Wall clock time and date at job start Tue Mar 31 2020 19:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99803 * 2 1 4 4 O 1.20823 * 120.00215 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99742 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47114 * 304.99616 * 5 3 2 7 7 C 1.53002 * 109.47421 * 64.99658 * 5 3 2 8 8 N 1.46497 * 109.47217 * 185.10717 * 7 5 3 9 9 C 1.34778 * 120.00136 * 186.25052 * 8 7 5 10 10 O 1.21278 * 119.99580 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99882 * 179.97438 * 9 8 7 12 12 C 1.53007 * 109.46819 * 179.97438 * 11 9 8 13 13 H 1.08988 * 109.47305 * 306.09872 * 12 11 9 14 14 C 1.50704 * 109.46640 * 66.09508 * 12 11 9 15 15 H 1.08000 * 119.99887 * 24.85885 * 14 12 11 16 16 C 1.37878 * 119.99909 * 204.85827 * 14 12 11 17 17 N 1.31509 * 119.99726 * 358.14307 * 16 14 12 18 18 Si 1.86800 * 119.99908 * 178.42422 * 16 14 12 19 19 H 1.48503 * 109.46676 * 179.72334 * 18 16 14 20 20 H 1.48502 * 109.47065 * 299.72037 * 18 16 14 21 21 H 1.48504 * 109.47180 * 59.72387 * 18 16 14 22 22 C 1.50693 * 109.46906 * 186.09222 * 12 11 9 23 23 C 1.38239 * 120.00283 * 296.05469 * 22 12 11 24 24 C 1.38234 * 119.99883 * 179.78887 * 23 22 12 25 25 C 1.38233 * 120.00160 * 0.44623 * 24 23 22 26 26 C 1.38235 * 119.99981 * 359.80614 * 25 24 23 27 27 C 1.38231 * 119.99902 * 359.97438 * 26 25 24 28 28 O 1.42898 * 109.47137 * 185.00133 * 5 3 2 29 29 C 1.42900 * 114.00177 * 127.93597 * 28 5 3 30 30 H 1.09000 * 109.47122 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47524 * 300.00461 * 1 2 3 32 32 H 1.09007 * 109.46838 * 60.00363 * 1 2 3 33 33 H 1.09001 * 109.46843 * 65.10899 * 7 5 3 34 34 H 1.08996 * 109.46670 * 305.10859 * 7 5 3 35 35 H 0.97007 * 119.99672 * 6.25359 * 8 7 5 36 36 H 1.08998 * 109.46982 * 60.00768 * 11 9 8 37 37 H 1.08998 * 109.47913 * 300.00234 * 11 9 8 38 38 H 0.97003 * 120.00745 * 355.46734 * 17 16 14 39 39 H 1.08000 * 119.99993 * 0.02562 * 23 22 12 40 40 H 1.08007 * 119.99693 * 180.27467 * 24 23 22 41 41 H 1.08006 * 119.99983 * 179.83219 * 25 24 23 42 42 H 1.07997 * 120.00029 * 179.97438 * 26 25 24 43 43 H 1.08007 * 119.99700 * 179.97438 * 27 26 25 44 44 H 1.09010 * 109.46923 * 183.89697 * 29 28 5 45 45 H 1.08993 * 109.46944 * 303.89218 * 29 28 5 46 46 H 1.08998 * 109.47060 * 63.89937 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9596 0.7055 0.8427 7 6 4.1081 0.6924 -1.3064 8 7 5.5717 0.6568 -1.2554 9 6 6.2756 0.2986 -2.3476 10 8 5.6971 0.0062 -3.3727 11 6 7.7812 0.2625 -2.2953 12 6 8.3285 -0.1731 -3.6562 13 1 7.8660 -1.1155 -3.9490 14 6 8.0137 0.8821 -4.6851 15 1 7.8570 1.9057 -4.3785 16 6 7.9257 0.5405 -6.0181 17 7 8.1523 -0.6986 -6.3956 18 14 7.4922 1.8397 -7.2884 19 1 7.4683 1.2226 -8.6390 20 1 6.1550 2.4071 -6.9797 21 1 8.5086 2.9219 -7.2565 22 6 9.8216 -0.3538 -3.5626 23 6 10.6331 0.7303 -3.2849 24 6 12.0024 0.5635 -3.1948 25 6 12.5610 -0.6855 -3.3914 26 6 11.7500 -1.7686 -3.6742 27 6 10.3803 -1.6028 -3.7599 28 8 3.9717 2.6401 0.1179 29 6 4.9105 2.8795 1.1684 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 3.7887 1.3155 -2.1418 34 1 3.7244 -0.3190 -1.4399 35 1 6.0343 0.8910 -0.4356 36 1 8.1013 -0.4463 -1.5317 37 1 8.1603 1.2550 -2.0516 38 1 8.4454 -1.3575 -5.7469 39 1 10.1969 1.7068 -3.1346 40 1 12.6360 1.4098 -2.9734 41 1 13.6311 -0.8152 -3.3236 42 1 12.1864 -2.7444 -3.8283 43 1 9.7467 -2.4490 -3.9813 44 1 5.1150 3.9480 1.2364 45 1 4.4959 2.5281 2.1132 46 1 5.8366 2.3450 0.9568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347832645.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:56 Heat of formation + Delta-G solvation = -141.209554 kcal Electronic energy + Delta-G solvation = -28872.287421 eV Core-core repulsion = 24727.417630 eV Total energy + Delta-G solvation = -4144.869791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.90356 -39.33905 -38.54119 -38.03882 -36.57280 -34.66700 -34.00461 -31.47880 -30.85752 -30.11731 -28.95653 -27.86081 -26.69812 -25.25748 -23.88382 -22.71459 -21.67212 -21.35053 -20.34962 -19.58179 -18.08355 -17.51272 -17.26382 -16.83766 -16.51957 -16.16375 -15.94406 -15.42055 -15.11485 -14.73579 -14.60962 -14.26244 -14.06236 -13.63865 -13.56234 -13.47940 -13.25288 -12.99922 -12.65907 -12.42304 -12.36414 -12.26308 -12.07096 -11.86140 -11.60976 -11.42867 -11.09140 -10.94335 -10.89224 -10.71140 -10.44114 -10.16172 -10.07836 -10.02647 -9.67845 -9.11051 -8.75138 -8.62730 -8.24857 -8.14693 -7.65425 -6.21311 -3.90456 1.81583 2.11310 2.18324 2.23822 3.32945 3.44353 3.52039 3.57039 3.62543 3.72711 4.36419 4.42907 4.47736 4.60876 4.68172 4.82460 4.91052 4.94526 5.03469 5.24301 5.35891 5.40126 5.48442 5.58718 5.59768 5.62694 5.75382 5.85546 5.96907 6.01472 6.05189 6.15431 6.30693 6.40752 6.56948 6.64655 6.69503 6.78035 6.91708 7.20015 7.22029 7.37065 7.44296 7.72633 7.84640 7.89166 8.22550 8.52061 8.92441 8.99078 9.78509 11.18484 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.002993 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.909494 B = 9352.440960 C =10365.943623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.355 6.355 3 C 0.457 3.543 4 O -0.483 6.483 5 C 0.091 3.909 6 H 0.108 0.892 7 C 0.117 3.883 8 N -0.746 5.746 9 C 0.515 3.485 10 O -0.493 6.493 11 C -0.115 4.115 12 C 0.072 3.928 13 H 0.050 0.950 14 C -0.567 4.567 15 H 0.045 0.955 16 C 0.031 3.969 17 N -0.906 5.906 18 Si 1.061 2.939 19 H -0.284 1.284 20 H -0.289 1.289 21 H -0.290 1.290 22 C -0.032 4.032 23 C -0.107 4.107 24 C -0.130 4.130 25 C -0.152 4.152 26 C -0.125 4.125 27 C -0.129 4.129 28 O -0.351 6.351 29 C 0.026 3.974 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.390 0.610 36 H 0.066 0.934 37 H 0.080 0.920 38 H 0.270 0.730 39 H 0.115 0.885 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.107 0.893 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.046 0.954 46 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.412 0.730 18.117 18.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.272 6.272 3 C 0.297 3.703 4 O -0.368 6.368 5 C 0.030 3.970 6 H 0.125 0.875 7 C -0.008 4.008 8 N -0.403 5.403 9 C 0.302 3.698 10 O -0.364 6.364 11 C -0.155 4.155 12 C 0.053 3.947 13 H 0.068 0.932 14 C -0.605 4.605 15 H 0.064 0.936 16 C -0.174 4.174 17 N -0.542 5.542 18 Si 0.890 3.110 19 H -0.209 1.209 20 H -0.215 1.215 21 H -0.217 1.217 22 C -0.033 4.033 23 C -0.125 4.125 24 C -0.148 4.148 25 C -0.171 4.171 26 C -0.143 4.143 27 C -0.147 4.147 28 O -0.269 6.269 29 C -0.070 4.070 30 H 0.123 0.877 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.102 0.898 34 H 0.104 0.896 35 H 0.224 0.776 36 H 0.085 0.915 37 H 0.099 0.901 38 H 0.082 0.918 39 H 0.133 0.867 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.129 0.871 44 H 0.115 0.885 45 H 0.065 0.935 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.467 1.180 15.557 16.889 hybrid contribution 0.477 -0.051 2.192 2.243 sum -5.990 1.129 17.749 18.767 Atomic orbital electron populations 1.23322 0.75739 1.03996 1.02726 1.86508 1.23848 1.32765 1.84065 1.23598 0.91534 0.81863 0.73277 1.90694 1.66503 1.36290 1.43313 1.21787 0.87803 0.86187 1.01186 0.87459 1.21456 0.82402 1.01519 0.95378 1.46075 1.05290 1.73518 1.15386 1.20891 0.90471 0.76275 0.82203 1.90769 1.71357 1.44868 1.29416 1.21661 0.90443 1.02221 1.01204 1.17859 0.86370 0.99481 0.90974 0.93237 1.21542 1.51854 0.94207 0.92874 0.93620 1.25573 0.94061 0.99678 0.98116 1.70741 1.42177 1.02595 1.38649 0.83671 0.76352 0.74782 0.76230 1.20922 1.21514 1.21671 1.20831 0.98888 0.91620 0.91970 1.20922 0.92639 0.98787 1.00200 1.21013 0.95308 0.96630 1.01881 1.20826 0.98564 0.93491 1.04175 1.20966 0.94060 0.98045 1.01204 1.21074 0.94516 0.97438 1.01694 1.88111 1.62068 1.23041 1.53669 1.23052 0.91520 1.03329 0.89127 0.87735 0.91859 0.91556 0.89815 0.89604 0.77611 0.91523 0.90123 0.91833 0.86700 0.87456 0.87595 0.87456 0.87127 0.88518 0.93540 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.28 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.75 10.53 -39.26 -0.41 -4.17 16 3 C 0.46 5.61 7.29 36.01 0.26 5.87 16 4 O -0.48 -7.34 16.26 -25.46 -0.41 -7.75 16 5 C 0.09 0.98 2.79 -27.88 -0.08 0.90 16 6 H 0.11 0.80 7.60 -51.93 -0.39 0.40 16 7 C 0.12 1.58 5.33 -4.04 -0.02 1.56 16 8 N -0.75 -10.51 5.50 -60.30 -0.33 -10.84 16 9 C 0.51 9.96 7.59 -10.99 -0.08 9.88 16 10 O -0.49 -12.18 15.00 5.56 0.08 -12.10 16 11 C -0.11 -2.15 4.93 -27.88 -0.14 -2.29 16 12 C 0.07 1.70 1.25 -92.92 -0.12 1.59 16 13 H 0.05 1.32 6.45 -51.94 -0.34 0.98 16 14 C -0.57 -15.37 6.44 -34.44 -0.22 -15.59 16 15 H 0.05 1.25 7.81 -52.49 -0.41 0.84 16 16 C 0.03 0.90 5.46 -17.82 -0.10 0.80 16 17 N -0.91 -27.62 13.60 55.43 0.75 -26.87 16 18 Si 1.06 26.40 29.90 -169.99 -5.08 21.32 16 19 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.03 -0.71 4.62 -104.63 -0.48 -1.19 16 23 C -0.11 -2.15 8.88 -39.58 -0.35 -2.51 16 24 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 25 C -0.15 -2.61 10.05 -39.58 -0.40 -3.00 16 26 C -0.12 -2.26 10.05 -39.59 -0.40 -2.65 16 27 C -0.13 -2.66 9.22 -39.58 -0.37 -3.03 16 28 O -0.35 -4.25 9.83 -55.14 -0.54 -4.79 16 29 C 0.03 0.20 10.65 101.05 1.08 1.28 16 30 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.45 8.13 -51.93 -0.42 0.03 16 32 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 33 H 0.08 1.36 8.12 -51.93 -0.42 0.94 16 34 H 0.09 1.13 8.11 -51.93 -0.42 0.71 16 35 H 0.39 4.12 7.01 -40.82 -0.29 3.84 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.08 1.40 7.85 -51.93 -0.41 1.00 16 38 H 0.27 8.09 6.22 -40.82 -0.25 7.83 16 39 H 0.11 2.24 7.79 -52.49 -0.41 1.83 16 40 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 41 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 42 H 0.11 1.66 8.06 -52.49 -0.42 1.23 16 43 H 0.11 2.26 7.95 -52.48 -0.42 1.84 16 44 H 0.10 0.68 8.14 -51.92 -0.42 0.26 16 45 H 0.05 0.28 8.11 -51.93 -0.42 -0.14 16 46 H 0.05 0.32 6.75 -51.93 -0.35 -0.03 16 LS Contribution 391.71 15.07 5.90 5.90 Total: -1.00 -36.73 391.71 -7.49 -44.22 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: -6.71 Total: 4.82 kcal Atomic # 6 Polarization: -9.00 SS G_CDS: -0.74 Total: -9.75 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: 0.42 Total: -37.71 kcal Atomic # 8 Polarization: -27.52 SS G_CDS: -1.29 Total: -28.81 kcal Atomic # 14 Polarization: 26.40 SS G_CDS: -5.08 Total: 21.32 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -36.73 -7.49 -44.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347832645.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.988 kcal (2) G-P(sol) polarization free energy of solvation -36.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds