Wall clock time and date at job start Tue Mar 31 2020 18:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34705 * 117.00531 * 2 1 4 4 O 1.21476 * 119.99999 * 0.02562 * 3 2 1 5 5 C 1.47745 * 120.00574 * 180.02562 * 3 2 1 6 6 C 1.39652 * 120.11841 * 359.97438 * 5 3 2 7 7 C 1.37953 * 119.96104 * 180.02562 * 6 5 3 8 8 C 1.38305 * 120.20853 * 359.74284 * 7 6 5 9 9 C 1.50700 * 119.87508 * 180.25552 * 8 7 6 10 10 C 1.52997 * 109.47344 * 265.25684 * 9 8 7 11 11 N 1.46490 * 109.47423 * 180.02562 * 10 9 8 12 12 C 1.34780 * 120.00217 * 180.02562 * 11 10 9 13 13 O 1.21279 * 119.99922 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00138 * 179.97438 * 12 11 10 15 15 C 1.52991 * 109.47159 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47159 * 179.97438 * 15 14 12 17 17 H 1.07994 * 119.99925 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00105 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00054 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00101 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46912 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47246 * 119.99528 * 20 18 16 23 23 H 1.48503 * 109.47030 * 239.99582 * 20 18 16 24 24 C 1.38813 * 120.24653 * 0.51309 * 8 7 6 25 25 O 1.35910 * 119.98021 * 179.76729 * 24 8 7 26 26 C 1.42903 * 117.00276 * 179.72477 * 25 24 8 27 27 C 1.38487 * 120.04107 * 359.48888 * 24 8 7 28 28 H 1.09007 * 109.46775 * 299.99656 * 1 2 3 29 29 H 1.09002 * 109.47285 * 59.99485 * 1 2 3 30 30 H 1.09001 * 109.47851 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.02007 * 0.04049 * 6 5 3 32 32 H 1.07993 * 119.89892 * 179.97438 * 7 6 5 33 33 H 1.09000 * 109.46795 * 25.25566 * 9 8 7 34 34 H 1.09000 * 109.46916 * 145.25383 * 9 8 7 35 35 H 1.09007 * 109.46824 * 300.00531 * 10 9 8 36 36 H 1.09003 * 109.46783 * 59.99515 * 10 9 8 37 37 H 0.96999 * 119.99955 * 359.97438 * 11 10 9 38 38 H 1.08995 * 109.47226 * 299.99899 * 14 12 11 39 39 H 1.09000 * 109.46916 * 59.99526 * 14 12 11 40 40 H 1.09000 * 109.47358 * 299.99766 * 15 14 12 41 41 H 1.09000 * 109.47266 * 60.00141 * 15 14 12 42 42 H 0.96998 * 119.99981 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47382 * 179.97438 * 26 25 24 44 44 H 1.09001 * 109.46938 * 59.99701 * 26 25 24 45 45 H 1.09004 * 109.46926 * 299.99822 * 26 25 24 46 46 H 1.07999 * 120.10720 * 180.23152 * 27 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5390 1.2775 -0.0006 6 6 4.3020 0.1079 -0.0006 7 6 5.6795 0.1839 -0.0006 8 6 6.3085 1.4156 -0.0059 9 6 7.8136 1.4898 -0.0117 10 6 8.3225 1.6376 1.4235 11 7 9.7856 1.7104 1.4179 12 6 10.4583 1.8424 2.5783 13 8 9.8523 1.9015 3.6272 14 6 11.9635 1.9167 2.5725 15 6 12.4723 2.0646 4.0077 16 6 13.9775 2.1383 4.0020 17 1 14.5171 2.0853 3.0680 18 6 14.6656 2.2732 5.1891 19 7 14.0085 2.3382 6.3265 20 14 16.5314 2.3653 5.1819 21 1 17.0262 2.2706 3.7850 22 1 16.9657 3.6556 5.7750 23 1 17.0854 1.2422 5.9801 24 6 5.5585 2.5837 -0.0006 25 8 6.1823 3.7912 -0.0012 26 6 5.3488 4.9520 -0.0016 27 6 4.1751 2.5194 -0.0006 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3635 -1.0276 -0.0005 31 1 3.8140 -0.8556 -0.0008 32 1 6.2685 -0.7213 -0.0002 33 1 8.2206 0.5783 -0.4495 34 1 8.1327 2.3497 -0.6007 35 1 7.9154 2.5491 1.8613 36 1 8.0033 0.7777 2.0125 37 1 10.2703 1.6628 0.5790 38 1 12.3705 1.0055 2.1344 39 1 12.2825 2.7768 1.9838 40 1 12.0653 2.9761 4.4455 41 1 12.1533 1.2048 4.5968 42 1 14.4926 2.4335 7.1616 43 1 5.9716 5.8466 -0.0015 44 1 4.7195 4.9478 0.8884 45 1 4.7195 4.9471 -0.8916 46 1 3.5906 3.4276 -0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000294324638.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:29:06 Heat of formation + Delta-G solvation = -174.673291 kcal Electronic energy + Delta-G solvation = -27390.962044 eV Core-core repulsion = 23244.641157 eV Total energy + Delta-G solvation = -4146.320887 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.89194 -41.03376 -40.54879 -38.49758 -37.61858 -36.54667 -35.51852 -33.99021 -32.91039 -31.34680 -30.35899 -28.90816 -28.09541 -27.53816 -25.45150 -23.63792 -23.30237 -22.87385 -21.90084 -21.09811 -19.68024 -18.79306 -18.36836 -17.49603 -17.47599 -17.41070 -17.17089 -17.13764 -16.63536 -16.57378 -16.45451 -16.12976 -15.35428 -15.08879 -14.80136 -14.67001 -14.51888 -14.46984 -14.14467 -13.96589 -13.75181 -13.21622 -13.16036 -13.05046 -12.84347 -12.82850 -12.71081 -12.42212 -12.32216 -12.15552 -12.05513 -11.88820 -11.88707 -11.70304 -11.60743 -11.25926 -10.72253 -10.56049 -10.07513 -10.02179 -9.32043 -8.16095 -6.30075 -0.52299 0.29694 1.33924 1.43909 1.45364 1.56183 1.58739 1.76599 2.25949 2.29211 2.46628 2.64320 3.17051 3.50110 3.69089 3.78180 3.99972 4.01991 4.06661 4.20253 4.21355 4.27240 4.30046 4.31386 4.32619 4.45012 4.56418 4.60602 4.64671 4.67241 4.69778 4.75320 4.84629 5.05046 5.07900 5.15132 5.18109 5.24224 5.37576 5.49504 5.56053 5.60886 5.66442 5.88310 6.20076 6.25436 6.54556 6.68302 6.89167 7.39667 7.41925 8.96862 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.024670 B = 0.001708 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.707715 B =16388.702671 C =16734.818838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.353 6.353 3 C 0.511 3.489 4 O -0.537 6.537 5 C -0.109 4.109 6 C -0.089 4.089 7 C -0.083 4.083 8 C -0.082 4.082 9 C -0.074 4.074 10 C 0.129 3.871 11 N -0.716 5.716 12 C 0.509 3.491 13 O -0.593 6.593 14 C -0.119 4.119 15 C 0.039 3.961 16 C -0.541 4.541 17 H 0.078 0.922 18 C -0.009 4.009 19 N -0.939 5.939 20 Si 0.975 3.025 21 H -0.251 1.251 22 H -0.282 1.282 23 H -0.281 1.281 24 C 0.112 3.888 25 O -0.322 6.322 26 C 0.017 3.983 27 C -0.155 4.155 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.137 0.863 31 H 0.161 0.839 32 H 0.171 0.829 33 H 0.113 0.887 34 H 0.091 0.909 35 H 0.042 0.958 36 H 0.056 0.944 37 H 0.419 0.581 38 H 0.108 0.892 39 H 0.105 0.895 40 H -0.020 1.020 41 H -0.018 1.018 42 H 0.262 0.738 43 H 0.119 0.881 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.732 -4.844 -22.631 33.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.269 6.269 3 C 0.357 3.643 4 O -0.428 6.428 5 C -0.110 4.110 6 C -0.107 4.107 7 C -0.101 4.101 8 C -0.084 4.084 9 C -0.111 4.111 10 C 0.005 3.995 11 N -0.369 5.369 12 C 0.298 3.702 13 O -0.474 6.474 14 C -0.158 4.158 15 C 0.002 3.998 16 C -0.579 4.579 17 H 0.096 0.904 18 C -0.206 4.206 19 N -0.579 5.579 20 Si 0.799 3.201 21 H -0.175 1.175 22 H -0.208 1.208 23 H -0.207 1.207 24 C 0.066 3.934 25 O -0.235 6.235 26 C -0.077 4.077 27 C -0.174 4.174 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.155 0.845 31 H 0.179 0.821 32 H 0.188 0.812 33 H 0.132 0.868 34 H 0.110 0.890 35 H 0.060 0.940 36 H 0.075 0.925 37 H 0.256 0.744 38 H 0.126 0.874 39 H 0.123 0.877 40 H -0.001 1.001 41 H 0.001 0.999 42 H 0.071 0.929 43 H 0.137 0.863 44 H 0.075 0.925 45 H 0.086 0.914 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -25.194 -4.454 -21.737 33.572 hybrid contribution 0.112 0.672 0.498 0.844 sum -25.082 -3.782 -21.240 33.084 Atomic orbital electron populations 1.23627 0.74073 1.06110 1.02660 1.86531 1.25364 1.31329 1.83627 1.21390 0.89420 0.81599 0.71844 1.90814 1.67518 1.37094 1.47408 1.18930 0.88771 0.95012 1.08330 1.21611 0.93905 0.98110 0.97089 1.21307 0.94218 0.97349 0.97201 1.19590 0.96014 0.90942 1.01828 1.20624 0.89840 1.05773 0.94868 1.21199 0.79714 1.00918 0.97702 1.45842 1.07227 1.74849 1.09029 1.21367 0.91335 0.74250 0.83272 1.90658 1.71508 1.51437 1.33748 1.21632 0.89027 1.04921 1.00252 1.18712 0.94933 0.94604 0.91569 1.21769 0.92455 1.49940 0.93748 0.90423 1.26159 1.04545 0.94741 0.95138 1.70194 1.37877 1.51242 0.98601 0.85256 0.78341 0.77475 0.79046 1.17468 1.20761 1.20674 1.18838 0.90198 0.86430 0.97891 1.86114 1.36318 1.12611 1.88492 1.23333 0.96476 0.85892 1.01990 1.21316 0.93425 0.98441 1.04237 0.92007 0.91676 0.84513 0.82092 0.81157 0.86848 0.89002 0.93961 0.92514 0.74351 0.87421 0.87726 1.00138 0.99942 0.92923 0.86312 0.92548 0.91439 0.84151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 113.37 1.20 1.47 16 2 O -0.35 -5.55 9.81 -56.15 -0.55 -6.11 16 3 C 0.51 10.37 7.90 70.34 0.56 10.93 16 4 O -0.54 -13.62 16.14 19.91 0.32 -13.30 16 5 C -0.11 -2.04 5.87 -20.11 -0.12 -2.16 16 6 C -0.09 -1.25 9.61 22.54 0.22 -1.03 16 7 C -0.08 -1.07 9.65 22.22 0.21 -0.86 16 8 C -0.08 -1.37 5.15 -19.71 -0.10 -1.48 16 9 C -0.07 -1.11 5.17 29.85 0.15 -0.96 16 10 C 0.13 3.10 5.66 86.38 0.49 3.58 16 11 N -0.72 -18.62 5.56 -463.07 -2.57 -21.19 16 12 C 0.51 19.76 7.83 87.66 0.69 20.45 16 13 O -0.59 -29.86 15.98 -3.02 -0.05 -29.91 16 14 C -0.12 -4.72 5.64 29.85 0.17 -4.55 16 15 C 0.04 2.22 4.26 29.85 0.13 2.35 16 16 C -0.54 -30.89 9.11 25.60 0.23 -30.66 16 17 H 0.08 4.01 7.74 -2.91 -0.02 3.99 16 18 C -0.01 -0.51 5.46 84.65 0.46 -0.04 16 19 N -0.94 -60.07 13.29 21.45 0.28 -59.79 16 20 Si 0.97 44.39 29.54 68.60 2.03 46.41 16 21 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 C 0.11 2.19 6.65 22.47 0.15 2.33 16 25 O -0.32 -6.40 9.61 -92.54 -0.89 -7.29 16 26 C 0.02 0.25 9.81 113.37 1.11 1.36 16 27 C -0.16 -3.04 8.58 22.64 0.19 -2.85 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.14 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.16 1.55 7.61 -2.91 -0.02 1.53 16 32 H 0.17 1.20 8.06 -2.91 -0.02 1.17 16 33 H 0.11 1.06 8.05 -2.39 -0.02 1.05 16 34 H 0.09 1.36 7.68 -2.39 -0.02 1.34 16 35 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.42 7.34 8.47 -92.71 -0.79 6.56 16 38 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 39 H 0.10 3.64 8.14 -2.39 -0.02 3.62 16 40 H -0.02 -1.27 8.10 -2.39 -0.02 -1.29 16 41 H -0.02 -1.14 8.10 -2.39 -0.02 -1.15 16 42 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 43 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 0.80 7.66 -2.39 -0.02 0.78 16 45 H 0.07 0.78 7.66 -2.38 -0.02 0.76 16 46 H 0.14 2.70 5.88 -2.91 -0.02 2.68 16 Total: -1.00 -86.16 396.61 4.52 -81.64 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 0.21 Total: 11.64 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 5.74 Total: -2.11 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -2.29 Total: -80.98 kcal Atomic # 8 Polarization: -55.43 SS G_CDS: -1.17 Total: -56.60 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -86.16 4.52 -81.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000294324638.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.038 kcal (2) G-P(sol) polarization free energy of solvation -86.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds