Wall clock time and date at job start Tue Mar 31 2020 18:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50696 * 119.99870 * 2 1 4 4 N 1.46503 * 109.47147 * 126.19088 * 3 2 1 5 5 C 1.46503 * 119.99949 * 277.38791 * 4 3 2 6 6 C 1.50694 * 109.46889 * 269.99618 * 5 4 3 7 7 H 1.08005 * 120.00085 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99700 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00626 * 0.02562 * 8 6 5 10 10 Si 1.86811 * 119.99805 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.46557 * 90.00702 * 10 8 6 12 12 H 1.48500 * 109.47023 * 210.00516 * 10 8 6 13 13 H 1.48498 * 109.47038 * 330.00603 * 10 8 6 14 14 C 1.34775 * 120.00146 * 97.38213 * 4 3 2 15 15 O 1.21585 * 120.00273 * 185.64982 * 14 4 3 16 16 C 1.47610 * 120.00070 * 5.65772 * 14 4 3 17 17 C 1.39705 * 120.06586 * 311.16520 * 16 14 4 18 18 C 1.37793 * 120.00241 * 179.97438 * 17 16 14 19 19 C 1.38832 * 120.15012 * 0.02562 * 18 17 16 20 20 O 1.35803 * 119.93272 * 179.97438 * 19 18 17 21 21 C 1.42899 * 116.99886 * 0.02562 * 20 19 18 22 22 C 1.39403 * 120.14230 * 0.02562 * 19 18 17 23 23 O 1.36003 * 120.00234 * 179.97438 * 22 19 18 24 24 C 1.42909 * 116.99694 * 180.02562 * 23 22 19 25 25 C 1.52999 * 109.46979 * 179.97438 * 24 23 22 26 26 O 1.42910 * 109.47160 * 64.99490 * 25 24 23 27 27 C 1.38141 * 119.99229 * 0.23263 * 22 19 18 28 28 H 1.07997 * 119.99799 * 359.97438 * 1 2 3 29 29 H 1.07995 * 119.99930 * 180.02562 * 1 2 3 30 30 H 1.08001 * 119.99458 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47637 * 6.18922 * 3 2 1 32 32 H 1.08999 * 109.46872 * 246.18305 * 3 2 1 33 33 H 1.08998 * 109.47009 * 30.00043 * 5 4 3 34 34 H 1.09002 * 109.46979 * 149.99839 * 5 4 3 35 35 H 0.96992 * 120.00712 * 179.97438 * 9 8 6 36 36 H 1.07992 * 120.00234 * 359.95863 * 17 16 14 37 37 H 1.07996 * 119.92754 * 179.97438 * 18 17 16 38 38 H 1.09005 * 109.46786 * 59.99428 * 21 20 19 39 39 H 1.08992 * 109.47219 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47034 * 300.00717 * 21 20 19 41 41 H 1.08996 * 109.47121 * 59.99659 * 24 23 22 42 42 H 1.09001 * 109.46967 * 299.99544 * 24 23 22 43 43 H 1.08997 * 109.47143 * 184.99664 * 25 24 23 44 44 H 1.09004 * 109.47172 * 305.00113 * 25 24 23 45 45 H 0.96693 * 113.99912 * 180.02562 * 26 25 24 46 46 H 1.08003 * 120.07057 * 179.72956 * 27 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0140 1.3202 1.1147 5 6 2.5607 1.6863 2.4589 6 6 2.7017 3.1745 2.6486 7 1 3.0898 3.7867 1.8478 8 6 2.3344 3.7549 3.8441 9 7 1.8615 3.0098 4.8190 10 14 2.5098 5.5998 4.0796 11 1 1.2576 6.2745 3.6528 12 1 2.7670 5.8937 5.5123 13 1 3.6443 6.0976 3.2608 14 6 4.3054 0.9973 0.9037 15 8 5.0716 0.9097 1.8436 16 6 4.7896 0.7502 -0.4687 17 6 4.0829 -0.1060 -1.3167 18 6 4.5358 -0.3353 -2.5977 19 6 5.6944 0.2825 -3.0487 20 8 6.1370 0.0529 -4.3119 21 6 5.3610 -0.8340 -5.1201 22 6 6.4050 1.1372 -2.2073 23 8 7.5399 1.7404 -2.6519 24 6 8.2176 2.6031 -1.7360 25 6 9.4622 3.1849 -2.4092 26 8 9.0675 4.0235 -3.4970 27 6 5.9592 1.3671 -0.9202 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3605 2.1306 0.1108 32 1 2.6045 1.4122 -0.9402 33 1 1.5155 1.4019 2.5799 34 1 3.1669 1.1664 3.2009 35 1 1.6034 3.4180 5.6602 36 1 3.1817 -0.5883 -0.9682 37 1 3.9887 -0.9977 -3.2521 38 1 4.3524 -0.4358 -5.2309 39 1 5.8237 -0.9291 -6.1023 40 1 5.3146 -1.8131 -4.6434 41 1 8.5137 2.0356 -0.8538 42 1 7.5517 3.4137 -1.4400 43 1 10.0266 3.7716 -1.6844 44 1 10.0857 2.3731 -2.7840 45 1 9.8073 4.4269 -3.9711 46 1 6.5111 2.0256 -0.2659 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293904771.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:53:49 Heat of formation + Delta-G solvation = -122.213816 kcal Electronic energy + Delta-G solvation = -29231.706773 eV Core-core repulsion = 25087.660699 eV Total energy + Delta-G solvation = -4144.046074 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.90698 -40.67193 -39.68667 -37.92388 -37.41984 -37.21557 -35.12446 -33.72789 -32.03984 -31.62643 -30.44856 -29.40934 -28.12701 -27.02790 -25.49551 -24.55656 -23.63499 -22.50587 -21.42094 -20.50572 -19.46317 -18.75093 -18.63912 -18.47693 -17.87294 -17.55238 -17.23161 -16.93749 -16.35800 -16.21238 -16.06268 -15.92829 -15.51379 -15.38971 -15.10250 -14.79122 -14.55829 -14.31453 -14.24446 -13.70069 -13.57422 -13.30184 -13.28607 -12.99110 -12.93999 -12.81596 -12.59534 -12.40535 -12.26382 -12.24598 -12.03446 -11.97614 -11.93898 -11.67730 -11.01476 -10.80756 -10.65715 -10.33501 -9.89698 -9.54034 -8.90194 -8.24338 -6.39389 -0.08645 0.22306 1.31065 1.35360 1.37922 1.48293 1.71869 2.09247 2.24565 2.30230 2.41516 2.64981 3.05326 3.27201 3.52568 3.69979 3.86622 3.92289 4.05505 4.08199 4.14346 4.16054 4.19891 4.38069 4.41136 4.46217 4.48218 4.48611 4.60106 4.69770 4.80220 4.82062 4.83693 5.02678 5.04348 5.10344 5.21382 5.28040 5.43397 5.49830 5.69880 5.73658 5.93196 6.00770 6.03547 6.49807 6.62075 6.70076 6.89283 7.20669 7.36341 8.83093 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.009740 B = 0.003764 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.014641 B = 7436.261322 C = 9602.338502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.191 4.191 3 C 0.126 3.874 4 N -0.587 5.587 5 C 0.265 3.735 6 C -0.548 4.548 7 H 0.051 0.949 8 C 0.012 3.988 9 N -0.925 5.925 10 Si 0.966 3.034 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.274 1.274 14 C 0.546 3.454 15 O -0.593 6.593 16 C -0.134 4.134 17 C -0.086 4.086 18 C -0.162 4.162 19 C 0.116 3.884 20 O -0.322 6.322 21 C 0.012 3.988 22 C 0.083 3.917 23 O -0.308 6.308 24 C 0.042 3.958 25 C 0.084 3.916 26 O -0.592 6.592 27 C -0.137 4.137 28 H 0.099 0.901 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.027 0.973 34 H 0.000 1.000 35 H 0.268 0.732 36 H 0.157 0.843 37 H 0.182 0.818 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.069 0.931 45 H 0.400 0.600 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.877 -6.565 -22.560 24.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.209 4.209 3 C 0.004 3.996 4 N -0.316 5.316 5 C 0.144 3.856 6 C -0.586 4.586 7 H 0.069 0.931 8 C -0.187 4.187 9 N -0.564 5.564 10 Si 0.790 3.210 11 H -0.187 1.187 12 H -0.204 1.204 13 H -0.199 1.199 14 C 0.335 3.665 15 O -0.475 6.475 16 C -0.137 4.137 17 C -0.104 4.104 18 C -0.180 4.180 19 C 0.069 3.931 20 O -0.236 6.236 21 C -0.082 4.082 22 C 0.038 3.962 23 O -0.222 6.222 24 C -0.033 4.033 25 C 0.007 3.993 26 O -0.401 6.401 27 C -0.156 4.156 28 H 0.117 0.883 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.045 0.955 34 H 0.018 0.982 35 H 0.077 0.923 36 H 0.175 0.825 37 H 0.199 0.801 38 H 0.090 0.910 39 H 0.137 0.863 40 H 0.090 0.910 41 H 0.104 0.896 42 H 0.076 0.924 43 H 0.114 0.886 44 H 0.087 0.913 45 H 0.250 0.750 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 6.856 -6.700 -21.979 23.979 hybrid contribution 0.472 1.112 1.067 1.611 sum 7.328 -5.588 -20.912 22.853 Atomic orbital electron populations 1.24081 0.95261 1.03143 0.97093 1.23287 0.96854 0.97792 1.02998 1.20994 0.92106 0.96844 0.89644 1.48117 1.07907 1.64563 1.11009 1.18750 0.93975 0.94348 0.78559 1.21683 1.43469 0.93498 0.99983 0.93065 1.25817 0.94377 1.03443 0.95102 1.70040 1.43712 1.37551 1.05139 0.85438 0.78913 0.79125 0.77481 1.18718 1.20375 1.19911 1.18789 0.82168 0.76595 0.88910 1.90708 1.56424 1.54573 1.45765 1.19550 0.97554 1.03051 0.93570 1.21569 0.99676 0.96439 0.92718 1.21306 0.96028 1.03447 0.97246 1.18576 0.93582 0.95770 0.85171 1.86131 1.52040 1.64413 1.21006 1.23480 0.96944 0.92684 0.95056 1.18156 0.89471 0.97004 0.91591 1.86176 1.35306 1.59278 1.41484 1.23193 0.94754 0.92610 0.92708 1.22248 0.93276 0.93911 0.89877 1.86527 1.39147 1.66523 1.47935 1.20953 0.97232 1.02813 0.94629 0.88283 0.85957 0.86187 0.90593 0.87916 0.95468 0.98182 0.92284 0.82539 0.80097 0.90979 0.86339 0.90969 0.89594 0.92421 0.88639 0.91277 0.74958 0.85409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.71 14.32 67.77 0.97 -2.74 16 2 C -0.19 -5.18 8.56 25.64 0.22 -4.96 16 3 C 0.13 4.26 5.34 85.63 0.46 4.72 16 4 N -0.59 -26.60 2.45 -834.19 -2.04 -28.64 16 5 C 0.26 14.72 5.21 85.63 0.45 15.17 16 6 C -0.55 -32.36 9.39 25.60 0.24 -32.12 16 7 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 8 C 0.01 0.70 5.46 84.66 0.46 1.16 16 9 N -0.93 -56.36 13.29 21.45 0.28 -56.08 16 10 Si 0.97 45.44 29.54 68.60 2.03 47.46 16 11 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 12 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 13 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 14 C 0.55 25.28 7.22 86.72 0.63 25.91 16 15 O -0.59 -33.14 16.57 -3.98 -0.07 -33.21 16 16 C -0.13 -4.82 4.96 -20.09 -0.10 -4.92 16 17 C -0.09 -2.30 7.46 22.52 0.17 -2.14 16 18 C -0.16 -3.50 9.01 22.31 0.20 -3.30 16 19 C 0.12 3.04 6.71 22.69 0.15 3.20 16 20 O -0.32 -7.58 10.27 -77.32 -0.79 -8.37 16 21 C 0.01 0.15 9.81 113.37 1.11 1.26 16 22 C 0.08 2.60 6.69 22.53 0.15 2.75 16 23 O -0.31 -9.36 9.88 -73.43 -0.73 -10.09 16 24 C 0.04 1.06 5.12 71.98 0.37 1.43 16 25 C 0.08 1.50 7.43 71.98 0.53 2.04 16 26 O -0.59 -12.13 13.63 -144.34 -1.97 -14.10 16 27 C -0.14 -4.74 8.70 22.61 0.20 -4.55 16 28 H 0.10 2.34 7.84 -2.91 -0.02 2.32 16 29 H 0.12 2.24 8.06 -2.91 -0.02 2.21 16 30 H 0.12 2.95 6.51 -2.91 -0.02 2.94 16 31 H 0.08 2.68 7.78 -2.39 -0.02 2.66 16 32 H 0.10 3.05 5.26 -2.39 -0.01 3.04 16 33 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 34 H 0.00 0.00 7.35 -2.39 -0.02 -0.01 16 35 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 36 H 0.16 3.70 4.14 -2.91 -0.01 3.69 16 37 H 0.18 2.30 6.27 -2.91 -0.02 2.28 16 38 H 0.07 0.66 7.65 -2.38 -0.02 0.64 16 39 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.07 0.65 7.65 -2.39 -0.02 0.63 16 41 H 0.09 1.97 7.65 -2.39 -0.02 1.95 16 42 H 0.06 1.57 7.67 -2.39 -0.02 1.55 16 43 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 45 H 0.40 3.77 9.12 -74.06 -0.68 3.09 16 46 H 0.13 4.62 6.28 -2.91 -0.02 4.60 16 Total: -1.00 -84.63 386.20 3.27 -81.37 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: 0.34 Total: 18.74 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 6.21 Total: 2.92 kcal Atomic # 7 Polarization: -82.97 SS G_CDS: -1.76 Total: -84.72 kcal Atomic # 8 Polarization: -62.21 SS G_CDS: -3.55 Total: -65.76 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.46 kcal Total: -84.63 3.27 -81.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293904771.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.845 kcal (2) G-P(sol) polarization free energy of solvation -84.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds