Wall clock time and date at job start Tue Mar 31 2020 18:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34705 * 117.00531 * 2 1 4 4 O 1.21476 * 119.99999 * 0.02562 * 3 2 1 5 5 C 1.47745 * 120.00574 * 180.02562 * 3 2 1 6 6 C 1.39652 * 120.11841 * 359.97438 * 5 3 2 7 7 C 1.37953 * 119.96104 * 180.02562 * 6 5 3 8 8 C 1.38305 * 120.20853 * 359.74284 * 7 6 5 9 9 C 1.50700 * 119.87508 * 180.25552 * 8 7 6 10 10 C 1.52997 * 109.47344 * 265.25684 * 9 8 7 11 11 N 1.46490 * 109.47423 * 180.02562 * 10 9 8 12 12 C 1.34780 * 120.00217 * 180.02562 * 11 10 9 13 13 O 1.21279 * 119.99922 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00138 * 179.97438 * 12 11 10 15 15 C 1.52991 * 109.47159 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47159 * 179.97438 * 15 14 12 17 17 H 1.07994 * 119.99925 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00105 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00054 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00101 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46912 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47246 * 119.99528 * 20 18 16 23 23 H 1.48503 * 109.47030 * 239.99582 * 20 18 16 24 24 C 1.38813 * 120.24653 * 0.51309 * 8 7 6 25 25 O 1.35910 * 119.98021 * 179.76729 * 24 8 7 26 26 C 1.42903 * 117.00276 * 179.72477 * 25 24 8 27 27 C 1.38487 * 120.04107 * 359.48888 * 24 8 7 28 28 H 1.09007 * 109.46775 * 299.99656 * 1 2 3 29 29 H 1.09002 * 109.47285 * 59.99485 * 1 2 3 30 30 H 1.09001 * 109.47851 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.02007 * 0.04049 * 6 5 3 32 32 H 1.07993 * 119.89892 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.46795 * 25.25566 * 9 8 7 34 34 H 1.09000 * 109.46916 * 145.25383 * 9 8 7 35 35 H 1.09007 * 109.46824 * 300.00531 * 10 9 8 36 36 H 1.09003 * 109.46783 * 59.99515 * 10 9 8 37 37 H 0.96999 * 119.99955 * 359.97438 * 11 10 9 38 38 H 1.08995 * 109.47226 * 299.99899 * 14 12 11 39 39 H 1.09000 * 109.46916 * 59.99526 * 14 12 11 40 40 H 1.09000 * 109.47358 * 299.99766 * 15 14 12 41 41 H 1.09000 * 109.47266 * 60.00141 * 15 14 12 42 42 H 0.96998 * 119.99981 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47382 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.46938 * 59.99701 * 26 25 24 45 45 H 1.09004 * 109.46926 * 299.99822 * 26 25 24 46 46 H 1.07999 * 120.10720 * 180.23152 * 27 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.3020 0.1079 -0.0006 7 6 5.6795 0.1839 -0.0006 8 6 6.3085 1.4156 -0.0059 9 6 7.8136 1.4898 -0.0117 10 6 8.3225 1.6376 1.4235 11 7 9.7856 1.7104 1.4179 12 6 10.4583 1.8424 2.5783 13 8 9.8523 1.9015 3.6272 14 6 11.9635 1.9167 2.5725 15 6 12.4723 2.0646 4.0077 16 6 13.9775 2.1383 4.0020 17 1 14.5171 2.0853 3.0680 18 6 14.6656 2.2732 5.1891 19 7 14.0085 2.3382 6.3265 20 14 16.5314 2.3653 5.1819 21 1 17.0262 2.2706 3.7850 22 1 16.9657 3.6556 5.7750 23 1 17.0854 1.2422 5.9801 24 6 5.5585 2.5837 -0.0006 25 8 6.1823 3.7912 -0.0012 26 6 5.3488 4.9520 -0.0016 27 6 4.1751 2.5194 -0.0006 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 3.8140 -0.8556 -0.0008 32 1 6.2685 -0.7213 -0.0002 33 1 8.2206 0.5783 -0.4495 34 1 8.1327 2.3497 -0.6007 35 1 7.9154 2.5491 1.8613 36 1 8.0033 0.7777 2.0125 37 1 10.2703 1.6628 0.5790 38 1 12.3705 1.0055 2.1344 39 1 12.2825 2.7768 1.9838 40 1 12.0653 2.9761 4.4455 41 1 12.1533 1.2048 4.5968 42 1 14.4926 2.4335 7.1616 43 1 5.9716 5.8466 -0.0015 44 1 4.7195 4.9478 0.8884 45 1 4.7195 4.9471 -0.8916 46 1 3.5906 3.4276 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000294324638.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:07 Heat of formation + Delta-G solvation = -149.211276 kcal Electronic energy + Delta-G solvation = -27389.857928 eV Core-core repulsion = 23244.641157 eV Total energy + Delta-G solvation = -4145.216772 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.18685 -40.30319 -39.05157 -37.82322 -36.88258 -35.39649 -33.41045 -32.95533 -30.99837 -30.68805 -29.41874 -28.27384 -27.39873 -25.84937 -24.34461 -22.66955 -22.42725 -21.37629 -21.15875 -19.57763 -18.98376 -17.65557 -16.85661 -16.80877 -16.76328 -16.46721 -16.24051 -15.91297 -15.56417 -15.24503 -15.22624 -14.55619 -14.38321 -14.26768 -13.90156 -13.81563 -13.73732 -13.25605 -12.88847 -12.66352 -12.47142 -12.31989 -12.14559 -11.98007 -11.94861 -11.61421 -11.50715 -11.27009 -11.23348 -11.11909 -10.94918 -10.91893 -10.55775 -9.92270 -9.62942 -9.41718 -9.13234 -8.96739 -8.71952 -8.62450 -8.29594 -5.93631 -3.97859 0.19205 0.94778 2.08292 2.18820 2.88366 3.26631 3.32514 3.34294 3.41082 3.44422 3.60913 4.16776 4.33448 4.46173 4.50374 4.62362 4.66697 4.69497 4.73263 4.83602 4.85272 4.92918 5.02690 5.05598 5.13366 5.21235 5.29787 5.41317 5.51978 5.61375 5.65018 5.75579 5.81698 5.91243 6.05782 6.08222 6.22768 6.27795 6.29334 6.77414 6.92022 6.94130 7.26936 7.77822 7.90174 7.95055 8.10535 8.41916 8.84675 9.11355 9.65581 11.17378 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024670 B = 0.001708 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.707715 B =16388.702671 C =16734.818838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.353 6.353 3 C 0.511 3.489 4 O -0.506 6.506 5 C -0.095 4.095 6 C -0.094 4.094 7 C -0.089 4.089 8 C -0.071 4.071 9 C -0.088 4.088 10 C 0.127 3.873 11 N -0.744 5.744 12 C 0.509 3.491 13 O -0.535 6.535 14 C -0.130 4.130 15 C 0.036 3.964 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.124 3.876 25 O -0.305 6.305 26 C 0.023 3.977 27 C -0.145 4.145 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.104 0.896 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.397 0.603 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.023 0.977 41 H 0.023 0.977 42 H 0.260 0.740 43 H 0.105 0.895 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.853 -3.440 -19.941 32.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.356 3.644 4 O -0.395 6.395 5 C -0.096 4.096 6 C -0.113 4.113 7 C -0.107 4.107 8 C -0.072 4.072 9 C -0.126 4.126 10 C 0.003 3.997 11 N -0.399 5.399 12 C 0.297 3.703 13 O -0.410 6.410 14 C -0.170 4.170 15 C -0.002 4.002 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C 0.079 3.921 25 O -0.218 6.218 26 C -0.071 4.071 27 C -0.163 4.163 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.123 0.877 31 H 0.159 0.841 32 H 0.160 0.840 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.231 0.769 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.123 0.877 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -26.307 -3.030 -18.955 32.566 hybrid contribution 0.591 0.256 -0.329 0.723 sum -25.716 -2.774 -19.284 32.263 Atomic orbital electron populations 1.23320 0.75675 1.03990 1.02748 1.86541 1.23772 1.32425 1.84184 1.21210 0.89109 0.81503 0.72609 1.90836 1.66846 1.36081 1.45758 1.18778 0.88833 0.94376 1.07617 1.21357 0.93721 0.97904 0.98296 1.20968 0.94134 0.96903 0.98724 1.19406 0.95855 0.90607 1.01360 1.20720 0.90073 1.04029 0.97749 1.21145 0.81126 1.02381 0.95048 1.46177 1.06436 1.77466 1.09801 1.21552 0.91540 0.74494 0.82682 1.90670 1.70686 1.48364 1.31323 1.21857 0.88164 1.02433 1.04514 1.18907 0.94881 0.98511 0.87889 1.21273 0.91763 1.50583 0.92811 0.92539 1.25034 0.98376 0.95382 0.95653 1.70014 1.35265 1.49945 0.97630 0.86537 0.85838 0.77575 0.78000 1.19755 1.21049 1.21049 1.18638 0.90023 0.86020 0.97453 1.86152 1.35303 1.11989 1.88354 1.23157 0.96176 0.86259 1.01552 1.21271 0.93275 0.98178 1.03624 0.91669 0.91745 0.87741 0.84101 0.83988 0.89879 0.89442 0.91537 0.91813 0.76946 0.90260 0.90265 0.95826 0.95819 0.93037 0.87690 0.92310 0.92499 0.83875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -2.96 9.81 -40.51 -0.40 -3.36 16 3 C 0.51 5.21 7.90 34.62 0.27 5.48 16 4 O -0.51 -6.25 16.14 -19.25 -0.31 -6.56 16 5 C -0.09 -0.91 5.87 -105.00 -0.62 -1.52 16 6 C -0.09 -0.75 9.61 -39.16 -0.38 -1.13 16 7 C -0.09 -0.69 9.65 -39.66 -0.38 -1.08 16 8 C -0.07 -0.65 5.15 -104.38 -0.54 -1.19 16 9 C -0.09 -0.78 5.17 -27.88 -0.14 -0.92 16 10 C 0.13 1.61 5.66 -4.05 -0.02 1.58 16 11 N -0.74 -10.40 5.56 -60.30 -0.33 -10.73 16 12 C 0.51 9.94 7.83 -10.98 -0.09 9.85 16 13 O -0.54 -12.96 15.98 5.56 0.09 -12.87 16 14 C -0.13 -2.65 5.64 -27.89 -0.16 -2.81 16 15 C 0.04 0.97 4.26 -27.89 -0.12 0.85 16 16 C -0.53 -15.04 9.11 -34.44 -0.31 -15.35 16 17 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.66 13.29 55.43 0.74 -26.92 16 20 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.12 1.24 6.65 -39.28 -0.26 0.97 16 25 O -0.31 -3.04 9.61 -19.46 -0.19 -3.23 16 26 C 0.02 0.16 9.81 101.05 0.99 1.15 16 27 C -0.14 -1.40 8.58 -39.01 -0.33 -1.74 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.10 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.14 0.87 7.61 -52.49 -0.40 0.47 16 32 H 0.14 0.79 8.06 -52.49 -0.42 0.36 16 33 H 0.08 0.58 8.05 -51.93 -0.42 0.16 16 34 H 0.09 0.76 7.68 -51.93 -0.40 0.37 16 35 H 0.07 0.97 8.14 -51.92 -0.42 0.55 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.40 4.19 8.47 -40.82 -0.35 3.84 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 45 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 46 H 0.14 1.30 5.88 -52.49 -0.31 0.99 16 LS Contribution 396.61 15.07 5.98 5.98 Total: -1.00 -37.55 396.61 -7.42 -44.97 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -6.85 Total: -1.02 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: -1.12 Total: -3.00 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.40 Total: -37.65 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: -0.81 Total: -26.02 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -37.55 -7.42 -44.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294324638.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.243 kcal (2) G-P(sol) polarization free energy of solvation -37.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds