Wall clock time and date at job start Tue Mar 31 2020 19:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99803 * 2 1 4 4 O 1.20823 * 120.00215 * 359.97438 * 3 2 1 5 5 C 1.50700 * 119.99742 * 179.97438 * 3 2 1 6 6 H 1.09002 * 109.47114 * 304.99616 * 5 3 2 7 7 C 1.53002 * 109.47421 * 64.99658 * 5 3 2 8 8 N 1.46497 * 109.47217 * 185.10717 * 7 5 3 9 9 C 1.34778 * 120.00136 * 186.25052 * 8 7 5 10 10 O 1.21278 * 119.99580 * 0.02562 * 9 8 7 11 11 C 1.50698 * 119.99882 * 179.97438 * 9 8 7 12 12 C 1.53007 * 109.46819 * 179.97438 * 11 9 8 13 13 H 1.08988 * 109.47305 * 306.09872 * 12 11 9 14 14 C 1.50704 * 109.46640 * 66.09508 * 12 11 9 15 15 H 1.08000 * 119.99887 * 24.85885 * 14 12 11 16 16 C 1.37878 * 119.99909 * 204.85827 * 14 12 11 17 17 N 1.31509 * 119.99726 * 358.14307 * 16 14 12 18 18 Si 1.86800 * 119.99908 * 178.42422 * 16 14 12 19 19 H 1.48503 * 109.46676 * 179.72334 * 18 16 14 20 20 H 1.48502 * 109.47065 * 299.72037 * 18 16 14 21 21 H 1.48504 * 109.47180 * 59.72387 * 18 16 14 22 22 C 1.50693 * 109.46906 * 186.09222 * 12 11 9 23 23 C 1.38239 * 120.00283 * 296.05469 * 22 12 11 24 24 C 1.38234 * 119.99883 * 179.78887 * 23 22 12 25 25 C 1.38233 * 120.00160 * 0.44623 * 24 23 22 26 26 C 1.38235 * 119.99981 * 359.80614 * 25 24 23 27 27 C 1.38231 * 119.99902 * 359.97438 * 26 25 24 28 28 O 1.42898 * 109.47137 * 185.00133 * 5 3 2 29 29 C 1.42900 * 114.00177 * 127.93597 * 28 5 3 30 30 H 1.09000 * 109.47122 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47524 * 300.00461 * 1 2 3 32 32 H 1.09007 * 109.46838 * 60.00363 * 1 2 3 33 33 H 1.09001 * 109.46843 * 65.10899 * 7 5 3 34 34 H 1.08996 * 109.46670 * 305.10859 * 7 5 3 35 35 H 0.97007 * 119.99672 * 6.25359 * 8 7 5 36 36 H 1.08998 * 109.46982 * 60.00768 * 11 9 8 37 37 H 1.08998 * 109.47913 * 300.00234 * 11 9 8 38 38 H 0.97003 * 120.00745 * 355.46734 * 17 16 14 39 39 H 1.08000 * 119.99993 * 0.02562 * 23 22 12 40 40 H 1.08007 * 119.99693 * 180.27467 * 24 23 22 41 41 H 1.08006 * 119.99983 * 179.83219 * 25 24 23 42 42 H 1.07997 * 120.00029 * 179.97438 * 26 25 24 43 43 H 1.08007 * 119.99700 * 179.97438 * 27 26 25 44 44 H 1.09010 * 109.46923 * 183.89697 * 29 28 5 45 45 H 1.08993 * 109.46944 * 303.89218 * 29 28 5 46 46 H 1.08998 * 109.47060 * 63.89937 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9596 0.7055 0.8427 7 6 4.1081 0.6924 -1.3064 8 7 5.5717 0.6568 -1.2554 9 6 6.2756 0.2986 -2.3476 10 8 5.6971 0.0062 -3.3727 11 6 7.7812 0.2625 -2.2953 12 6 8.3285 -0.1731 -3.6562 13 1 7.8660 -1.1155 -3.9490 14 6 8.0137 0.8821 -4.6851 15 1 7.8570 1.9057 -4.3785 16 6 7.9257 0.5405 -6.0181 17 7 8.1523 -0.6986 -6.3956 18 14 7.4922 1.8397 -7.2884 19 1 7.4683 1.2226 -8.6390 20 1 6.1550 2.4071 -6.9797 21 1 8.5086 2.9219 -7.2565 22 6 9.8216 -0.3538 -3.5626 23 6 10.6331 0.7303 -3.2849 24 6 12.0024 0.5635 -3.1948 25 6 12.5610 -0.6855 -3.3914 26 6 11.7500 -1.7686 -3.6742 27 6 10.3803 -1.6028 -3.7599 28 8 3.9717 2.6401 0.1179 29 6 4.9105 2.8795 1.1684 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 3.7887 1.3155 -2.1418 34 1 3.7244 -0.3190 -1.4399 35 1 6.0343 0.8910 -0.4356 36 1 8.1013 -0.4463 -1.5317 37 1 8.1603 1.2550 -2.0516 38 1 8.4454 -1.3575 -5.7469 39 1 10.1969 1.7068 -3.1346 40 1 12.6360 1.4098 -2.9734 41 1 13.6311 -0.8152 -3.3236 42 1 12.1864 -2.7444 -3.8283 43 1 9.7467 -2.4490 -3.9813 44 1 5.1150 3.9480 1.2364 45 1 4.4959 2.5281 2.1132 46 1 5.8366 2.3450 0.9568 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347832645.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:56 Heat of formation + Delta-G solvation = -165.815568 kcal Electronic energy + Delta-G solvation = -28873.354418 eV Core-core repulsion = 24727.417630 eV Total energy + Delta-G solvation = -4145.936788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.84640 -40.80476 -39.87992 -39.14004 -37.52672 -36.24397 -35.54093 -33.31950 -32.03995 -31.58085 -30.36139 -28.61664 -27.60700 -26.81222 -25.31245 -24.24312 -23.16299 -22.30539 -21.81886 -21.14309 -19.09237 -18.82763 -18.41188 -18.14496 -17.84614 -17.32185 -17.02878 -16.74171 -16.46822 -15.84261 -15.74604 -15.65008 -15.56025 -15.37640 -14.76902 -14.59172 -14.36655 -14.27655 -14.04006 -14.02414 -13.82762 -13.43599 -13.15586 -13.06416 -12.89871 -12.65322 -12.61831 -12.34652 -12.06998 -11.94498 -11.90187 -11.83844 -11.70586 -11.47239 -11.01501 -10.75795 -10.51259 -10.37804 -10.08665 -9.61668 -9.25030 -8.42521 -6.09607 0.70326 0.75639 0.85494 1.30935 1.48626 1.58179 1.73946 1.86322 2.22799 2.62462 2.73588 3.12955 3.38567 3.42671 3.60986 3.65661 4.06814 4.15666 4.24583 4.28707 4.30330 4.31498 4.32608 4.41980 4.46950 4.50644 4.52581 4.62414 4.67057 4.68339 4.84672 4.85638 4.89460 5.10684 5.16567 5.26248 5.41090 5.43086 5.47062 5.77221 5.84162 5.84529 5.97508 6.25932 6.32765 6.42575 6.53375 6.63028 6.80872 7.47078 7.65464 8.98114 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012225 B = 0.002993 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.909494 B = 9352.440960 C =10365.943623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.459 3.541 4 O -0.518 6.518 5 C 0.100 3.900 6 H 0.151 0.849 7 C 0.119 3.881 8 N -0.719 5.719 9 C 0.514 3.486 10 O -0.558 6.558 11 C -0.110 4.110 12 C 0.073 3.927 13 H 0.006 0.994 14 C -0.557 4.557 15 H 0.038 0.962 16 C -0.025 4.025 17 N -0.944 5.944 18 Si 1.095 2.905 19 H -0.288 1.288 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.055 4.055 23 C -0.122 4.122 24 C -0.125 4.125 25 C -0.144 4.144 26 C -0.126 4.126 27 C -0.151 4.151 28 O -0.382 6.382 29 C 0.015 3.985 30 H 0.135 0.865 31 H 0.070 0.930 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.090 0.910 35 H 0.412 0.588 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.261 0.739 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.146 0.854 42 H 0.134 0.866 43 H 0.095 0.905 44 H 0.101 0.899 45 H 0.068 0.932 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 1.339 20.693 21.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.272 6.272 3 C 0.301 3.699 4 O -0.406 6.406 5 C 0.040 3.960 6 H 0.168 0.832 7 C -0.006 4.006 8 N -0.376 5.376 9 C 0.301 3.699 10 O -0.434 6.434 11 C -0.149 4.149 12 C 0.054 3.946 13 H 0.024 0.976 14 C -0.595 4.595 15 H 0.056 0.944 16 C -0.223 4.223 17 N -0.582 5.582 18 Si 0.920 3.080 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.192 1.192 22 C -0.056 4.056 23 C -0.140 4.140 24 C -0.143 4.143 25 C -0.162 4.162 26 C -0.144 4.144 27 C -0.170 4.170 28 O -0.300 6.300 29 C -0.081 4.081 30 H 0.153 0.847 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.069 0.931 34 H 0.108 0.892 35 H 0.250 0.750 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.071 0.929 39 H 0.133 0.867 40 H 0.160 0.840 41 H 0.163 0.837 42 H 0.152 0.848 43 H 0.114 0.886 44 H 0.120 0.880 45 H 0.086 0.914 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.401 1.807 18.222 18.833 hybrid contribution -0.148 -0.270 1.532 1.563 sum -4.548 1.538 19.754 20.329 Atomic orbital electron populations 1.23628 0.74191 1.06059 1.02716 1.86506 1.25427 1.31829 1.83452 1.23879 0.92067 0.81760 0.72221 1.90676 1.67333 1.37469 1.45141 1.21723 0.86981 0.86458 1.00804 0.83228 1.21422 0.81663 1.01384 0.96106 1.45706 1.05667 1.71353 1.14856 1.21052 0.90933 0.75558 0.82338 1.90752 1.72428 1.48128 1.32119 1.21573 0.89971 1.03914 0.99489 1.17686 0.88043 0.96328 0.92534 0.97603 1.21820 1.49667 0.94540 0.93488 0.94367 1.26663 0.94542 1.00480 1.00651 1.70818 1.45391 1.03410 1.38570 0.83223 0.76729 0.73732 0.74326 1.21409 1.21467 1.19153 1.20597 0.97584 0.92975 0.94396 1.21014 0.93904 0.98073 1.01015 1.21404 0.94487 0.98202 1.00187 1.21304 1.00451 0.92603 1.01860 1.21293 0.92894 0.99999 1.00171 1.21128 0.95997 0.96867 1.02987 1.88088 1.63085 1.23467 1.55393 1.23336 0.91487 1.04168 0.89063 0.84666 0.91152 0.92367 0.93148 0.89244 0.75040 0.88234 0.88288 0.92872 0.86701 0.83982 0.83655 0.84807 0.88646 0.88048 0.91373 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 113.37 1.20 1.59 16 2 O -0.36 -7.16 10.53 -51.41 -0.54 -7.70 16 3 C 0.46 10.97 7.29 71.24 0.52 11.49 16 4 O -0.52 -15.81 16.26 28.39 0.46 -15.34 16 5 C 0.10 2.02 2.79 29.85 0.08 2.11 16 6 H 0.15 1.71 7.60 -2.39 -0.02 1.69 16 7 C 0.12 3.19 5.33 86.38 0.46 3.65 16 8 N -0.72 -19.53 5.50 -463.07 -2.55 -22.08 16 9 C 0.51 20.09 7.59 87.66 0.66 20.75 16 10 O -0.56 -28.90 15.00 -3.02 -0.05 -28.95 16 11 C -0.11 -4.06 4.93 29.85 0.15 -3.91 16 12 C 0.07 3.56 1.25 -12.28 -0.02 3.54 16 13 H 0.01 0.33 6.45 -2.39 -0.02 0.31 16 14 C -0.56 -31.06 6.44 25.60 0.16 -30.89 16 15 H 0.04 2.12 7.81 -2.91 -0.02 2.10 16 16 C -0.02 -1.48 5.46 84.66 0.46 -1.02 16 17 N -0.94 -60.16 13.60 21.45 0.29 -59.87 16 18 Si 1.09 54.54 29.90 68.60 2.05 56.59 16 19 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 C -0.05 -2.40 4.62 -19.87 -0.09 -2.49 16 23 C -0.12 -4.70 8.88 22.27 0.20 -4.50 16 24 C -0.13 -3.97 10.05 22.27 0.22 -3.75 16 25 C -0.14 -4.36 10.05 22.27 0.22 -4.13 16 26 C -0.13 -4.27 10.05 22.27 0.22 -4.05 16 27 C -0.15 -6.30 9.22 22.27 0.21 -6.09 16 28 O -0.38 -8.73 9.83 -129.95 -1.28 -10.00 16 29 C 0.01 0.19 10.65 113.37 1.21 1.40 16 30 H 0.14 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 32 H 0.06 0.95 8.13 -2.38 -0.02 0.93 16 33 H 0.05 1.71 8.12 -2.39 -0.02 1.69 16 34 H 0.09 2.35 8.11 -2.39 -0.02 2.33 16 35 H 0.41 7.60 7.01 -92.70 -0.65 6.95 16 36 H 0.10 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.10 3.29 7.85 -2.39 -0.02 3.28 16 38 H 0.26 16.57 6.22 -92.71 -0.58 15.99 16 39 H 0.11 4.32 7.79 -2.91 -0.02 4.29 16 40 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 41 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 42 H 0.13 3.75 8.06 -2.91 -0.02 3.73 16 43 H 0.10 4.12 7.95 -2.91 -0.02 4.10 16 44 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 45 H 0.07 0.60 8.11 -2.39 -0.02 0.58 16 46 H 0.06 0.61 6.75 -2.39 -0.02 0.60 16 Total: -1.00 -85.58 391.71 4.80 -80.78 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.53 Total: 22.90 kcal Atomic # 6 Polarization: -22.19 SS G_CDS: 5.87 Total: -16.31 kcal Atomic # 7 Polarization: -79.70 SS G_CDS: -2.25 Total: -81.95 kcal Atomic # 8 Polarization: -60.60 SS G_CDS: -1.40 Total: -62.00 kcal Atomic # 14 Polarization: 54.54 SS G_CDS: 2.05 Total: 56.59 kcal Total: -85.58 4.80 -80.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347832645.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.039 kcal (2) G-P(sol) polarization free energy of solvation -85.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds