Wall clock time and date at job start Tue Mar 31 2020 19:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99803 * 2 1 4 4 C 1.52995 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47433 * 174.99657 * 4 3 2 6 6 N 1.46505 * 109.47077 * 294.99518 * 4 3 2 7 7 C 1.34770 * 120.00096 * 205.00267 * 6 4 3 8 8 O 1.21282 * 120.00471 * 359.97438 * 7 6 4 9 9 C 1.50700 * 120.00252 * 179.97438 * 7 6 4 10 10 C 1.52994 * 109.47505 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47674 * 305.00018 * 10 9 7 12 12 C 1.50703 * 109.47113 * 64.99927 * 10 9 7 13 13 H 1.08004 * 120.00335 * 234.68120 * 12 10 9 14 14 C 1.37878 * 120.00054 * 54.67764 * 12 10 9 15 15 N 1.31520 * 119.99983 * 4.87392 * 14 12 10 16 16 Si 1.86799 * 120.00119 * 184.87211 * 14 12 10 17 17 H 1.48503 * 109.46824 * 90.00377 * 16 14 12 18 18 H 1.48506 * 109.46963 * 209.99682 * 16 14 12 19 19 H 1.48492 * 109.47102 * 330.00222 * 16 14 12 20 20 C 1.50702 * 109.47489 * 184.99687 * 10 9 7 21 21 C 1.38228 * 120.00094 * 151.48717 * 20 10 9 22 22 C 1.38237 * 119.99925 * 179.79258 * 21 20 10 23 23 C 1.38241 * 119.99832 * 0.43945 * 22 21 20 24 24 C 1.38232 * 119.99978 * 359.81479 * 23 22 21 25 25 C 1.38232 * 120.00028 * 359.97243 * 24 23 22 26 26 C 1.50699 * 109.47489 * 54.99419 * 4 3 2 27 27 O 1.20831 * 120.00346 * 240.00444 * 26 4 3 28 28 O 1.34231 * 120.00031 * 60.00002 * 26 4 3 29 29 C 1.45198 * 117.00178 * 180.02562 * 28 26 4 30 30 H 1.09003 * 109.47462 * 300.00036 * 1 2 3 31 31 H 1.08995 * 109.47484 * 60.00810 * 1 2 3 32 32 H 1.09003 * 109.46940 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47687 * 59.99429 * 3 2 1 34 34 H 1.09006 * 109.46686 * 299.99479 * 3 2 1 35 35 H 0.97003 * 119.99743 * 24.99663 * 6 4 3 36 36 H 1.09003 * 109.47082 * 59.99639 * 9 7 6 37 37 H 1.09003 * 109.46891 * 300.00039 * 9 7 6 38 38 H 0.97002 * 120.00077 * 179.97438 * 15 14 12 39 39 H 1.08004 * 120.00295 * 359.97438 * 21 20 10 40 40 H 1.07997 * 120.00031 * 180.27151 * 22 21 20 41 41 H 1.08002 * 119.99791 * 179.83480 * 23 22 21 42 42 H 1.07998 * 119.99579 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.00254 * 179.97438 * 25 24 23 44 44 H 1.08993 * 109.47370 * 180.02562 * 29 28 26 45 45 H 1.09004 * 109.47266 * 300.00118 * 29 28 26 46 46 H 1.08997 * 109.47098 * 59.99483 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 1 3.9784 2.1766 -0.0890 6 7 3.9756 0.5646 1.2528 7 6 5.2193 0.7949 1.7180 8 8 5.9744 1.5151 1.0999 9 6 5.6720 0.1575 3.0064 10 6 7.1124 0.5781 3.3050 11 1 7.7465 0.3335 2.4529 12 6 7.1601 2.0632 3.5567 13 1 7.8296 2.6869 2.9829 14 6 6.3490 2.6257 4.5193 15 7 5.6044 1.8565 5.2833 16 14 6.3076 4.4803 4.7385 17 1 5.2532 5.0583 3.8669 18 1 6.0100 4.8047 6.1568 19 1 7.6263 5.0523 4.3659 20 6 7.6068 -0.1543 4.5257 21 6 8.9544 -0.4261 4.6701 22 6 9.4085 -1.0942 5.7919 23 6 8.5137 -1.4984 6.7650 24 6 7.1654 -1.2312 6.6181 25 6 6.7119 -0.5593 5.4984 26 6 3.9723 0.3324 -1.1628 27 8 4.5883 -0.6884 -0.9662 28 8 3.6773 0.7071 -2.4175 29 6 4.1293 -0.1626 -3.4888 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6885 1.8463 -0.8901 35 1 3.3718 -0.0117 1.7471 36 1 5.6228 -0.9273 2.9120 37 1 5.0225 0.4812 3.8197 38 1 5.0340 2.2522 5.9608 39 1 9.6530 -0.1140 3.9078 40 1 10.4619 -1.3027 5.9067 41 1 8.8682 -2.0227 7.6402 42 1 6.4665 -1.5467 7.3786 43 1 5.6585 -0.3509 5.3834 44 1 3.8263 0.2556 -4.4486 45 1 5.2157 -0.2454 -3.4556 46 1 3.6857 -1.1507 -3.3662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356673874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:12 Heat of formation + Delta-G solvation = -132.556152 kcal Electronic energy + Delta-G solvation = -29750.962443 eV Core-core repulsion = 25606.467891 eV Total energy + Delta-G solvation = -4144.494551 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.53648 -38.94578 -38.20256 -37.77663 -36.27085 -34.55616 -33.92993 -31.11562 -30.45867 -29.75549 -28.26885 -27.75366 -26.56942 -25.65696 -23.94534 -22.63756 -21.46933 -20.76873 -20.00842 -19.23555 -17.75170 -17.08351 -16.73805 -16.48827 -16.22498 -15.90574 -15.64463 -15.58444 -15.11695 -14.90963 -14.26360 -14.04810 -13.81692 -13.67078 -13.32451 -13.06150 -12.81445 -12.63262 -12.54007 -12.19149 -12.04257 -11.82804 -11.65249 -11.53892 -11.44834 -11.35296 -10.89601 -10.80145 -10.69964 -10.46180 -10.34441 -10.13389 -9.94042 -9.89507 -9.26809 -9.16604 -8.85222 -8.70933 -8.38624 -7.76278 -7.40128 -5.95429 -4.05350 2.42784 2.53886 2.62553 2.65658 3.30928 3.37007 3.43118 3.46143 3.64283 3.81928 4.44306 4.63057 4.83470 5.01911 5.08013 5.11187 5.13658 5.19289 5.22427 5.26511 5.32555 5.36409 5.47806 5.52990 5.85154 5.92336 6.00836 6.07735 6.43163 6.46366 6.50055 6.62553 6.75210 6.76689 6.82156 6.88487 7.18089 7.19684 7.30270 7.50767 7.58042 7.72840 7.93973 7.95591 8.09286 8.19562 8.22069 8.37713 8.91415 9.13450 9.57471 10.98525 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011870 B = 0.003611 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.335369 B = 7752.972795 C = 8355.381276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.389 6.389 3 C 0.059 3.941 4 C 0.164 3.836 5 H 0.136 0.864 6 N -0.723 5.723 7 C 0.532 3.468 8 O -0.524 6.524 9 C -0.135 4.135 10 C 0.087 3.913 11 H 0.038 0.962 12 C -0.469 4.469 13 H 0.059 0.941 14 C 0.059 3.941 15 N -0.890 5.890 16 Si 0.892 3.108 17 H -0.283 1.283 18 H -0.289 1.289 19 H -0.275 1.275 20 C -0.026 4.026 21 C -0.132 4.132 22 C -0.142 4.142 23 C -0.154 4.154 24 C -0.143 4.143 25 C -0.068 4.068 26 C 0.456 3.544 27 O -0.490 6.490 28 O -0.364 6.364 29 C 0.038 3.962 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.406 0.594 36 H 0.056 0.944 37 H 0.133 0.867 38 H 0.260 0.740 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.101 0.899 43 H 0.140 0.860 44 H 0.097 0.903 45 H 0.061 0.939 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.592 -4.019 -9.182 14.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.308 6.308 3 C -0.019 4.019 4 C 0.056 3.944 5 H 0.153 0.847 6 N -0.378 5.378 7 C 0.322 3.678 8 O -0.398 6.398 9 C -0.175 4.175 10 C 0.068 3.932 11 H 0.056 0.944 12 C -0.506 4.506 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.529 5.529 16 Si 0.721 3.279 17 H -0.209 1.209 18 H -0.215 1.215 19 H -0.200 1.200 20 C -0.027 4.027 21 C -0.150 4.150 22 C -0.160 4.160 23 C -0.172 4.172 24 C -0.162 4.162 25 C -0.086 4.086 26 C 0.296 3.704 27 O -0.374 6.374 28 O -0.281 6.281 29 C -0.056 4.056 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.241 0.759 36 H 0.075 0.925 37 H 0.151 0.849 38 H 0.070 0.930 39 H 0.123 0.877 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.119 0.881 43 H 0.157 0.843 44 H 0.116 0.884 45 H 0.080 0.920 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.816 -3.940 -9.441 14.177 hybrid contribution -0.422 0.938 0.409 1.107 sum -10.238 -3.001 -9.032 13.979 Atomic orbital electron populations 1.22751 0.80441 1.02950 1.00172 1.87928 1.20249 1.27128 1.95505 1.22794 0.90457 0.85894 1.02720 1.20393 0.93633 0.97732 0.82665 0.84658 1.45987 1.17090 1.52998 1.21769 1.21277 0.79548 0.80041 0.86945 1.90611 1.53014 1.36897 1.59269 1.21910 1.03653 0.97365 0.94567 1.17642 0.90325 0.94743 0.90485 0.94411 1.20997 1.21263 0.90855 1.17513 0.92268 1.24892 0.95958 0.97842 0.95342 1.69688 1.28085 1.33778 1.21390 0.86574 0.78443 0.86108 0.76818 1.20927 1.21462 1.20039 1.20316 0.92390 0.91672 0.98286 1.20898 0.95903 1.00347 0.97840 1.20795 0.98079 1.01664 0.95453 1.20762 0.94026 1.03535 0.98925 1.21041 0.94992 1.01397 0.98723 1.21355 1.01582 0.93389 0.92312 1.24323 0.76550 0.85576 0.83989 1.90651 1.36553 1.24920 1.85319 1.86466 1.73333 1.52206 1.16071 1.23182 1.00482 0.94220 0.87763 0.93665 0.93950 0.89526 0.90643 0.90675 0.75890 0.92531 0.84924 0.92962 0.87677 0.88115 0.88323 0.88090 0.84265 0.88448 0.92030 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.61 9.91 -35.23 -0.35 -4.96 16 3 C 0.06 0.65 5.61 37.16 0.21 0.86 16 4 C 0.16 2.48 2.89 -69.08 -0.20 2.28 16 5 H 0.14 2.07 7.58 -51.93 -0.39 1.68 16 6 N -0.72 -12.49 4.59 -54.93 -0.25 -12.75 16 7 C 0.53 11.52 7.41 -10.99 -0.08 11.44 16 8 O -0.52 -13.05 14.65 5.56 0.08 -12.97 16 9 C -0.13 -2.96 4.07 -27.89 -0.11 -3.08 16 10 C 0.09 2.14 1.97 -92.92 -0.18 1.96 16 11 H 0.04 0.96 7.91 -51.93 -0.41 0.55 16 12 C -0.47 -12.57 7.27 -34.44 -0.25 -12.82 16 13 H 0.06 1.68 7.82 -52.48 -0.41 1.27 16 14 C 0.06 1.54 5.12 -17.82 -0.09 1.45 16 15 N -0.89 -22.43 7.99 55.43 0.44 -21.99 16 16 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 20 C -0.03 -0.61 4.69 -104.62 -0.49 -1.10 16 21 C -0.13 -2.89 9.71 -39.59 -0.38 -3.27 16 22 C -0.14 -2.79 10.05 -39.58 -0.40 -3.19 16 23 C -0.15 -2.96 10.05 -39.58 -0.40 -3.36 16 24 C -0.14 -2.89 10.05 -39.59 -0.40 -3.29 16 25 C -0.07 -1.51 7.45 -39.58 -0.30 -1.81 16 26 C 0.46 7.56 6.81 36.01 0.25 7.81 16 27 O -0.49 -9.71 16.07 -18.75 -0.30 -10.01 16 28 O -0.36 -5.07 10.49 -39.26 -0.41 -5.48 16 29 C 0.04 0.41 10.56 101.05 1.07 1.48 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.41 6.23 8.38 -40.82 -0.34 5.88 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.13 3.01 4.71 -51.93 -0.24 2.77 16 38 H 0.26 6.41 8.31 -40.82 -0.34 6.07 16 39 H 0.11 2.20 8.06 -52.48 -0.42 1.77 16 40 H 0.10 1.70 8.06 -52.49 -0.42 1.28 16 41 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 42 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 43 H 0.14 3.14 5.18 -52.49 -0.27 2.87 16 44 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 46 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 LS Contribution 384.64 15.07 5.80 5.80 Total: -1.00 -32.33 384.64 -7.37 -39.70 By element: Atomic # 1 Polarization: 16.45 SS G_CDS: -6.70 Total: 9.75 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: -0.65 Total: -3.26 kcal Atomic # 7 Polarization: -34.92 SS G_CDS: 0.19 Total: -34.73 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.98 Total: -33.43 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.33 -7.37 -39.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356673874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.854 kcal (2) G-P(sol) polarization free energy of solvation -32.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds