Wall clock time and date at job start Tue Mar 31 2020 19:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99920 * 2 1 4 4 N 1.46500 * 109.46832 * 125.00154 * 3 2 1 5 5 C 1.46498 * 119.99970 * 269.99871 * 4 3 2 6 6 C 1.50703 * 109.47427 * 270.00072 * 5 4 3 7 7 H 1.08003 * 119.99601 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00277 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00187 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99883 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47201 * 90.00012 * 10 8 6 12 12 H 1.48502 * 109.47251 * 209.99922 * 10 8 6 13 13 H 1.48502 * 109.47453 * 329.99993 * 10 8 6 14 14 C 1.34776 * 120.00158 * 90.00318 * 4 3 2 15 15 O 1.21278 * 120.00293 * 180.02562 * 14 4 3 16 16 C 1.50701 * 119.99962 * 359.97438 * 14 4 3 17 17 C 1.50699 * 109.47381 * 180.02562 * 16 14 4 18 18 C 1.38230 * 119.90938 * 89.99593 * 17 16 14 19 19 C 1.38668 * 120.08554 * 179.97438 * 18 17 16 20 20 O 1.36004 * 120.04270 * 180.02562 * 19 18 17 21 21 C 1.42903 * 116.99787 * 359.97438 * 20 19 18 22 22 C 1.38973 * 119.91448 * 0.27301 * 19 18 17 23 23 O 1.36091 * 120.09432 * 179.70444 * 22 19 18 24 24 C 1.38981 * 119.81674 * 359.45748 * 22 19 18 25 25 O 1.36000 * 120.04457 * 180.25020 * 24 22 19 26 26 C 1.42894 * 117.00190 * 180.29888 * 25 24 22 27 27 C 1.38222 * 119.90994 * 269.98210 * 17 16 14 28 28 H 1.08008 * 119.99897 * 179.97438 * 1 2 3 29 29 H 1.07990 * 120.00137 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.99764 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47110 * 5.00300 * 3 2 1 32 32 H 1.08997 * 109.47078 * 245.00078 * 3 2 1 33 33 H 1.09007 * 109.47389 * 30.00255 * 5 4 3 34 34 H 1.08997 * 109.47502 * 150.00232 * 5 4 3 35 35 H 0.97005 * 120.00506 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.46813 * 60.00023 * 16 14 4 37 37 H 1.09007 * 109.46889 * 300.00407 * 16 14 4 38 38 H 1.08003 * 119.95667 * 0.02562 * 18 17 16 39 39 H 1.09002 * 109.47382 * 60.00075 * 21 20 19 40 40 H 1.09001 * 109.46938 * 300.00061 * 21 20 19 41 41 H 1.09004 * 109.46926 * 180.02562 * 21 20 19 42 42 H 0.96702 * 114.00047 * 89.99966 * 23 22 19 43 43 H 1.08998 * 109.47675 * 59.99791 * 26 25 24 44 44 H 1.08999 * 109.47404 * 179.97438 * 26 25 24 45 45 H 1.09006 * 109.46944 * 299.99711 * 26 25 24 46 46 H 1.08003 * 119.95678 * 0.03513 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4248 6 6 2.8443 3.3435 2.4805 7 1 3.3033 3.8370 1.6366 8 6 2.5184 4.0666 3.6083 9 7 2.7670 5.3570 3.6567 10 14 1.7225 3.2134 5.0671 11 1 2.7777 2.7223 5.9894 12 1 0.8460 4.1738 5.7844 13 1 0.9112 2.0659 4.5873 14 6 4.2497 0.8661 0.9824 15 8 5.0197 0.8878 1.9191 16 6 4.6969 0.3174 -0.3480 17 6 6.1312 -0.1343 -0.2486 18 6 6.4204 -1.4335 0.1243 19 6 7.7389 -1.8532 0.2164 20 8 8.0224 -3.1319 0.5829 21 6 6.9127 -3.9888 0.8590 22 6 8.7702 -0.9640 -0.0613 23 8 10.0656 -1.3703 0.0338 24 6 8.4750 0.3398 -0.4414 25 8 9.4806 1.2123 -0.7191 26 6 9.1035 2.5378 -1.0971 27 6 7.1539 0.7517 -0.5309 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 1.4887 1.6965 2.5460 34 1 3.0989 1.3602 3.2260 35 1 2.5381 5.8657 4.4503 36 1 4.6120 1.0938 -1.1083 37 1 4.0677 -0.5296 -0.6217 38 1 5.6184 -2.1229 0.3434 39 1 6.2869 -4.0708 -0.0298 40 1 6.3270 -3.5722 1.6785 41 1 7.2776 -4.9770 1.1393 42 1 10.4247 -1.7349 -0.7868 43 1 8.5319 2.9969 -0.2906 44 1 9.9986 3.1292 -1.2898 45 1 8.4924 2.4985 -1.9989 46 1 6.9239 1.7661 -0.8216 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293719626.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:44 Heat of formation + Delta-G solvation = -94.902454 kcal Electronic energy + Delta-G solvation = -29331.343191 eV Core-core repulsion = 25188.481427 eV Total energy + Delta-G solvation = -4142.861764 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.79337 -39.28082 -39.00957 -37.11010 -36.56074 -35.67616 -33.25911 -32.20736 -31.65257 -29.64977 -28.86818 -27.89206 -27.58254 -26.04503 -25.45114 -22.75778 -22.00033 -21.49494 -20.10594 -18.89764 -18.41688 -17.57557 -17.14796 -16.91734 -16.54598 -16.51151 -16.09024 -15.75051 -15.54814 -15.15090 -14.86998 -14.66764 -14.44658 -14.05755 -13.78839 -13.66150 -13.23954 -13.00445 -12.64860 -12.50379 -12.36013 -12.20654 -11.80184 -11.79711 -11.70657 -11.58591 -11.57100 -11.16061 -11.09761 -10.96993 -10.61880 -10.59803 -10.52605 -10.17135 -9.59659 -9.33555 -9.09765 -8.61065 -8.14951 -8.13478 -7.79851 -6.11288 -4.10066 1.20812 1.39432 2.29563 2.78356 3.27067 3.27612 3.33539 3.35901 3.50968 3.59835 3.93971 4.19738 4.37743 4.60958 4.86062 4.94368 4.99800 5.04371 5.06162 5.11052 5.16107 5.19507 5.20461 5.22932 5.28598 5.36809 5.45807 5.48092 5.52913 5.59964 5.72060 5.88390 5.98454 6.07680 6.14737 6.36381 6.53430 6.64500 6.66503 6.78289 6.92098 7.14284 7.22162 7.30180 7.58514 7.82212 8.17524 8.43703 8.88451 8.93831 9.49238 11.02033 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010644 B = 0.003515 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.958227 B = 7964.242383 C = 8907.704319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.170 4.170 3 C 0.135 3.865 4 N -0.590 5.590 5 C 0.218 3.782 6 C -0.529 4.529 7 H 0.074 0.926 8 C 0.074 3.926 9 N -0.897 5.897 10 Si 0.874 3.126 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.266 1.266 14 C 0.510 3.490 15 O -0.527 6.527 16 C -0.107 4.107 17 C 0.017 3.983 18 C -0.216 4.216 19 C 0.141 3.859 20 O -0.306 6.306 21 C 0.026 3.974 22 C 0.033 3.967 23 O -0.473 6.473 24 C 0.143 3.857 25 O -0.306 6.306 26 C 0.024 3.976 27 C -0.212 4.212 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.030 0.970 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.131 0.869 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.100 0.900 42 H 0.376 0.624 43 H 0.062 0.938 44 H 0.101 0.899 45 H 0.056 0.944 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.452 -15.122 -14.584 21.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.190 4.190 3 C 0.011 3.989 4 N -0.321 5.321 5 C 0.097 3.903 6 C -0.567 4.567 7 H 0.092 0.908 8 C -0.129 4.129 9 N -0.536 5.536 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.296 3.704 15 O -0.403 6.403 16 C -0.147 4.147 17 C 0.016 3.984 18 C -0.235 4.235 19 C 0.094 3.906 20 O -0.219 6.219 21 C -0.070 4.070 22 C -0.013 4.013 23 O -0.280 6.280 24 C 0.097 3.903 25 O -0.219 6.219 26 C -0.071 4.071 27 C -0.231 4.231 28 H 0.113 0.887 29 H 0.118 0.882 30 H 0.122 0.878 31 H 0.108 0.892 32 H 0.096 0.904 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.120 0.880 37 H 0.117 0.883 38 H 0.149 0.851 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.118 0.882 42 H 0.229 0.771 43 H 0.081 0.919 44 H 0.119 0.881 45 H 0.075 0.925 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.194 -14.850 -13.313 20.609 hybrid contribution -1.011 -0.232 0.346 1.093 sum 4.184 -15.082 -12.967 20.326 Atomic orbital electron populations 1.23853 0.95867 1.01877 1.00378 1.23441 0.96418 0.99027 1.00087 1.20626 0.93190 0.95393 0.89684 1.47901 1.10616 1.60562 1.13002 1.19649 0.94856 0.95156 0.80602 1.21311 1.41211 0.91112 1.03098 0.90772 1.24835 0.95251 0.94704 0.98095 1.69887 1.47780 1.06602 1.29284 0.86878 0.79902 0.79685 0.83415 1.19896 1.21036 1.19046 1.20117 0.82185 0.78780 0.89344 1.90723 1.52228 1.55590 1.41737 1.20818 0.93305 1.02588 0.97976 1.18890 0.93962 0.92100 0.93475 1.20832 0.94664 0.97779 1.10228 1.18859 0.92236 0.83969 0.95501 1.86106 1.34503 1.18889 1.82420 1.23105 0.89375 0.93677 1.00800 1.16631 0.83560 0.89229 1.11881 1.84990 1.22450 1.82606 1.37964 1.18891 0.87299 0.89292 0.94836 1.86095 1.31574 1.21666 1.82569 1.23145 1.02698 0.81088 1.00181 1.20917 0.90757 1.01040 1.10420 0.88731 0.88175 0.87759 0.89157 0.90399 0.95227 0.94633 0.92545 0.87987 0.88271 0.85084 0.92612 0.92275 0.88211 0.77068 0.91918 0.88110 0.92537 0.84774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 14.32 29.01 0.42 -1.64 16 2 C -0.17 -2.10 9.74 -36.03 -0.35 -2.45 16 3 C 0.13 1.98 5.65 -5.20 -0.03 1.95 16 4 N -0.59 -11.58 2.44 -176.43 -0.43 -12.01 16 5 C 0.22 5.25 4.23 -5.19 -0.02 5.22 16 6 C -0.53 -14.98 9.94 -34.44 -0.34 -15.32 16 7 H 0.07 2.29 8.06 -52.48 -0.42 1.86 16 8 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 9 N -0.90 -27.49 13.96 55.43 0.77 -26.71 16 10 Si 0.87 21.58 27.47 -169.99 -4.67 16.91 16 11 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 14 C 0.51 9.95 7.66 -10.99 -0.08 9.87 16 15 O -0.53 -12.89 15.61 5.56 0.09 -12.80 16 16 C -0.11 -1.47 4.38 -29.04 -0.13 -1.60 16 17 C 0.02 0.25 4.37 -104.63 -0.46 -0.21 16 18 C -0.22 -3.05 8.69 -39.43 -0.34 -3.40 16 19 C 0.14 2.07 6.70 -39.15 -0.26 1.81 16 20 O -0.31 -4.10 10.28 -34.34 -0.35 -4.45 16 21 C 0.03 0.23 9.81 101.05 0.99 1.23 16 22 C 0.03 0.51 6.73 -39.03 -0.26 0.25 16 23 O -0.47 -6.82 13.07 -45.28 -0.59 -7.42 16 24 C 0.14 2.19 6.70 -39.15 -0.26 1.93 16 25 O -0.31 -4.37 10.28 -34.32 -0.35 -4.72 16 26 C 0.02 0.25 9.81 101.05 0.99 1.25 16 27 C -0.21 -3.18 8.69 -39.43 -0.34 -3.52 16 28 H 0.09 0.90 8.06 -52.48 -0.42 0.48 16 29 H 0.10 1.12 7.84 -52.49 -0.41 0.71 16 30 H 0.10 1.16 7.83 -52.49 -0.41 0.75 16 31 H 0.09 1.41 7.72 -51.93 -0.40 1.00 16 32 H 0.08 0.92 6.44 -51.93 -0.33 0.59 16 33 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 34 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 35 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 36 H 0.10 1.18 7.34 -51.93 -0.38 0.80 16 37 H 0.10 1.06 7.71 -51.92 -0.40 0.66 16 38 H 0.13 1.57 6.29 -52.48 -0.33 1.24 16 39 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 40 H 0.06 0.57 7.66 -51.93 -0.40 0.17 16 41 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.38 3.53 9.07 45.56 0.41 3.94 16 43 H 0.06 0.73 7.66 -51.93 -0.40 0.33 16 44 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 46 H 0.13 1.83 6.29 -52.48 -0.33 1.50 16 LS Contribution 388.62 15.07 5.86 5.86 Total: -1.00 -37.65 388.62 -6.03 -43.68 By element: Atomic # 1 Polarization: 10.02 SS G_CDS: -5.76 Total: 4.26 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -0.58 Total: -2.60 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 0.34 Total: -38.72 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -1.21 Total: -29.39 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.65 -6.03 -43.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293719626.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.222 kcal (2) G-P(sol) polarization free energy of solvation -37.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds