Wall clock time and date at job start Tue Mar 31 2020 19:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99907 * 2 1 4 4 N 1.46503 * 109.47336 * 124.99974 * 3 2 1 5 5 C 1.46505 * 119.99897 * 274.97078 * 4 3 2 6 6 C 1.50706 * 109.46717 * 269.99852 * 5 4 3 7 7 H 1.07996 * 120.00408 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99587 * 179.97438 * 6 5 4 9 9 N 1.31521 * 120.00272 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 119.99879 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.47073 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47086 * 120.00005 * 10 8 6 13 13 H 1.48499 * 109.47310 * 240.00290 * 10 8 6 14 14 C 1.34776 * 120.00053 * 94.96606 * 4 3 2 15 15 O 1.21629 * 119.99804 * 185.56294 * 14 4 3 16 16 C 1.47284 * 120.00347 * 5.56564 * 14 4 3 17 17 C 1.39958 * 120.11449 * 55.04284 * 16 14 4 18 18 C 1.37898 * 119.90085 * 180.02562 * 17 16 14 19 19 O 1.36069 * 119.92700 * 180.02562 * 18 17 16 20 20 C 1.42897 * 117.00013 * 359.97438 * 19 18 17 21 21 C 1.39570 * 120.14713 * 359.74529 * 18 17 16 22 22 O 1.35793 * 119.88132 * 180.28480 * 21 18 17 23 23 C 1.42897 * 117.00203 * 180.23236 * 22 21 18 24 24 C 1.38567 * 120.23759 * 0.50850 * 21 18 17 25 25 C 1.38483 * 120.09990 * 359.49508 * 24 21 18 26 26 O 1.35722 * 120.07804 * 180.23304 * 25 24 21 27 27 C 1.42899 * 117.00041 * 359.97438 * 26 25 24 28 28 H 1.07999 * 119.99594 * 180.02562 * 1 2 3 29 29 H 1.08000 * 120.00145 * 0.02562 * 1 2 3 30 30 H 1.08000 * 120.00264 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.47343 * 5.00033 * 3 2 1 32 32 H 1.08998 * 109.47204 * 244.99673 * 3 2 1 33 33 H 1.08997 * 109.47252 * 29.99244 * 5 4 3 34 34 H 1.08996 * 109.47486 * 150.00112 * 5 4 3 35 35 H 0.96995 * 119.99532 * 179.97438 * 9 8 6 36 36 H 1.07999 * 120.04930 * 0.04294 * 17 16 14 37 37 H 1.09000 * 109.47572 * 179.97438 * 20 19 18 38 38 H 1.08994 * 109.47318 * 300.00453 * 20 19 18 39 39 H 1.09003 * 109.47229 * 60.00295 * 20 19 18 40 40 H 1.09000 * 109.47243 * 299.99219 * 23 22 21 41 41 H 1.09004 * 109.47175 * 59.99643 * 23 22 21 42 42 H 1.08999 * 109.47308 * 179.97438 * 23 22 21 43 43 H 1.08003 * 119.94689 * 179.76794 * 24 21 18 44 44 H 1.08993 * 109.47109 * 59.99930 * 27 26 25 45 45 H 1.08998 * 109.47448 * 180.02562 * 27 26 25 46 46 H 1.09006 * 109.47093 * 300.00338 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3320 1.1314 5 6 2.5286 1.7628 2.4522 6 6 2.7147 3.2521 2.5890 7 1 3.1375 3.8207 1.7740 8 6 2.3450 3.8887 3.7548 9 7 1.8305 3.1963 4.7476 10 14 2.5763 5.7345 3.9248 11 1 3.1716 6.2758 2.6767 12 1 1.2600 6.3782 4.1656 13 1 3.4818 6.0168 5.0674 14 6 4.2775 0.9603 0.9573 15 8 5.0241 0.8853 1.9146 16 6 4.7764 0.6449 -0.3921 17 6 4.6448 1.5794 -1.4256 18 6 5.1130 1.2793 -2.6874 19 8 4.9859 2.1877 -3.6925 20 6 4.3574 3.4296 -3.3688 21 6 5.7223 0.0482 -2.9346 22 8 6.1866 -0.2394 -4.1779 23 6 6.7947 -1.5191 -4.3633 24 6 5.8510 -0.8835 -1.9170 25 6 5.3843 -0.5927 -0.6460 26 8 5.5148 -1.5037 0.3515 27 6 6.1434 -2.7434 0.0197 28 1 -0.5399 -0.9353 0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3585 2.1317 0.0896 32 1 2.6213 1.4026 -0.9313 33 1 1.4725 1.5170 2.5635 34 1 3.1039 1.2524 3.2244 35 1 1.5709 3.6442 5.5678 36 1 4.1776 2.5343 -1.2350 37 1 4.3205 4.0605 -4.2569 38 1 3.3442 3.2423 -3.0134 39 1 4.9287 3.9336 -2.5892 40 1 7.6552 -1.6120 -3.7008 41 1 6.0720 -2.3017 -4.1323 42 1 7.1205 -1.6200 -5.3986 43 1 6.3199 -1.8362 -2.1144 44 1 7.1554 -2.5534 -0.3377 45 1 6.1834 -3.3788 0.9044 46 1 5.5704 -3.2439 -0.7610 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293962088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:31 Heat of formation + Delta-G solvation = -104.868875 kcal Electronic energy + Delta-G solvation = -30152.076870 eV Core-core repulsion = 26008.782929 eV Total energy + Delta-G solvation = -4143.293941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.13568 -40.58763 -39.98545 -39.41352 -37.21450 -36.84850 -35.09167 -33.70341 -32.01696 -30.87839 -29.50372 -29.08762 -28.08655 -27.49542 -26.83542 -25.37055 -23.62872 -22.96486 -21.29863 -20.69977 -19.64064 -18.77861 -18.60942 -18.38305 -17.73092 -17.54027 -17.09805 -16.92517 -16.54387 -16.26477 -16.13955 -16.05829 -15.71013 -15.59944 -15.47666 -14.76670 -14.46952 -14.26146 -14.13366 -13.77937 -13.61350 -13.32510 -13.27212 -12.96400 -12.86100 -12.62737 -12.57211 -12.52134 -12.46033 -12.32294 -12.26606 -12.21288 -12.09672 -11.65560 -11.25693 -10.72218 -10.64417 -10.36260 -9.81050 -9.47669 -8.66967 -8.21252 -6.36749 -0.15361 0.23461 1.29047 1.37098 1.39995 1.51647 1.79584 2.14427 2.21102 2.32115 2.37340 2.41420 2.58525 3.08184 3.53862 3.61886 3.82547 3.99904 4.06967 4.19091 4.22365 4.30801 4.34406 4.35548 4.37220 4.40875 4.42142 4.44497 4.53327 4.66545 4.72812 4.76631 4.78011 4.82649 5.01391 5.03335 5.04916 5.23753 5.28124 5.51614 5.68005 5.75016 5.93613 5.98467 6.06232 6.25039 6.51227 6.67902 6.74044 7.26320 7.42876 8.86397 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012076 B = 0.003896 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.133409 B = 7184.741992 C = 7825.811583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.185 4.185 3 C 0.128 3.872 4 N -0.590 5.590 5 C 0.265 3.735 6 C -0.543 4.543 7 H 0.057 0.943 8 C 0.008 3.992 9 N -0.928 5.928 10 Si 0.970 3.030 11 H -0.264 1.264 12 H -0.268 1.268 13 H -0.283 1.283 14 C 0.558 3.442 15 O -0.585 6.585 16 C -0.176 4.176 17 C -0.105 4.105 18 C 0.057 3.943 19 O -0.316 6.316 20 C 0.014 3.986 21 C 0.161 3.839 22 O -0.312 6.312 23 C 0.010 3.990 24 C -0.255 4.255 25 C 0.170 3.830 26 O -0.331 6.331 27 C 0.013 3.987 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.023 0.977 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.150 0.850 37 H 0.127 0.873 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.125 0.875 43 H 0.181 0.819 44 H 0.073 0.927 45 H 0.111 0.889 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.261 -10.344 -22.501 25.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.204 4.204 3 C 0.006 3.994 4 N -0.320 5.320 5 C 0.145 3.855 6 C -0.581 4.581 7 H 0.075 0.925 8 C -0.191 4.191 9 N -0.568 5.568 10 Si 0.794 3.206 11 H -0.188 1.188 12 H -0.193 1.193 13 H -0.209 1.209 14 C 0.347 3.653 15 O -0.466 6.466 16 C -0.180 4.180 17 C -0.124 4.124 18 C 0.012 3.988 19 O -0.230 6.230 20 C -0.080 4.080 21 C 0.113 3.887 22 O -0.225 6.225 23 C -0.084 4.084 24 C -0.274 4.274 25 C 0.122 3.878 26 O -0.244 6.244 27 C -0.081 4.081 28 H 0.135 0.865 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.041 0.959 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.168 0.832 37 H 0.146 0.854 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.143 0.857 43 H 0.198 0.802 44 H 0.092 0.908 45 H 0.129 0.871 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.560 -10.261 -21.998 24.902 hybrid contribution 0.076 0.629 1.137 1.302 sum 5.636 -9.632 -20.861 23.659 Atomic orbital electron populations 1.24035 0.95089 1.03085 0.98014 1.23240 0.96911 0.98054 1.02183 1.20976 0.92584 0.96417 0.89385 1.48090 1.08788 1.63442 1.11662 1.18727 0.93575 0.93976 0.79267 1.21726 1.41918 0.93400 1.01101 0.92478 1.25882 0.94452 1.03792 0.94945 1.70079 1.43108 1.37899 1.05682 0.85340 0.78217 0.78817 0.78273 1.18770 1.19296 1.20895 1.18410 0.82052 0.76295 0.88497 1.90713 1.57416 1.54723 1.43795 1.18886 1.09620 0.95695 0.93783 1.20900 1.01512 0.99924 0.90073 1.17937 1.03012 0.90184 0.87713 1.86136 1.77065 1.26446 1.33372 1.23367 0.97347 0.82983 1.04312 1.18160 0.94181 0.91036 0.85299 1.86150 1.72566 1.38381 1.25430 1.23517 0.97820 0.81814 1.05222 1.21166 1.12128 1.03220 0.90848 1.18607 0.93384 0.88248 0.87518 1.86222 1.75785 1.27218 1.35203 1.23474 0.97896 0.82272 1.04430 0.86465 0.87747 0.88170 0.89868 0.88102 0.95922 0.98654 0.92400 0.83232 0.85441 0.91824 0.92843 0.91342 0.91004 0.85716 0.80176 0.90824 0.87098 0.90236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.45 14.32 67.78 0.97 -3.48 16 2 C -0.18 -5.91 9.84 25.65 0.25 -5.66 16 3 C 0.13 4.61 5.67 85.63 0.49 5.10 16 4 N -0.59 -27.79 2.44 -834.51 -2.04 -29.83 16 5 C 0.27 15.16 5.22 85.63 0.45 15.61 16 6 C -0.54 -32.08 9.39 25.60 0.24 -31.84 16 7 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 8 C 0.01 0.48 5.46 84.65 0.46 0.95 16 9 N -0.93 -57.26 13.29 21.45 0.28 -56.97 16 10 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 11 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 14 C 0.56 27.03 6.76 86.62 0.59 27.61 16 15 O -0.59 -34.25 16.34 -1.67 -0.03 -34.28 16 16 C -0.18 -6.61 4.91 -20.00 -0.10 -6.71 16 17 C -0.10 -3.31 6.45 22.61 0.15 -3.16 16 18 C 0.06 1.60 6.69 22.51 0.15 1.75 16 19 O -0.32 -8.12 10.28 -80.28 -0.82 -8.94 16 20 C 0.01 0.27 9.81 113.37 1.11 1.39 16 21 C 0.16 4.03 6.70 22.67 0.15 4.18 16 22 O -0.31 -6.66 10.26 -77.18 -0.79 -7.45 16 23 C 0.01 0.11 9.81 113.37 1.11 1.22 16 24 C -0.25 -5.98 8.01 22.41 0.18 -5.80 16 25 C 0.17 5.49 6.68 22.81 0.15 5.64 16 26 O -0.33 -11.05 9.71 -87.99 -0.85 -11.90 16 27 C 0.01 0.25 9.81 113.37 1.11 1.36 16 28 H 0.12 2.61 8.06 -2.91 -0.02 2.58 16 29 H 0.10 2.70 7.84 -2.91 -0.02 2.68 16 30 H 0.10 3.24 8.06 -2.91 -0.02 3.21 16 31 H 0.08 2.96 7.76 -2.38 -0.02 2.94 16 32 H 0.10 3.16 4.42 -2.39 -0.01 3.15 16 33 H 0.02 1.32 8.07 -2.39 -0.02 1.30 16 34 H 0.00 -0.31 7.35 -2.39 -0.02 -0.33 16 35 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.15 4.55 5.79 -2.91 -0.02 4.53 16 37 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.06 1.13 7.66 -2.39 -0.02 1.12 16 39 H 0.05 1.06 7.65 -2.39 -0.02 1.04 16 40 H 0.07 0.59 7.65 -2.39 -0.02 0.57 16 41 H 0.07 0.56 7.65 -2.38 -0.02 0.55 16 42 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.18 2.72 4.49 -2.91 -0.01 2.70 16 44 H 0.07 1.08 7.66 -2.39 -0.02 1.06 16 45 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.08 1.05 7.66 -2.38 -0.02 1.03 16 Total: -1.00 -84.55 387.00 6.23 -78.31 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: 0.99 Total: 15.53 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 7.46 Total: 8.16 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -1.75 Total: -86.80 kcal Atomic # 8 Polarization: -60.07 SS G_CDS: -2.50 Total: -62.57 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -84.55 6.23 -78.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293962088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.554 kcal (2) G-P(sol) polarization free energy of solvation -84.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.314 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds