Wall clock time and date at job start Tue Mar 31 2020 19:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34222 * 116.99867 * 2 1 4 4 O 1.20830 * 120.00323 * 359.72425 * 3 2 1 5 5 C 1.50706 * 120.00024 * 180.02562 * 3 2 1 6 6 H 1.08998 * 109.47012 * 59.71777 * 5 3 2 7 7 C 1.52998 * 109.47348 * 179.72254 * 5 3 2 8 8 N 1.46501 * 109.47225 * 295.00169 * 7 5 3 9 9 C 1.34774 * 119.99745 * 180.02562 * 8 7 5 10 10 O 1.21273 * 120.00289 * 359.97438 * 9 8 7 11 11 C 1.50703 * 119.99738 * 180.02562 * 9 8 7 12 12 C 1.53001 * 109.47066 * 180.02562 * 11 9 8 13 13 C 1.50703 * 109.47066 * 180.02562 * 12 11 9 14 14 H 1.08002 * 119.99986 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99847 * 180.02562 * 13 12 11 16 16 N 1.31510 * 119.99570 * 179.97438 * 15 13 12 17 17 Si 1.86801 * 119.99890 * 359.97438 * 15 13 12 18 18 H 1.48499 * 109.47052 * 90.00785 * 17 15 13 19 19 H 1.48502 * 109.46880 * 210.00381 * 17 15 13 20 20 H 1.48502 * 109.47211 * 330.00170 * 17 15 13 21 21 C 1.52998 * 109.46708 * 299.72383 * 5 3 2 22 22 C 1.50706 * 109.47226 * 64.99921 * 21 5 3 23 23 C 1.38262 * 119.94160 * 269.72199 * 22 21 5 24 24 C 1.38147 * 120.05106 * 179.72295 * 23 22 21 25 25 C 1.38733 * 119.94379 * 0.57541 * 24 23 22 26 26 O 1.35902 * 120.05189 * 179.67947 * 25 24 23 27 27 C 1.38731 * 119.88874 * 359.69932 * 25 24 23 28 28 C 1.38145 * 119.94469 * 0.02562 * 27 25 24 29 29 H 1.09001 * 109.47271 * 60.00074 * 1 2 3 30 30 H 1.09002 * 109.47225 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46864 * 300.00062 * 1 2 3 32 32 H 1.09004 * 109.46916 * 55.00165 * 7 5 3 33 33 H 1.08994 * 109.47150 * 174.99787 * 7 5 3 34 34 H 0.96997 * 119.99699 * 359.97438 * 8 7 5 35 35 H 1.09004 * 109.47038 * 299.99543 * 11 9 8 36 36 H 1.08994 * 109.47507 * 59.99458 * 11 9 8 37 37 H 1.09004 * 109.46714 * 299.99613 * 12 11 9 38 38 H 1.08994 * 109.47504 * 59.99328 * 12 11 9 39 39 H 0.97002 * 119.99986 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.47041 * 184.99421 * 21 5 3 41 41 H 1.08996 * 109.47547 * 304.99598 * 21 5 3 42 42 H 1.07998 * 119.97658 * 359.97438 * 23 22 21 43 43 H 1.08003 * 120.02823 * 180.24910 * 24 23 22 44 44 H 0.96690 * 114.00102 * 270.01802 * 26 25 24 45 45 H 1.08001 * 120.02294 * 179.97438 * 27 25 24 46 46 H 1.07997 * 119.96845 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1959 0.0000 4 8 1.4033 2.2093 -0.0050 5 6 3.5663 1.2749 -0.0006 6 1 3.9559 0.7766 -0.8883 7 6 4.0001 2.7420 -0.0074 8 7 3.5786 3.3701 -1.2621 9 6 3.8550 4.6691 -1.4915 10 8 4.4522 5.3182 -0.6592 11 6 3.4209 5.3153 -2.7819 12 6 3.8559 6.7821 -2.7893 13 6 3.4213 7.4285 -4.0794 14 1 2.8884 6.8507 -4.8202 15 6 3.7048 8.7571 -4.3145 16 7 3.3259 9.3210 -5.4406 17 14 4.6271 9.7562 -3.0336 18 1 6.0872 9.6570 -3.2857 19 1 4.2058 11.1777 -3.1172 20 1 4.3214 9.2281 -1.6797 21 6 4.1135 0.5871 1.2518 22 6 3.7913 -0.8842 1.1983 23 6 2.6107 -1.3524 1.7446 24 6 2.3104 -2.6998 1.6918 25 6 3.2002 -3.5849 1.1004 26 8 2.9100 -4.9117 1.0530 27 6 4.3868 -3.1133 0.5580 28 6 4.6798 -1.7642 0.6083 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 3.5380 3.2615 0.8321 33 1 5.0849 2.8006 0.0817 34 1 3.1013 2.8508 -1.9279 35 1 3.8823 4.7956 -3.6217 36 1 2.3361 5.2572 -2.8704 37 1 3.3949 7.3020 -1.9495 38 1 4.9408 6.8398 -2.7010 39 1 3.5250 10.2558 -5.6059 40 1 5.1943 0.7208 1.2969 41 1 3.6556 1.0273 2.1375 42 1 1.9208 -0.6638 2.2095 43 1 1.3862 -3.0646 2.1151 44 1 3.2278 -5.4114 1.8174 45 1 5.0812 -3.8004 0.0975 46 1 5.6035 -1.3967 0.1866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291683283.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:25 Heat of formation + Delta-G solvation = -177.739939 kcal Electronic energy + Delta-G solvation = -28415.133292 eV Core-core repulsion = 24268.679425 eV Total energy + Delta-G solvation = -4146.453867 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.92312 -40.58603 -40.46713 -38.11148 -37.74550 -36.37991 -35.52802 -34.33798 -33.27014 -31.82271 -30.76749 -28.89535 -28.14757 -26.32365 -24.83480 -23.68665 -23.16044 -22.30449 -21.54429 -20.87805 -19.28772 -19.20360 -18.79436 -17.95911 -17.63006 -17.43933 -16.99135 -16.57454 -16.48687 -16.37488 -16.20943 -15.97142 -15.24522 -14.89346 -14.67627 -14.56311 -14.49870 -14.37009 -14.25520 -13.83122 -13.51889 -13.47348 -13.37575 -13.16320 -12.89311 -12.79049 -12.58429 -12.37081 -12.16187 -12.02866 -11.96751 -11.76666 -11.74120 -11.42018 -11.40602 -11.26022 -10.78311 -10.78140 -10.06631 -9.76631 -9.32026 -8.31654 -6.34756 0.34262 0.53239 1.15951 1.33402 1.35174 1.50966 1.69348 1.75433 2.22924 2.35350 2.78942 3.03753 3.31528 3.43169 3.71426 3.91391 4.01384 4.04231 4.12133 4.15442 4.18592 4.30899 4.33443 4.39528 4.44266 4.49167 4.54738 4.65227 4.73668 4.76324 4.88589 4.94560 4.99698 5.09784 5.19381 5.31663 5.40176 5.43874 5.44540 5.47890 5.59058 5.60926 5.73851 6.01656 6.23231 6.52986 6.71242 6.73051 6.92784 7.29588 7.30498 8.84063 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.025575 B = 0.002070 C = 0.002014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.554042 B =13524.988656 C =13897.619970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.341 6.341 3 C 0.457 3.543 4 O -0.530 6.530 5 C -0.075 4.075 6 H 0.139 0.861 7 C 0.132 3.868 8 N -0.716 5.716 9 C 0.518 3.482 10 O -0.584 6.584 11 C -0.118 4.118 12 C 0.006 3.994 13 C -0.531 4.531 14 H 0.048 0.952 15 C 0.012 3.988 16 N -0.944 5.944 17 Si 0.941 3.059 18 H -0.265 1.265 19 H -0.278 1.278 20 H -0.263 1.263 21 C -0.064 4.064 22 C -0.102 4.102 23 C -0.069 4.069 24 C -0.157 4.157 25 C 0.095 3.905 26 O -0.516 6.516 27 C -0.160 4.160 28 C -0.093 4.093 29 H 0.056 0.944 30 H 0.123 0.877 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.097 0.903 34 H 0.409 0.591 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.007 0.993 38 H 0.013 0.987 39 H 0.267 0.733 40 H 0.120 0.880 41 H 0.083 0.917 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.408 0.592 45 H 0.135 0.865 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.407 -33.411 18.101 38.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.256 6.256 3 C 0.301 3.699 4 O -0.419 6.419 5 C -0.094 4.094 6 H 0.157 0.843 7 C 0.008 3.992 8 N -0.368 5.368 9 C 0.306 3.694 10 O -0.464 6.464 11 C -0.158 4.158 12 C -0.032 4.032 13 C -0.569 4.569 14 H 0.066 0.934 15 C -0.186 4.186 16 N -0.584 5.584 17 Si 0.765 3.235 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.187 1.187 21 C -0.101 4.101 22 C -0.102 4.102 23 C -0.087 4.087 24 C -0.175 4.175 25 C 0.051 3.949 26 O -0.329 6.329 27 C -0.178 4.178 28 C -0.111 4.111 29 H 0.074 0.926 30 H 0.141 0.859 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.244 0.756 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.026 0.974 38 H 0.032 0.968 39 H 0.076 0.924 40 H 0.138 0.862 41 H 0.101 0.899 42 H 0.138 0.862 43 H 0.149 0.851 44 H 0.266 0.734 45 H 0.153 0.847 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.327 -32.388 18.084 37.097 hybrid contribution -0.366 0.509 0.221 0.665 sum -0.039 -31.879 18.306 36.761 Atomic orbital electron populations 1.23437 0.75955 1.04985 1.02280 1.86716 1.23816 1.31911 1.83182 1.24078 0.92576 0.81426 0.71809 1.90769 1.67796 1.37434 1.45929 1.21481 0.86875 0.96613 1.04463 0.84296 1.21308 1.00954 0.90123 0.86769 1.45799 1.59536 1.10666 1.20823 1.21036 0.77741 0.81825 0.88776 1.90626 1.43137 1.63969 1.48656 1.21492 1.02917 0.96880 0.94529 1.19211 0.96166 0.92784 0.95011 1.21437 1.36615 0.96117 1.02690 0.93360 1.25836 0.96395 0.99102 0.97242 1.70028 1.48766 1.13414 1.26198 0.85792 0.79564 0.77807 0.80341 1.18990 1.20346 1.18711 1.20512 1.04179 0.90443 0.95004 1.19748 0.95307 0.95058 1.00070 1.20871 0.95690 0.94601 0.97538 1.21448 1.00661 0.93743 1.01651 1.18672 0.93695 0.83950 0.98632 1.84774 1.81606 1.17140 1.49398 1.21567 0.96924 0.96931 1.02422 1.21152 0.99870 0.92172 0.97864 0.92556 0.85895 0.92052 0.92528 0.88525 0.75590 0.87750 0.88911 0.97445 0.96846 0.92361 0.86226 0.89868 0.86176 0.85067 0.73379 0.84699 0.83521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.34 -5.36 6.49 -51.34 -0.33 -5.69 16 3 C 0.46 8.56 6.82 71.24 0.49 9.04 16 4 O -0.53 -14.22 15.04 21.95 0.33 -13.89 16 5 C -0.08 -1.01 2.36 -11.54 -0.03 -1.04 16 6 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 7 C 0.13 2.72 4.63 86.38 0.40 3.11 16 8 N -0.72 -18.82 4.81 -463.07 -2.23 -21.04 16 9 C 0.52 19.09 7.83 87.66 0.69 19.77 16 10 O -0.58 -26.13 15.98 -3.01 -0.05 -26.18 16 11 C -0.12 -4.72 5.64 29.85 0.17 -4.55 16 12 C 0.01 0.32 3.33 29.85 0.10 0.42 16 13 C -0.53 -31.46 9.66 25.60 0.25 -31.21 16 14 H 0.05 3.01 7.99 -2.91 -0.02 2.99 16 15 C 0.01 0.72 5.47 84.66 0.46 1.18 16 16 N -0.94 -60.02 13.96 21.45 0.30 -59.72 16 17 Si 0.94 47.59 27.47 68.60 1.88 49.47 16 18 H -0.26 -12.82 7.11 99.48 0.71 -12.12 16 19 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 20 H -0.26 -13.29 6.54 99.48 0.65 -12.64 16 21 C -0.06 -0.60 4.83 29.85 0.14 -0.45 16 22 C -0.10 -1.10 4.54 -19.85 -0.09 -1.19 16 23 C -0.07 -0.83 6.89 22.25 0.15 -0.68 16 24 C -0.16 -1.93 9.99 22.37 0.22 -1.71 16 25 C 0.09 1.23 6.71 22.51 0.15 1.38 16 26 O -0.52 -6.08 13.50 -92.44 -1.25 -7.33 16 27 C -0.16 -1.86 9.99 22.37 0.22 -1.63 16 28 C -0.09 -0.92 9.69 22.25 0.22 -0.70 16 29 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 30 H 0.12 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 1.43 7.96 -2.38 -0.02 1.41 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.41 8.89 8.16 -92.71 -0.76 8.13 16 35 H 0.10 3.71 8.14 -2.38 -0.02 3.69 16 36 H 0.09 3.54 8.14 -2.39 -0.02 3.52 16 37 H 0.01 0.39 7.16 -2.38 -0.02 0.37 16 38 H 0.01 0.69 7.53 -2.39 -0.02 0.67 16 39 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 40 H 0.12 0.62 8.08 -2.39 -0.02 0.60 16 41 H 0.08 0.81 8.08 -2.39 -0.02 0.80 16 42 H 0.12 1.38 7.61 -2.91 -0.02 1.36 16 43 H 0.13 1.33 8.06 -2.91 -0.02 1.30 16 44 H 0.41 0.88 9.06 -74.06 -0.67 0.21 16 45 H 0.14 1.25 8.06 -2.91 -0.02 1.22 16 46 H 0.15 0.83 8.06 -2.91 -0.02 0.80 16 Total: -1.00 -83.68 388.01 2.92 -80.76 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -0.48 Total: 10.31 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 4.74 Total: -6.70 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -1.93 Total: -80.76 kcal Atomic # 8 Polarization: -51.78 SS G_CDS: -1.30 Total: -53.08 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.88 Total: 49.47 kcal Total: -83.68 2.92 -80.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291683283.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.978 kcal (2) G-P(sol) polarization free energy of solvation -83.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds