Wall clock time and date at job start Tue Mar 31 2020 19:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 120.00061 * 2 1 4 4 N 1.46502 * 109.46818 * 126.18184 * 3 2 1 5 5 C 1.46500 * 120.00129 * 277.53153 * 4 3 2 6 6 C 1.50694 * 109.47340 * 269.99998 * 5 4 3 7 7 H 1.07998 * 120.00020 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99935 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99890 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99936 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47021 * 60.00146 * 10 8 6 12 12 H 1.48493 * 109.47427 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47100 * 300.00532 * 10 8 6 14 14 C 1.34777 * 119.99972 * 97.53328 * 4 3 2 15 15 O 1.21585 * 120.00324 * 185.73410 * 14 4 3 16 16 C 1.47613 * 119.99905 * 5.73628 * 14 4 3 17 17 C 1.39698 * 120.05439 * 311.38524 * 16 14 4 18 18 C 1.38236 * 119.94501 * 180.32266 * 17 16 14 19 19 O 1.36004 * 119.97278 * 179.97438 * 18 17 16 20 20 C 1.42890 * 116.99981 * 359.95339 * 19 18 17 21 21 C 1.39227 * 120.05304 * 359.93437 * 18 17 16 22 22 O 1.35899 * 119.94401 * 180.02562 * 21 18 17 23 23 C 1.42898 * 116.99769 * 270.01986 * 22 21 18 24 24 C 1.39236 * 120.11556 * 0.04191 * 21 18 17 25 25 O 1.36004 * 119.97397 * 179.97438 * 24 21 18 26 26 C 1.42900 * 117.00148 * 180.02562 * 25 24 21 27 27 C 1.38229 * 120.05637 * 0.02562 * 24 21 18 28 28 H 1.08001 * 120.00230 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.99936 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.99509 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47132 * 6.18479 * 3 2 1 32 32 H 1.08999 * 109.47151 * 246.17763 * 3 2 1 33 33 H 1.08996 * 109.46993 * 30.00364 * 5 4 3 34 34 H 1.09001 * 109.46819 * 149.99867 * 5 4 3 35 35 H 0.97005 * 119.99797 * 179.97438 * 9 8 6 36 36 H 1.08003 * 120.03013 * 0.25266 * 17 16 14 37 37 H 1.09009 * 109.47291 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47736 * 299.99692 * 20 19 18 39 39 H 1.09000 * 109.47380 * 60.00435 * 20 19 18 40 40 H 1.09001 * 109.47720 * 179.97438 * 23 22 21 41 41 H 1.09010 * 109.47275 * 300.00174 * 23 22 21 42 42 H 1.09000 * 109.47517 * 59.99542 * 23 22 21 43 43 H 1.08997 * 109.46779 * 59.99934 * 26 25 24 44 44 H 1.08992 * 109.46966 * 179.97438 * 26 25 24 45 45 H 1.09002 * 109.46854 * 299.99746 * 26 25 24 46 46 H 1.07993 * 120.02782 * 179.97438 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0138 1.3202 1.1149 5 6 2.5597 1.6832 2.4596 6 6 2.6978 3.1715 2.6518 7 1 3.0847 3.7856 1.8521 8 6 2.3293 3.7492 3.8482 9 7 1.8577 3.0014 4.8218 10 14 2.4998 5.5941 4.0861 11 1 1.6728 6.3021 3.0760 12 1 2.0397 5.9621 5.4492 13 1 3.9231 5.9849 3.9223 14 6 4.3058 1.0001 0.9034 15 8 5.0718 0.9109 1.8435 16 6 4.7910 0.7580 -0.4695 17 6 4.0834 -0.0933 -1.3217 18 6 4.5435 -0.3237 -2.6047 19 8 3.8553 -1.1528 -3.4346 20 6 2.6670 -1.7516 -2.9141 21 6 5.7103 0.2929 -3.0483 22 8 6.1603 0.0653 -4.3102 23 6 7.0575 -1.0322 -4.4909 24 6 6.4171 1.1422 -2.2011 25 8 7.5569 1.7427 -2.6372 26 6 8.2317 2.6010 -1.7153 27 6 5.9621 1.3748 -0.9167 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3604 2.1305 0.1107 32 1 2.6046 1.4122 -0.9401 33 1 1.5150 1.3967 2.5800 34 1 3.1668 1.1633 3.2007 35 1 1.5987 3.4079 5.6636 36 1 3.1783 -0.5719 -0.9780 37 1 2.2169 -2.3880 -3.6762 38 1 2.9161 -2.3532 -2.0399 39 1 1.9616 -0.9711 -2.6290 40 1 7.3385 -1.1027 -5.5417 41 1 7.9503 -0.8751 -3.8854 42 1 6.5680 -1.9562 -4.1833 43 1 8.5204 2.0306 -0.8325 44 1 9.1227 3.0135 -2.1884 45 1 7.5667 3.4132 -1.4216 46 1 6.5109 2.0333 -0.2599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000292313353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:25 Heat of formation + Delta-G solvation = -78.690879 kcal Electronic energy + Delta-G solvation = -30058.971548 eV Core-core repulsion = 25916.812770 eV Total energy + Delta-G solvation = -4142.158778 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.01052 -39.23451 -39.08184 -37.79594 -35.97657 -35.85347 -33.28256 -32.16965 -30.64585 -29.79342 -28.03939 -27.70722 -27.21852 -26.55888 -25.54996 -23.68881 -22.24657 -21.95027 -20.36598 -19.38382 -18.17785 -17.43497 -17.27843 -16.69963 -16.52531 -16.35020 -16.10148 -15.64099 -15.54369 -15.09303 -14.95161 -14.64052 -14.54811 -14.38512 -14.07137 -13.65694 -13.29456 -12.94241 -12.65486 -12.55234 -12.17925 -12.02790 -11.93713 -11.77480 -11.65915 -11.62551 -11.33146 -11.27967 -11.15896 -10.93220 -10.71937 -10.56056 -10.23431 -10.01853 -9.73180 -9.29225 -9.17668 -8.47941 -8.30161 -8.23014 -7.79860 -6.09002 -4.14366 0.86005 1.28879 2.33274 2.69440 3.05153 3.28888 3.33473 3.35568 3.46352 3.59525 3.76157 3.98146 4.39927 4.70868 4.85711 4.91102 4.99149 5.02886 5.04666 5.13221 5.17104 5.20168 5.25052 5.27172 5.29383 5.31770 5.33778 5.36395 5.45308 5.59384 5.59900 5.80925 5.94091 6.06779 6.13917 6.22069 6.30521 6.67842 6.80211 6.91006 7.00898 7.12809 7.37245 7.44767 7.60357 7.86748 8.16934 8.25793 8.78242 8.94576 9.50738 10.99097 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012285 B = 0.003948 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.682362 B = 7090.149209 C = 8787.954394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.176 4.176 3 C 0.125 3.875 4 N -0.581 5.581 5 C 0.247 3.753 6 C -0.531 4.531 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.898 3.102 11 H -0.276 1.276 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.547 3.453 15 O -0.529 6.529 16 C -0.036 4.036 17 C -0.216 4.216 18 C 0.143 3.857 19 O -0.302 6.302 20 C 0.021 3.979 21 C 0.037 3.963 22 O -0.312 6.312 23 C 0.035 3.965 24 C 0.144 3.856 25 O -0.303 6.303 26 C 0.022 3.978 27 C -0.185 4.185 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.036 0.964 34 H 0.046 0.954 35 H 0.264 0.736 36 H 0.151 0.849 37 H 0.102 0.898 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.044 0.956 42 H 0.044 0.956 43 H 0.060 0.940 44 H 0.102 0.898 45 H 0.061 0.939 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.335 -8.367 -17.628 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.195 4.195 3 C 0.001 3.999 4 N -0.311 5.311 5 C 0.128 3.872 6 C -0.570 4.570 7 H 0.076 0.924 8 C -0.139 4.139 9 N -0.531 5.531 10 Si 0.726 3.274 11 H -0.202 1.202 12 H -0.211 1.211 13 H -0.202 1.202 14 C 0.333 3.667 15 O -0.407 6.407 16 C -0.040 4.040 17 C -0.235 4.235 18 C 0.097 3.903 19 O -0.215 6.215 20 C -0.074 4.074 21 C -0.009 4.009 22 O -0.228 6.228 23 C -0.059 4.059 24 C 0.098 3.902 25 O -0.216 6.216 26 C -0.073 4.073 27 C -0.205 4.205 28 H 0.115 0.885 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.106 0.894 32 H 0.102 0.898 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.168 0.832 37 H 0.120 0.880 38 H 0.074 0.926 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.062 0.938 43 H 0.079 0.921 44 H 0.120 0.880 45 H 0.079 0.921 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.750 -8.356 -17.441 19.914 hybrid contribution -0.098 0.907 0.896 1.279 sum 4.652 -7.450 -16.545 18.732 Atomic orbital electron populations 1.23857 0.95673 1.02029 0.99470 1.23401 0.96422 0.98749 1.00939 1.20823 0.92926 0.95394 0.90713 1.48163 1.06578 1.64839 1.11543 1.19338 0.95576 0.95776 0.76511 1.21386 1.43450 0.92431 0.99726 0.92414 1.24918 0.94964 0.98450 0.95580 1.69923 1.43016 1.35547 1.04662 0.86559 0.78622 0.85030 0.77230 1.20182 1.21123 1.20165 1.18079 0.82960 0.78318 0.87338 1.90784 1.55069 1.51653 1.43188 1.19833 0.94039 0.95679 0.94418 1.21653 1.03672 1.05203 0.92985 1.18769 0.91769 0.90793 0.89013 1.86128 1.37936 1.58193 1.39244 1.23202 0.85365 0.97956 1.00869 1.17037 0.94269 1.02645 0.86937 1.86102 1.63669 1.50367 1.22665 1.22972 0.92244 0.88507 1.02194 1.18782 0.86652 0.93535 0.91270 1.86119 1.35047 1.59270 1.41185 1.23179 0.97038 0.93297 0.93791 1.21104 0.98628 1.05669 0.95057 0.88542 0.88019 0.87743 0.89417 0.89752 0.94602 0.93577 0.92591 0.83204 0.87977 0.92551 0.91910 0.89146 0.93734 0.93764 0.92132 0.87984 0.92060 0.83857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.08 14.32 29.01 0.42 -1.67 16 2 C -0.18 -2.40 8.45 -36.03 -0.30 -2.71 16 3 C 0.13 2.06 5.34 -5.19 -0.03 2.03 16 4 N -0.58 -12.29 2.45 -177.64 -0.43 -12.72 16 5 C 0.25 6.35 5.21 -5.20 -0.03 6.33 16 6 C -0.53 -14.81 9.39 -34.44 -0.32 -15.13 16 7 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 8 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 9 N -0.89 -26.14 13.29 55.43 0.74 -25.41 16 10 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 C 0.55 11.70 7.22 -12.43 -0.09 11.61 16 15 O -0.53 -13.42 16.57 5.29 0.09 -13.33 16 16 C -0.04 -0.63 4.97 -104.98 -0.52 -1.15 16 17 C -0.22 -3.16 6.45 -39.04 -0.25 -3.42 16 18 C 0.14 2.04 6.69 -39.21 -0.26 1.78 16 19 O -0.30 -3.82 10.27 -34.49 -0.35 -4.17 16 20 C 0.02 0.19 9.81 101.05 0.99 1.18 16 21 C 0.04 0.55 5.75 -38.84 -0.22 0.33 16 22 O -0.31 -4.53 9.96 -44.81 -0.45 -4.98 16 23 C 0.04 0.38 11.13 101.05 1.12 1.51 16 24 C 0.14 2.17 6.69 -39.21 -0.26 1.90 16 25 O -0.30 -4.14 10.27 -34.49 -0.35 -4.49 16 26 C 0.02 0.22 9.81 101.05 0.99 1.21 16 27 C -0.18 -2.98 8.70 -39.04 -0.34 -3.32 16 28 H 0.10 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.10 1.22 7.84 -52.49 -0.41 0.81 16 30 H 0.10 1.32 6.54 -52.48 -0.34 0.98 16 31 H 0.09 1.48 7.78 -51.93 -0.40 1.08 16 32 H 0.08 1.27 5.23 -51.93 -0.27 1.00 16 33 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 34 H 0.05 1.34 7.35 -51.93 -0.38 0.96 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.15 1.97 2.35 -52.48 -0.12 1.85 16 37 H 0.10 0.64 8.14 -51.92 -0.42 0.22 16 38 H 0.06 0.46 7.66 -51.93 -0.40 0.06 16 39 H 0.06 0.53 7.56 -51.93 -0.39 0.14 16 40 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.04 0.47 8.14 -51.92 -0.42 0.04 16 42 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.60 7.66 -51.93 -0.40 0.20 16 44 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 46 H 0.14 2.27 6.28 -52.49 -0.33 1.94 16 LS Contribution 385.93 15.07 5.82 5.82 Total: -1.00 -34.24 385.93 -5.53 -39.77 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.35 Total: 0.84 kcal Atomic # 6 Polarization: 1.38 SS G_CDS: 0.79 Total: 2.17 kcal Atomic # 7 Polarization: -38.43 SS G_CDS: 0.30 Total: -38.13 kcal Atomic # 8 Polarization: -25.91 SS G_CDS: -1.07 Total: -26.97 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.24 -5.53 -39.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292313353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.919 kcal (2) G-P(sol) polarization free energy of solvation -34.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds