Wall clock time and date at job start Tue Mar 31 2020 19:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42900 * 113.99803 * 2 1 4 4 C 1.52995 * 109.47231 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47433 * 174.99657 * 4 3 2 6 6 N 1.46505 * 109.47077 * 294.99518 * 4 3 2 7 7 C 1.34770 * 120.00096 * 205.00267 * 6 4 3 8 8 O 1.21282 * 120.00471 * 359.97438 * 7 6 4 9 9 C 1.50700 * 120.00252 * 179.97438 * 7 6 4 10 10 C 1.52994 * 109.47505 * 179.97438 * 9 7 6 11 11 H 1.08997 * 109.47674 * 305.00018 * 10 9 7 12 12 C 1.50703 * 109.47113 * 64.99927 * 10 9 7 13 13 H 1.08004 * 120.00335 * 234.68120 * 12 10 9 14 14 C 1.37878 * 120.00054 * 54.67764 * 12 10 9 15 15 N 1.31520 * 119.99983 * 4.87392 * 14 12 10 16 16 Si 1.86799 * 120.00119 * 184.87211 * 14 12 10 17 17 H 1.48503 * 109.46824 * 90.00377 * 16 14 12 18 18 H 1.48506 * 109.46963 * 209.99682 * 16 14 12 19 19 H 1.48492 * 109.47102 * 330.00222 * 16 14 12 20 20 C 1.50702 * 109.47489 * 184.99687 * 10 9 7 21 21 C 1.38228 * 120.00094 * 151.48717 * 20 10 9 22 22 C 1.38237 * 119.99925 * 179.79258 * 21 20 10 23 23 C 1.38241 * 119.99832 * 0.43945 * 22 21 20 24 24 C 1.38232 * 119.99978 * 359.81479 * 23 22 21 25 25 C 1.38232 * 120.00028 * 359.97243 * 24 23 22 26 26 C 1.50699 * 109.47489 * 54.99419 * 4 3 2 27 27 O 1.20831 * 120.00346 * 240.00444 * 26 4 3 28 28 O 1.34231 * 120.00031 * 60.00002 * 26 4 3 29 29 C 1.45198 * 117.00178 * 180.02562 * 28 26 4 30 30 H 1.09003 * 109.47462 * 300.00036 * 1 2 3 31 31 H 1.08995 * 109.47484 * 60.00810 * 1 2 3 32 32 H 1.09003 * 109.46940 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47687 * 59.99429 * 3 2 1 34 34 H 1.09006 * 109.46686 * 299.99479 * 3 2 1 35 35 H 0.97003 * 119.99743 * 24.99663 * 6 4 3 36 36 H 1.09003 * 109.47082 * 59.99639 * 9 7 6 37 37 H 1.09003 * 109.46891 * 300.00039 * 9 7 6 38 38 H 0.97002 * 120.00077 * 179.97438 * 15 14 12 39 39 H 1.08004 * 120.00295 * 359.97438 * 21 20 10 40 40 H 1.07997 * 120.00031 * 180.27151 * 22 21 20 41 41 H 1.08002 * 119.99791 * 179.83480 * 23 22 21 42 42 H 1.07998 * 119.99579 * 180.02562 * 24 23 22 43 43 H 1.08001 * 120.00254 * 179.97438 * 25 24 23 44 44 H 1.08993 * 109.47370 * 180.02562 * 29 28 26 45 45 H 1.09004 * 109.47266 * 300.00118 * 29 28 26 46 46 H 1.08997 * 109.47098 * 59.99483 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 1 3.9784 2.1766 -0.0890 6 7 3.9756 0.5646 1.2528 7 6 5.2193 0.7949 1.7180 8 8 5.9744 1.5151 1.0999 9 6 5.6720 0.1575 3.0064 10 6 7.1124 0.5781 3.3050 11 1 7.7465 0.3335 2.4529 12 6 7.1601 2.0632 3.5567 13 1 7.8296 2.6869 2.9829 14 6 6.3490 2.6257 4.5193 15 7 5.6044 1.8565 5.2833 16 14 6.3076 4.4803 4.7385 17 1 5.2532 5.0583 3.8669 18 1 6.0100 4.8047 6.1568 19 1 7.6263 5.0523 4.3659 20 6 7.6068 -0.1543 4.5257 21 6 8.9544 -0.4261 4.6701 22 6 9.4085 -1.0942 5.7919 23 6 8.5137 -1.4984 6.7650 24 6 7.1654 -1.2312 6.6181 25 6 6.7119 -0.5593 5.4984 26 6 3.9723 0.3324 -1.1628 27 8 4.5883 -0.6884 -0.9662 28 8 3.6773 0.7071 -2.4175 29 6 4.1293 -0.1626 -3.4888 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.6885 1.8465 0.8899 34 1 1.6885 1.8463 -0.8901 35 1 3.3718 -0.0117 1.7471 36 1 5.6228 -0.9273 2.9120 37 1 5.0225 0.4812 3.8197 38 1 5.0340 2.2522 5.9608 39 1 9.6530 -0.1140 3.9078 40 1 10.4619 -1.3027 5.9067 41 1 8.8682 -2.0227 7.6402 42 1 6.4665 -1.5467 7.3786 43 1 5.6585 -0.3509 5.3834 44 1 3.8263 0.2556 -4.4486 45 1 5.2157 -0.2454 -3.4556 46 1 3.6857 -1.1507 -3.3662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356673874.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:12 Heat of formation + Delta-G solvation = -152.585058 kcal Electronic energy + Delta-G solvation = -29751.830961 eV Core-core repulsion = 25606.467891 eV Total energy + Delta-G solvation = -4145.363070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.83058 -40.54366 -39.65377 -38.87177 -37.55148 -36.18365 -35.54151 -32.99060 -31.81961 -31.35343 -29.86958 -28.68016 -27.78697 -27.06047 -25.04893 -24.36215 -23.07699 -22.16758 -21.49278 -20.94634 -18.94464 -18.53636 -18.16254 -17.91379 -17.46751 -17.31937 -16.98261 -16.82462 -16.55516 -16.29088 -15.75398 -15.53739 -15.37016 -15.11966 -14.69761 -14.47909 -14.38276 -14.05263 -13.79546 -13.42149 -13.33484 -13.21455 -13.12596 -13.02482 -12.85672 -12.76758 -12.67169 -12.30214 -12.24619 -11.87128 -11.82814 -11.72317 -11.68133 -11.07272 -11.05872 -10.74591 -10.63386 -10.37435 -10.14543 -9.39762 -9.11151 -7.91573 -6.08249 0.89196 1.00606 1.14305 1.39746 1.42149 1.44512 1.50979 2.06288 2.33674 2.48141 2.67701 3.21726 3.38277 3.58788 3.79364 4.10142 4.27342 4.28376 4.29876 4.33758 4.41238 4.44767 4.46493 4.52091 4.58141 4.62955 4.66136 4.69456 4.80082 4.88932 4.91636 5.08430 5.14709 5.26576 5.35285 5.40184 5.53985 5.63446 5.68100 5.90691 5.94819 6.09740 6.10245 6.36715 6.42734 6.58856 6.64365 6.68194 6.85787 7.47763 7.54266 8.98215 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011870 B = 0.003611 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.335369 B = 7752.972795 C = 8355.381276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.416 6.416 3 C 0.068 3.932 4 C 0.156 3.844 5 H 0.132 0.868 6 N -0.709 5.709 7 C 0.529 3.471 8 O -0.565 6.565 9 C -0.126 4.126 10 C 0.089 3.911 11 H 0.008 0.992 12 C -0.492 4.492 13 H 0.028 0.972 14 C 0.036 3.964 15 N -0.885 5.885 16 Si 0.933 3.067 17 H -0.279 1.279 18 H -0.279 1.279 19 H -0.287 1.287 20 C -0.051 4.051 21 C -0.154 4.154 22 C -0.140 4.140 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.081 4.081 26 C 0.457 3.543 27 O -0.532 6.532 28 O -0.359 6.359 29 C 0.030 3.970 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.416 0.584 36 H 0.068 0.932 37 H 0.130 0.870 38 H 0.263 0.737 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.137 0.863 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.139 0.861 45 H 0.050 0.950 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.228 -4.419 -8.281 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.335 6.335 3 C -0.009 4.009 4 C 0.048 3.952 5 H 0.150 0.850 6 N -0.364 5.364 7 C 0.319 3.681 8 O -0.443 6.443 9 C -0.166 4.166 10 C 0.069 3.931 11 H 0.027 0.973 12 C -0.530 4.530 13 H 0.046 0.954 14 C -0.164 4.164 15 N -0.524 5.524 16 Si 0.761 3.239 17 H -0.205 1.205 18 H -0.204 1.204 19 H -0.213 1.213 20 C -0.052 4.052 21 C -0.172 4.172 22 C -0.158 4.158 23 C -0.166 4.166 24 C -0.164 4.164 25 C -0.099 4.099 26 C 0.299 3.701 27 O -0.420 6.420 28 O -0.274 6.274 29 C -0.063 4.063 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.112 0.888 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.253 0.747 36 H 0.086 0.914 37 H 0.147 0.853 38 H 0.073 0.927 39 H 0.119 0.881 40 H 0.150 0.850 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.157 0.843 45 H 0.069 0.931 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.517 -4.355 -8.550 14.991 hybrid contribution 0.084 0.988 0.062 0.994 sum -11.433 -3.367 -8.488 14.632 Atomic orbital electron populations 1.22950 0.78412 1.03927 1.01479 1.87891 1.22434 1.27426 1.95780 1.22780 0.87170 0.86187 1.04750 1.20698 0.96674 0.96783 0.81030 0.85046 1.45729 1.15674 1.52405 1.22581 1.21217 0.80555 0.79572 0.86758 1.90586 1.54517 1.38806 1.60371 1.21745 1.02050 0.97973 0.94802 1.17522 0.91302 0.93977 0.90265 0.97317 1.20902 1.21916 0.91962 1.18192 0.95404 1.25244 0.95746 1.00306 0.95105 1.69766 1.27508 1.34178 1.20907 0.85947 0.77742 0.83128 0.77072 1.20502 1.20433 1.21321 1.20298 0.93424 0.93165 0.98286 1.21073 0.95497 1.01514 0.99122 1.21152 0.99974 1.00272 0.94394 1.21204 0.93404 1.02387 0.99639 1.21375 0.96278 1.00425 0.98343 1.21323 1.01022 0.94457 0.93107 1.24563 0.75521 0.84947 0.85115 1.90632 1.38513 1.26819 1.86017 1.86451 1.72835 1.52524 1.15624 1.23517 0.99974 0.94504 0.88326 0.92540 0.92413 0.88826 0.89084 0.88049 0.74712 0.91386 0.85290 0.92695 0.88133 0.85029 0.84522 0.85406 0.85059 0.84279 0.93137 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.14 9.91 -148.98 -1.48 -10.62 16 3 C 0.07 1.38 5.61 71.98 0.40 1.79 16 4 C 0.16 4.68 2.89 44.24 0.13 4.81 16 5 H 0.13 4.08 7.58 -2.39 -0.02 4.06 16 6 N -0.71 -24.87 4.59 -446.10 -2.05 -26.92 16 7 C 0.53 23.81 7.41 87.66 0.65 24.46 16 8 O -0.57 -29.68 14.65 -3.04 -0.04 -29.72 16 9 C -0.13 -5.73 4.07 29.85 0.12 -5.61 16 10 C 0.09 4.57 1.97 -12.29 -0.02 4.54 16 11 H 0.01 0.47 7.91 -2.39 -0.02 0.45 16 12 C -0.49 -27.61 7.27 25.60 0.19 -27.43 16 13 H 0.03 1.68 7.82 -2.91 -0.02 1.66 16 14 C 0.04 1.88 5.12 84.65 0.43 2.31 16 15 N -0.88 -44.59 7.99 21.45 0.17 -44.42 16 16 Si 0.93 43.77 29.54 68.60 2.03 45.80 16 17 H -0.28 -12.84 7.11 99.48 0.71 -12.14 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 20 C -0.05 -2.45 4.69 -19.87 -0.09 -2.54 16 21 C -0.15 -6.83 9.71 22.27 0.22 -6.61 16 22 C -0.14 -5.24 10.05 22.27 0.22 -5.02 16 23 C -0.15 -5.22 10.05 22.27 0.22 -4.99 16 24 C -0.15 -5.56 10.05 22.27 0.22 -5.34 16 25 C -0.08 -3.56 7.45 22.27 0.17 -3.40 16 26 C 0.46 15.24 6.81 71.24 0.48 15.72 16 27 O -0.53 -21.67 16.07 21.95 0.35 -21.32 16 28 O -0.36 -9.68 10.49 -51.43 -0.54 -10.22 16 29 C 0.03 0.62 10.56 113.37 1.20 1.82 16 30 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 32 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.42 12.75 8.38 -92.71 -0.78 11.98 16 36 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 37 H 0.13 5.98 4.71 -2.39 -0.01 5.97 16 38 H 0.26 12.73 8.31 -92.71 -0.77 11.96 16 39 H 0.10 4.40 8.06 -2.91 -0.02 4.37 16 40 H 0.13 4.05 8.06 -2.91 -0.02 4.02 16 41 H 0.14 3.78 8.06 -2.91 -0.02 3.75 16 42 H 0.13 4.11 8.06 -2.91 -0.02 4.09 16 43 H 0.13 5.92 5.18 -2.91 -0.02 5.91 16 44 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.05 1.17 8.13 -2.38 -0.02 1.15 16 46 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16 Total: -1.00 -72.40 384.64 4.45 -67.95 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: 0.22 Total: 33.30 kcal Atomic # 6 Polarization: -9.63 SS G_CDS: 5.79 Total: -3.84 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -1.88 Total: -71.34 kcal Atomic # 8 Polarization: -70.16 SS G_CDS: -1.71 Total: -71.87 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -72.40 4.45 -67.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356673874.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.636 kcal (2) G-P(sol) polarization free energy of solvation -72.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds