Wall clock time and date at job start Tue Mar 31 2020 19:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50695 * 120.00061 * 2 1 4 4 N 1.46502 * 109.46818 * 126.18184 * 3 2 1 5 5 C 1.46500 * 120.00129 * 277.53153 * 4 3 2 6 6 C 1.50694 * 109.47340 * 269.99998 * 5 4 3 7 7 H 1.07998 * 120.00020 * 0.02562 * 6 5 4 8 8 C 1.37878 * 119.99935 * 179.97438 * 6 5 4 9 9 N 1.31509 * 119.99890 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99936 * 180.02562 * 8 6 5 11 11 H 1.48505 * 109.47021 * 60.00146 * 10 8 6 12 12 H 1.48493 * 109.47427 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47100 * 300.00532 * 10 8 6 14 14 C 1.34777 * 119.99972 * 97.53328 * 4 3 2 15 15 O 1.21585 * 120.00324 * 185.73410 * 14 4 3 16 16 C 1.47613 * 119.99905 * 5.73628 * 14 4 3 17 17 C 1.39698 * 120.05439 * 311.38524 * 16 14 4 18 18 C 1.38236 * 119.94501 * 180.32266 * 17 16 14 19 19 O 1.36004 * 119.97278 * 179.97438 * 18 17 16 20 20 C 1.42890 * 116.99981 * 359.95339 * 19 18 17 21 21 C 1.39227 * 120.05304 * 359.93437 * 18 17 16 22 22 O 1.35899 * 119.94401 * 180.02562 * 21 18 17 23 23 C 1.42898 * 116.99769 * 270.01986 * 22 21 18 24 24 C 1.39236 * 120.11556 * 0.04191 * 21 18 17 25 25 O 1.36004 * 119.97397 * 179.97438 * 24 21 18 26 26 C 1.42900 * 117.00148 * 180.02562 * 25 24 21 27 27 C 1.38229 * 120.05637 * 0.02562 * 24 21 18 28 28 H 1.08001 * 120.00230 * 179.97438 * 1 2 3 29 29 H 1.07997 * 119.99936 * 0.02562 * 1 2 3 30 30 H 1.08005 * 119.99509 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47132 * 6.18479 * 3 2 1 32 32 H 1.08999 * 109.47151 * 246.17763 * 3 2 1 33 33 H 1.08996 * 109.46993 * 30.00364 * 5 4 3 34 34 H 1.09001 * 109.46819 * 149.99867 * 5 4 3 35 35 H 0.97005 * 119.99797 * 179.97438 * 9 8 6 36 36 H 1.08003 * 120.03013 * 0.25266 * 17 16 14 37 37 H 1.09009 * 109.47291 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47736 * 299.99692 * 20 19 18 39 39 H 1.09000 * 109.47380 * 60.00435 * 20 19 18 40 40 H 1.09001 * 109.47720 * 179.97438 * 23 22 21 41 41 H 1.09010 * 109.47275 * 300.00174 * 23 22 21 42 42 H 1.09000 * 109.47517 * 59.99542 * 23 22 21 43 43 H 1.08997 * 109.46779 * 59.99934 * 26 25 24 44 44 H 1.08992 * 109.46966 * 179.97438 * 26 25 24 45 45 H 1.09002 * 109.46854 * 299.99746 * 26 25 24 46 46 H 1.07993 * 120.02782 * 179.97438 * 27 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0138 1.3202 1.1149 5 6 2.5597 1.6832 2.4596 6 6 2.6978 3.1715 2.6518 7 1 3.0847 3.7856 1.8521 8 6 2.3293 3.7492 3.8482 9 7 1.8577 3.0014 4.8218 10 14 2.4998 5.5941 4.0861 11 1 1.6728 6.3021 3.0760 12 1 2.0397 5.9621 5.4492 13 1 3.9231 5.9849 3.9223 14 6 4.3058 1.0001 0.9034 15 8 5.0718 0.9109 1.8435 16 6 4.7910 0.7580 -0.4695 17 6 4.0834 -0.0933 -1.3217 18 6 4.5435 -0.3237 -2.6047 19 8 3.8553 -1.1528 -3.4346 20 6 2.6670 -1.7516 -2.9141 21 6 5.7103 0.2929 -3.0483 22 8 6.1603 0.0653 -4.3102 23 6 7.0575 -1.0322 -4.4909 24 6 6.4171 1.1422 -2.2011 25 8 7.5569 1.7427 -2.6372 26 6 8.2317 2.6010 -1.7153 27 6 5.9621 1.3748 -0.9167 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8499 -0.9354 -0.0004 31 1 1.3604 2.1305 0.1107 32 1 2.6046 1.4122 -0.9401 33 1 1.5150 1.3967 2.5800 34 1 3.1668 1.1633 3.2007 35 1 1.5987 3.4079 5.6636 36 1 3.1783 -0.5719 -0.9780 37 1 2.2169 -2.3880 -3.6762 38 1 2.9161 -2.3532 -2.0399 39 1 1.9616 -0.9711 -2.6290 40 1 7.3385 -1.1027 -5.5417 41 1 7.9503 -0.8751 -3.8854 42 1 6.5680 -1.9562 -4.1833 43 1 8.5204 2.0306 -0.8325 44 1 9.1227 3.0135 -2.1884 45 1 7.5667 3.4132 -1.4216 46 1 6.5109 2.0333 -0.2599 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292313353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:24 Heat of formation + Delta-G solvation = -100.514659 kcal Electronic energy + Delta-G solvation = -30059.917898 eV Core-core repulsion = 25916.812770 eV Total energy + Delta-G solvation = -4143.105128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.18733 -40.73961 -40.10448 -38.82651 -37.41653 -37.18739 -35.14007 -33.77494 -31.88999 -30.92059 -29.61357 -28.78620 -28.05650 -27.68569 -26.96355 -25.38335 -23.69559 -23.07959 -21.61521 -20.62019 -19.46028 -18.73951 -18.56850 -18.39885 -17.76435 -17.51133 -17.33148 -17.13219 -16.53120 -16.39737 -16.14196 -15.96725 -15.92634 -15.56911 -15.37954 -14.84761 -14.53251 -14.32111 -14.01720 -13.97516 -13.53248 -13.33910 -13.16800 -13.03929 -12.94377 -12.80388 -12.60402 -12.54334 -12.49430 -12.27924 -12.25343 -12.22304 -11.78498 -11.67873 -11.02914 -10.88833 -10.65528 -10.38639 -9.62797 -9.40704 -9.36511 -8.24463 -6.39334 -0.37969 0.13802 1.25864 1.36510 1.40111 1.47228 1.58479 1.72715 2.14576 2.35031 2.40412 2.59658 2.77670 3.05747 3.36175 3.74881 3.82756 3.90189 4.02668 4.12077 4.17706 4.25361 4.31338 4.32507 4.37002 4.41533 4.49549 4.51281 4.61313 4.68080 4.75671 4.79536 4.80394 4.92675 4.96131 5.02473 5.08403 5.11739 5.19595 5.44776 5.64690 5.71497 5.88372 5.90721 6.02406 6.12470 6.54398 6.55901 6.68739 7.14309 7.33460 8.82895 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012285 B = 0.003948 C = 0.003185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.682362 B = 7090.149209 C = 8787.954394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.197 4.197 3 C 0.123 3.877 4 N -0.583 5.583 5 C 0.264 3.736 6 C -0.549 4.549 7 H 0.053 0.947 8 C 0.013 3.987 9 N -0.925 5.925 10 Si 0.965 3.035 11 H -0.261 1.261 12 H -0.277 1.277 13 H -0.277 1.277 14 C 0.544 3.456 15 O -0.583 6.583 16 C -0.053 4.053 17 C -0.204 4.204 18 C 0.150 3.850 19 O -0.307 6.307 20 C 0.009 3.991 21 C 0.034 3.966 22 O -0.327 6.327 23 C 0.031 3.969 24 C 0.145 3.855 25 O -0.309 6.309 26 C 0.015 3.985 27 C -0.192 4.192 28 H 0.125 0.875 29 H 0.101 0.899 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.029 0.971 34 H 0.002 0.998 35 H 0.268 0.732 36 H 0.165 0.835 37 H 0.131 0.869 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.116 0.884 41 H 0.045 0.955 42 H 0.049 0.951 43 H 0.060 0.940 44 H 0.134 0.866 45 H 0.059 0.941 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.679 -8.538 -19.954 22.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.216 4.216 3 C 0.002 3.998 4 N -0.312 5.312 5 C 0.144 3.856 6 C -0.587 4.587 7 H 0.072 0.928 8 C -0.187 4.187 9 N -0.564 5.564 10 Si 0.790 3.210 11 H -0.185 1.185 12 H -0.202 1.202 13 H -0.202 1.202 14 C 0.332 3.668 15 O -0.464 6.464 16 C -0.057 4.057 17 C -0.223 4.223 18 C 0.103 3.897 19 O -0.220 6.220 20 C -0.085 4.085 21 C -0.012 4.012 22 O -0.243 6.243 23 C -0.063 4.063 24 C 0.098 3.902 25 O -0.222 6.222 26 C -0.079 4.079 27 C -0.212 4.212 28 H 0.143 0.857 29 H 0.119 0.881 30 H 0.135 0.865 31 H 0.098 0.902 32 H 0.117 0.883 33 H 0.047 0.953 34 H 0.020 0.980 35 H 0.077 0.923 36 H 0.182 0.818 37 H 0.149 0.851 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.134 0.866 41 H 0.064 0.936 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.152 0.848 45 H 0.077 0.923 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 4.064 -8.539 -19.820 21.960 hybrid contribution 0.084 0.879 1.524 1.762 sum 4.149 -7.659 -18.296 20.264 Atomic orbital electron populations 1.24120 0.95083 1.03400 0.96226 1.23241 0.96950 0.97589 1.03800 1.21035 0.92235 0.97086 0.89494 1.48123 1.07622 1.64331 1.11129 1.18785 0.94123 0.94468 0.78247 1.21655 1.43646 0.93421 1.00025 0.92841 1.25805 0.94348 1.03382 0.95132 1.70037 1.43606 1.37615 1.05142 0.85501 0.78586 0.79163 0.77793 1.18541 1.20233 1.20236 1.18670 0.82414 0.77088 0.88583 1.90736 1.56336 1.54090 1.45288 1.19456 0.95420 0.98188 0.92607 1.21660 1.03650 1.04235 0.92771 1.18715 0.91597 0.90689 0.88741 1.86143 1.39023 1.57645 1.39186 1.23564 0.84118 0.98455 1.02360 1.17253 0.94493 1.02307 0.87125 1.86058 1.64402 1.51767 1.22122 1.23194 0.91606 0.87542 1.03959 1.18759 0.87152 0.93603 0.90668 1.86117 1.34502 1.59531 1.42077 1.23443 0.97785 0.92772 0.93913 1.21058 0.98412 1.05967 0.95737 0.85664 0.88096 0.86549 0.90185 0.88295 0.95276 0.97986 0.92289 0.81781 0.85057 0.91827 0.91337 0.86552 0.93642 0.93251 0.92135 0.84834 0.92265 0.84427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 14.32 67.78 0.97 -2.31 16 2 C -0.20 -5.11 8.45 25.65 0.22 -4.89 16 3 C 0.12 4.05 5.34 85.63 0.46 4.51 16 4 N -0.58 -25.56 2.45 -834.20 -2.04 -27.60 16 5 C 0.26 14.28 5.21 85.63 0.45 14.72 16 6 C -0.55 -31.55 9.39 25.60 0.24 -31.31 16 7 H 0.05 3.04 7.81 -2.91 -0.02 3.02 16 8 C 0.01 0.74 5.46 84.66 0.46 1.20 16 9 N -0.92 -55.32 13.29 21.45 0.28 -55.04 16 10 Si 0.97 44.43 29.54 68.60 2.03 46.45 16 11 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 13 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 14 C 0.54 24.35 7.22 86.72 0.63 24.97 16 15 O -0.58 -31.45 16.57 -3.98 -0.07 -31.51 16 16 C -0.05 -1.88 4.97 -20.09 -0.10 -1.98 16 17 C -0.20 -5.82 6.45 22.62 0.15 -5.68 16 18 C 0.15 4.04 6.69 22.51 0.15 4.20 16 19 O -0.31 -7.01 10.27 -79.50 -0.82 -7.82 16 20 C 0.01 0.13 9.81 113.37 1.11 1.24 16 21 C 0.03 0.98 5.75 22.75 0.13 1.11 16 22 O -0.33 -8.92 9.96 -68.14 -0.68 -9.60 16 23 C 0.03 0.60 11.13 113.37 1.26 1.86 16 24 C 0.15 4.31 6.69 22.51 0.15 4.46 16 25 O -0.31 -8.20 10.27 -79.51 -0.82 -9.01 16 26 C 0.01 0.30 9.81 113.37 1.11 1.41 16 27 C -0.19 -6.34 8.70 22.62 0.20 -6.14 16 28 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 29 H 0.10 2.22 7.84 -2.91 -0.02 2.20 16 30 H 0.12 2.74 6.54 -2.91 -0.02 2.72 16 31 H 0.08 2.72 7.78 -2.39 -0.02 2.70 16 32 H 0.10 2.93 5.23 -2.39 -0.01 2.92 16 33 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 34 H 0.00 0.13 7.35 -2.39 -0.02 0.11 16 35 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 36 H 0.17 4.10 2.35 -2.91 -0.01 4.10 16 37 H 0.13 1.15 8.14 -2.38 -0.02 1.14 16 38 H 0.06 0.86 7.66 -2.39 -0.02 0.84 16 39 H 0.07 0.95 7.56 -2.39 -0.02 0.93 16 40 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 42 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.06 1.20 7.66 -2.39 -0.02 1.18 16 44 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.06 1.20 7.66 -2.39 -0.02 1.18 16 46 H 0.14 4.58 6.28 -2.91 -0.02 4.56 16 Total: -1.00 -76.88 385.93 6.47 -70.40 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 1.00 Total: 16.34 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 7.58 Total: 7.39 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -1.76 Total: -82.64 kcal Atomic # 8 Polarization: -55.57 SS G_CDS: -2.38 Total: -57.95 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.45 kcal Total: -76.88 6.47 -70.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292313353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.110 kcal (2) G-P(sol) polarization free energy of solvation -76.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds