Wall clock time and date at job start Tue Mar 31 2020 19:02:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50697 * 119.99920 * 2 1 4 4 N 1.46500 * 109.46832 * 125.00154 * 3 2 1 5 5 C 1.46498 * 119.99970 * 269.99871 * 4 3 2 6 6 C 1.50703 * 109.47427 * 270.00072 * 5 4 3 7 7 H 1.08003 * 119.99601 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00277 * 179.97438 * 6 5 4 9 9 N 1.31507 * 120.00187 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 119.99883 * 359.97438 * 8 6 5 11 11 H 1.48500 * 109.47201 * 90.00012 * 10 8 6 12 12 H 1.48502 * 109.47251 * 209.99922 * 10 8 6 13 13 H 1.48502 * 109.47453 * 329.99993 * 10 8 6 14 14 C 1.34776 * 120.00158 * 90.00318 * 4 3 2 15 15 O 1.21278 * 120.00293 * 180.02562 * 14 4 3 16 16 C 1.50701 * 119.99962 * 359.97438 * 14 4 3 17 17 C 1.50699 * 109.47381 * 180.02562 * 16 14 4 18 18 C 1.38230 * 119.90938 * 89.99593 * 17 16 14 19 19 C 1.38668 * 120.08554 * 179.97438 * 18 17 16 20 20 O 1.36004 * 120.04270 * 180.02562 * 19 18 17 21 21 C 1.42903 * 116.99787 * 359.97438 * 20 19 18 22 22 C 1.38973 * 119.91448 * 0.27301 * 19 18 17 23 23 O 1.36091 * 120.09432 * 179.70444 * 22 19 18 24 24 C 1.38981 * 119.81674 * 359.45748 * 22 19 18 25 25 O 1.36000 * 120.04457 * 180.25020 * 24 22 19 26 26 C 1.42894 * 117.00190 * 180.29888 * 25 24 22 27 27 C 1.38222 * 119.90994 * 269.98210 * 17 16 14 28 28 H 1.08008 * 119.99897 * 179.97438 * 1 2 3 29 29 H 1.07990 * 120.00137 * 359.97438 * 1 2 3 30 30 H 1.07997 * 119.99764 * 180.02562 * 2 1 3 31 31 H 1.09004 * 109.47110 * 5.00300 * 3 2 1 32 32 H 1.08997 * 109.47078 * 245.00078 * 3 2 1 33 33 H 1.09007 * 109.47389 * 30.00255 * 5 4 3 34 34 H 1.08997 * 109.47502 * 150.00232 * 5 4 3 35 35 H 0.97005 * 120.00506 * 180.02562 * 9 8 6 36 36 H 1.09000 * 109.46813 * 60.00023 * 16 14 4 37 37 H 1.09007 * 109.46889 * 300.00407 * 16 14 4 38 38 H 1.08003 * 119.95667 * 0.02562 * 18 17 16 39 39 H 1.09002 * 109.47382 * 60.00075 * 21 20 19 40 40 H 1.09001 * 109.46938 * 300.00061 * 21 20 19 41 41 H 1.09004 * 109.46926 * 180.02562 * 21 20 19 42 42 H 0.96702 * 114.00047 * 89.99966 * 23 22 19 43 43 H 1.08998 * 109.47675 * 59.99791 * 26 25 24 44 44 H 1.08999 * 109.47404 * 179.97438 * 26 25 24 45 45 H 1.09006 * 109.46944 * 299.99711 * 26 25 24 46 46 H 1.08003 * 119.95678 * 0.03513 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.5589 1.8648 2.4248 6 6 2.8443 3.3435 2.4805 7 1 3.3033 3.8370 1.6366 8 6 2.5184 4.0666 3.6083 9 7 2.7670 5.3570 3.6567 10 14 1.7225 3.2134 5.0671 11 1 2.7777 2.7223 5.9894 12 1 0.8460 4.1738 5.7844 13 1 0.9112 2.0659 4.5873 14 6 4.2497 0.8661 0.9824 15 8 5.0197 0.8878 1.9191 16 6 4.6969 0.3174 -0.3480 17 6 6.1312 -0.1343 -0.2486 18 6 6.4204 -1.4335 0.1243 19 6 7.7389 -1.8532 0.2164 20 8 8.0224 -3.1319 0.5829 21 6 6.9127 -3.9888 0.8590 22 6 8.7702 -0.9640 -0.0613 23 8 10.0656 -1.3703 0.0338 24 6 8.4750 0.3398 -0.4414 25 8 9.4806 1.2123 -0.7191 26 6 9.1035 2.5378 -1.0971 27 6 7.1539 0.7517 -0.5309 28 1 -0.5400 -0.9354 -0.0004 29 1 -0.5400 0.9352 0.0004 30 1 1.8500 -0.9353 -0.0004 31 1 1.3585 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 1.4887 1.6965 2.5460 34 1 3.0989 1.3602 3.2260 35 1 2.5381 5.8657 4.4503 36 1 4.6120 1.0938 -1.1083 37 1 4.0677 -0.5296 -0.6217 38 1 5.6184 -2.1229 0.3434 39 1 6.2869 -4.0708 -0.0298 40 1 6.3270 -3.5722 1.6785 41 1 7.2776 -4.9770 1.1393 42 1 10.4247 -1.7349 -0.7868 43 1 8.5319 2.9969 -0.2906 44 1 9.9986 3.1292 -1.2898 45 1 8.4924 2.4985 -1.9989 46 1 6.9239 1.7661 -0.8216 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293719626.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:43 Heat of formation + Delta-G solvation = -122.003103 kcal Electronic energy + Delta-G solvation = -29332.518364 eV Core-core repulsion = 25188.481427 eV Total energy + Delta-G solvation = -4144.036937 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.86551 -40.73667 -39.99630 -38.14932 -37.71628 -37.05178 -35.07436 -33.72630 -32.89038 -30.68797 -30.48570 -28.79145 -28.74749 -27.08603 -26.76676 -24.47713 -23.01851 -22.81008 -21.14744 -20.09078 -19.67196 -19.09064 -18.63530 -18.16682 -17.92674 -17.51270 -17.24998 -17.10537 -16.46510 -16.36200 -16.17652 -15.96184 -15.63012 -15.48045 -14.91647 -14.74733 -14.66193 -14.40732 -14.17289 -13.70525 -13.59670 -13.39674 -13.24493 -13.04883 -12.91866 -12.68940 -12.56675 -12.49057 -12.43907 -12.20794 -12.08205 -11.93342 -11.73908 -11.67588 -11.60822 -10.84093 -10.67407 -10.28674 -9.43432 -9.23365 -9.20745 -8.34800 -6.39001 0.09996 0.30832 1.29869 1.34763 1.36470 1.42835 1.80045 1.84069 2.29408 2.30948 2.66383 2.67166 3.00182 3.16106 3.52509 3.80154 3.89357 3.99235 4.12005 4.17918 4.27117 4.27985 4.30736 4.33111 4.38583 4.45112 4.51187 4.56299 4.66103 4.70359 4.74926 4.78203 4.85055 4.94197 4.98545 5.07218 5.11237 5.35340 5.43816 5.46261 5.54588 5.75652 5.95657 6.18793 6.23648 6.24110 6.62262 6.69257 6.88014 7.21757 7.42914 8.81951 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010644 B = 0.003515 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.958227 B = 7964.242383 C = 8907.704319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.181 4.181 3 C 0.129 3.871 4 N -0.595 5.595 5 C 0.228 3.772 6 C -0.533 4.533 7 H 0.032 0.968 8 C 0.013 3.987 9 N -0.944 5.944 10 Si 0.942 3.058 11 H -0.280 1.280 12 H -0.274 1.274 13 H -0.238 1.238 14 C 0.503 3.497 15 O -0.587 6.587 16 C -0.092 4.092 17 C 0.003 3.997 18 C -0.217 4.217 19 C 0.134 3.866 20 O -0.321 6.321 21 C 0.016 3.984 22 C 0.015 3.985 23 O -0.487 6.487 24 C 0.130 3.870 25 O -0.321 6.321 26 C 0.018 3.982 27 C -0.224 4.224 28 H 0.117 0.883 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.015 0.985 35 H 0.268 0.732 36 H 0.127 0.873 37 H 0.140 0.860 38 H 0.153 0.847 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.124 0.876 42 H 0.395 0.605 43 H 0.046 0.954 44 H 0.126 0.874 45 H 0.075 0.925 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.771 -17.640 -15.681 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.200 4.200 3 C 0.007 3.993 4 N -0.325 5.325 5 C 0.106 3.894 6 C -0.572 4.572 7 H 0.050 0.950 8 C -0.185 4.185 9 N -0.585 5.585 10 Si 0.765 3.235 11 H -0.206 1.206 12 H -0.199 1.199 13 H -0.161 1.161 14 C 0.292 3.708 15 O -0.467 6.467 16 C -0.131 4.131 17 C 0.002 3.998 18 C -0.235 4.235 19 C 0.087 3.913 20 O -0.234 6.234 21 C -0.078 4.078 22 C -0.031 4.031 23 O -0.298 6.298 24 C 0.083 3.917 25 O -0.234 6.234 26 C -0.076 4.076 27 C -0.243 4.243 28 H 0.135 0.865 29 H 0.114 0.886 30 H 0.141 0.859 31 H 0.093 0.907 32 H 0.127 0.873 33 H 0.064 0.936 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.145 0.855 37 H 0.158 0.842 38 H 0.171 0.829 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.142 0.858 42 H 0.251 0.749 43 H 0.064 0.936 44 H 0.144 0.856 45 H 0.093 0.907 46 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.480 -17.393 -14.482 22.899 hybrid contribution -0.434 0.578 0.612 0.947 sum 3.047 -16.815 -13.870 22.009 Atomic orbital electron populations 1.24072 0.95673 1.02850 0.98365 1.23328 0.96656 0.98201 1.01794 1.20902 0.92744 0.96598 0.89046 1.47967 1.11828 1.59932 1.12766 1.19248 0.95272 0.92082 0.82831 1.21566 1.40320 0.93464 1.01813 0.94957 1.25783 0.96004 0.95317 1.01374 1.70035 1.49525 1.08428 1.30464 0.85801 0.79075 0.79477 0.79143 1.20552 1.19950 1.16112 1.21099 0.81282 0.77674 0.90777 1.90693 1.53737 1.58051 1.44247 1.20812 0.93117 1.04502 0.94667 1.19092 0.94406 0.92466 0.93841 1.21084 0.95067 0.97970 1.09410 1.18984 0.92344 0.84607 0.95333 1.86092 1.36549 1.18566 1.82202 1.23424 0.88918 0.93859 1.01606 1.16920 0.84101 0.89738 1.12346 1.84913 1.22339 1.82819 1.39680 1.19063 0.87683 0.89637 0.95268 1.86070 1.31869 1.22763 1.82692 1.23376 1.04195 0.79787 1.00256 1.21097 0.90955 1.01479 1.10792 0.86463 0.88561 0.85939 0.90661 0.87316 0.93622 0.96732 0.92334 0.85535 0.84245 0.82919 0.90508 0.92851 0.85763 0.74854 0.93566 0.85586 0.90657 0.84263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.26 14.32 67.78 0.97 -2.29 16 2 C -0.18 -3.81 9.74 25.64 0.25 -3.56 16 3 C 0.13 3.49 5.65 85.63 0.48 3.98 16 4 N -0.59 -22.79 2.44 -830.50 -2.03 -24.82 16 5 C 0.23 10.95 4.23 85.63 0.36 11.31 16 6 C -0.53 -31.01 9.94 25.60 0.25 -30.75 16 7 H 0.03 2.08 8.06 -2.91 -0.02 2.06 16 8 C 0.01 0.78 5.47 84.66 0.46 1.25 16 9 N -0.94 -59.55 13.96 21.45 0.30 -59.25 16 10 Si 0.94 44.62 27.47 68.60 1.88 46.50 16 11 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 13 H -0.24 -10.11 6.54 99.48 0.65 -9.46 16 14 C 0.50 19.25 7.66 87.66 0.67 19.92 16 15 O -0.59 -29.24 15.61 -3.02 -0.05 -29.28 16 16 C -0.09 -2.29 4.38 29.10 0.13 -2.17 16 17 C 0.00 0.08 4.37 -19.87 -0.09 -0.01 16 18 C -0.22 -5.80 8.69 22.37 0.19 -5.60 16 19 C 0.13 3.86 6.70 22.55 0.15 4.01 16 20 O -0.32 -8.23 10.28 -79.65 -0.82 -9.05 16 21 C 0.02 0.26 9.81 113.37 1.11 1.37 16 22 C 0.02 0.47 6.73 22.62 0.15 0.62 16 23 O -0.49 -14.14 13.07 -70.43 -0.92 -15.07 16 24 C 0.13 4.02 6.70 22.55 0.15 4.17 16 25 O -0.32 -9.25 10.28 -79.61 -0.82 -10.07 16 26 C 0.02 0.38 9.81 113.37 1.11 1.50 16 27 C -0.22 -6.69 8.69 22.37 0.19 -6.49 16 28 H 0.12 1.72 8.06 -2.91 -0.02 1.70 16 29 H 0.10 1.90 7.84 -2.92 -0.02 1.87 16 30 H 0.12 2.17 7.83 -2.91 -0.02 2.15 16 31 H 0.07 2.26 7.72 -2.38 -0.02 2.24 16 32 H 0.11 2.23 6.44 -2.39 -0.02 2.21 16 33 H 0.05 2.04 7.13 -2.38 -0.02 2.02 16 34 H 0.01 0.77 6.85 -2.39 -0.02 0.75 16 35 H 0.27 15.74 8.31 -92.70 -0.77 14.96 16 36 H 0.13 2.55 7.34 -2.39 -0.02 2.53 16 37 H 0.14 2.36 7.71 -2.38 -0.02 2.34 16 38 H 0.15 3.26 6.29 -2.91 -0.02 3.24 16 39 H 0.08 0.92 7.66 -2.39 -0.02 0.90 16 40 H 0.05 0.93 7.66 -2.39 -0.02 0.91 16 41 H 0.12 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.40 7.39 9.07 -74.06 -0.67 6.72 16 43 H 0.05 1.12 7.66 -2.39 -0.02 1.10 16 44 H 0.13 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.07 1.29 7.66 -2.38 -0.02 1.27 16 46 H 0.14 3.82 6.29 -2.91 -0.02 3.80 16 Total: -1.00 -86.08 388.62 4.40 -81.69 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: 0.28 Total: 22.10 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 6.56 Total: -2.75 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -1.73 Total: -84.07 kcal Atomic # 8 Polarization: -60.86 SS G_CDS: -2.60 Total: -63.47 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.88 Total: 46.50 kcal Total: -86.08 4.40 -81.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293719626.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.317 kcal (2) G-P(sol) polarization free energy of solvation -86.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds