03 22.30 0.22 -1.05 16 18 C -0.26 -10.92 9.13 22.36 0.20 -10.72 16 19 C 0.15 7.72 6.63 22.91 0.15 7.87 16 20 O -0.20 -12.68 8.23 -1.45 -0.01 -12.69 16 21 C -0.42 -25.79 9.45 67.93 0.64 -25.15 16 22 H 0.11 5.78 5.29 -2.91 -0.02 5.76 16 23 C -0.02 -1.39 5.49 84.85 0.47 -0.93 16 24 N -0.91 -60.22 13.67 21.62 0.30 -59.93 16 25 Si 1.02 44.90 29.55 68.60 2.03 46.93 16 26 H -0.24 -9.67 7.11 99.48 0.71 -8.96 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 28 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 29 H 0.09 1.92 8.14 -2.39 -0.02 1.91 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.62 6.38 -2.39 -0.02 1.61 16 33 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.06 2.81 6.36 -2.38 -0.02 2.79 16 35 H 0.03 1.67 7.19 -2.39 -0.02 1.65 16 36 H 0.13 2.44 6.80 -2.39 -0.02 2.42 16 37 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.15 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 40 H 0.12 2.63 4.30 -2.39 -0.01 2.62 16 41 H 0.11 1.72 7.92 -2.39 -0.02 1.70 16 42 H 0.17 3.57 5.25 -2.91 -0.02 3.55 16 43 H 0.17 2.65 8.06 -2.91 -0.02 2.63 16 44 H 0.15 3.42 8.06 -2.91 -0.02 3.39 16 45 H 0.12 5.28 5.71 -2.91 -0.02 5.26 16 46 H 0.27 16.48 8.31 -92.70 -0.77 15.71 16 Total: -1.00 -92.36 365.20 3.72 -88.64 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 1.01 Total: 30.68 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 5.84 Total: -11.68 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -2.12 Total: -82.97 kcal Atomic # 8 Polarization: -68.55 SS G_CDS: -3.04 Total: -71.59 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -92.36 3.72 -88.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291454900.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.778 kcal (2) G-P(sol) polarization free energy of solvation -92.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds