Wall clock time and date at job start Tue Mar 31 2020 18:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46505 * 119.99944 * 2 1 4 4 C 1.38847 * 119.99752 * 179.97438 * 2 1 3 5 5 N 1.30631 * 126.38490 * 179.97438 * 4 2 1 6 6 O 1.21287 * 110.12419 * 179.73195 * 5 4 2 7 7 C 1.33650 * 109.98146 * 0.43415 * 6 5 4 8 8 C 1.50696 * 126.46403 * 179.83732 * 7 6 5 9 9 N 1.46500 * 109.47129 * 269.69034 * 8 7 6 10 10 C 1.34779 * 119.99738 * 180.02562 * 9 8 7 11 11 O 1.21589 * 120.00349 * 359.97438 * 10 9 8 12 12 N 1.34787 * 119.99663 * 179.97438 * 10 9 8 13 13 C 1.40196 * 119.99563 * 179.97438 * 12 10 9 14 14 C 1.40395 * 125.97533 * 359.97438 * 13 12 10 15 15 C 1.35243 * 107.86535 * 179.71691 * 14 13 12 16 16 N 1.34960 * 107.86064 * 0.42509 * 15 14 13 17 17 C 1.46500 * 125.97985 * 179.83521 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71356 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72558 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72681 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72491 * 22 20 18 26 26 N 1.31213 * 125.96849 * 179.97438 * 13 12 10 27 27 N 1.31040 * 107.07602 * 359.57249 * 7 6 5 28 28 H 1.08992 * 109.47539 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47040 * 300.00295 * 1 2 3 30 30 H 1.08998 * 109.47166 * 59.99766 * 1 2 3 31 31 H 1.08996 * 109.47013 * 269.99983 * 3 2 1 32 32 H 1.08999 * 109.47238 * 30.00114 * 3 2 1 33 33 H 1.09002 * 109.46570 * 149.99893 * 3 2 1 34 34 H 1.08994 * 109.47542 * 149.68330 * 8 7 6 35 35 H 1.09001 * 109.47139 * 29.68664 * 8 7 6 36 36 H 0.96998 * 120.00159 * 359.97438 * 9 8 7 37 37 H 0.96998 * 119.99666 * 359.97438 * 12 10 9 38 38 H 1.08003 * 126.06887 * 0.02562 * 14 13 12 39 39 H 1.08007 * 126.06985 * 180.26350 * 15 14 13 40 40 H 1.09004 * 109.47078 * 4.72118 * 17 16 15 41 41 H 1.08993 * 109.47364 * 244.71890 * 17 16 15 42 42 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1592 -1.2025 0.0005 5 7 3.4574 -1.3478 0.0001 6 8 3.7454 -2.5260 0.0061 7 6 2.6338 -3.2679 0.0016 8 6 2.5616 -4.7731 0.0030 9 7 2.5375 -5.2621 -1.3778 10 6 2.4734 -6.5859 -1.6228 11 8 2.4361 -7.3743 -0.6979 12 7 2.4507 -7.0358 -2.8932 13 6 2.3846 -8.4128 -3.1480 14 6 2.3373 -9.4292 -2.1806 15 6 2.2734 -10.6151 -2.8276 16 7 2.2893 -10.3646 -4.1537 17 6 2.2394 -11.3681 -5.2199 18 6 1.0876 -11.0636 -6.1429 19 1 0.4563 -10.2080 -5.9543 20 6 0.8400 -11.8774 -7.2279 21 7 1.6121 -12.9163 -7.4605 22 14 -0.5872 -11.4996 -8.3724 23 1 -0.6342 -12.5134 -9.4565 24 1 -1.8589 -11.5349 -7.6062 25 1 -0.4032 -10.1502 -8.9642 26 7 2.3560 -8.9769 -4.3323 27 7 1.6183 -2.4396 0.0015 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 2.3792 1.5834 -1.0276 32 1 1.6085 2.0284 0.5138 33 1 3.1499 1.1384 0.5139 34 1 1.6557 -5.0930 0.5176 35 1 3.4335 -5.1782 0.5167 36 1 2.5669 -4.6332 -2.1156 37 1 2.4801 -6.4068 -3.6310 38 1 2.3451 -9.2888 -1.1098 39 1 2.2218 -11.5898 -2.3652 40 1 2.1025 -12.3569 -4.7820 41 1 3.1722 -11.3462 -5.7833 42 1 2.3534 -13.1124 -6.8664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361819541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:43 Heat of formation + Delta-G solvation = 153.399270 kcal Electronic energy + Delta-G solvation = -27054.284652 eV Core-core repulsion = 22883.235218 eV Total energy + Delta-G solvation = -4171.049435 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.78622 -40.85344 -39.72805 -38.01831 -36.16466 -34.94973 -34.68410 -33.67862 -32.32247 -30.82913 -29.39207 -28.97568 -27.72427 -26.33607 -26.10156 -23.60650 -23.12619 -22.01318 -21.58261 -20.64892 -20.04980 -18.62855 -18.46346 -17.89150 -17.18093 -16.94409 -16.53285 -15.92460 -15.85754 -15.54428 -15.42125 -14.77891 -14.75534 -14.25964 -13.96788 -13.79394 -13.62102 -13.18617 -13.10736 -13.04384 -12.65334 -12.47926 -12.40457 -12.38720 -12.22172 -11.83958 -11.35724 -11.16939 -10.98905 -10.82086 -10.50716 -10.22674 -10.16093 -9.79447 -9.58631 -8.99313 -8.57854 -8.57612 -8.20387 -7.50256 -6.57621 -4.31680 0.63214 1.91129 1.98182 2.19828 2.51051 2.55290 2.97896 3.37360 3.38035 3.39643 3.46905 3.59100 3.72891 4.10275 4.16329 4.41411 4.48067 4.72559 4.79299 4.84215 4.91554 5.03718 5.10821 5.15979 5.17349 5.26566 5.41151 5.49945 5.68019 5.86060 6.11645 6.29102 6.35552 6.44198 6.56011 6.62289 6.75035 6.85419 7.37415 7.59950 7.79251 7.84365 7.92631 8.34764 8.39261 8.54924 8.62782 9.36453 10.79896 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.018967 B = 0.001834 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.872373 B =15266.212592 C =16279.513356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.589 5.589 3 C 0.105 3.895 4 C 0.424 3.576 5 N -0.429 5.429 6 O 0.073 5.927 7 C 0.185 3.815 8 C 0.240 3.760 9 N -0.743 5.743 10 C 0.722 3.278 11 O -0.561 6.561 12 N -0.639 5.639 13 C 0.276 3.724 14 C -0.283 4.283 15 C 0.051 3.949 16 N -0.318 5.318 17 C 0.249 3.751 18 C -0.608 4.608 19 H 0.063 0.937 20 C 0.023 3.977 21 N -0.905 5.905 22 Si 1.077 2.923 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.285 1.285 26 N -0.303 5.303 27 N -0.488 5.488 28 H 0.087 0.913 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.402 0.598 37 H 0.409 0.591 38 H 0.163 0.837 39 H 0.168 0.832 40 H 0.046 0.954 41 H 0.034 0.966 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.025 24.915 17.049 30.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.317 5.317 3 C -0.038 4.038 4 C 0.064 3.936 5 N -0.156 5.156 6 O 0.027 5.973 7 C -0.037 4.037 8 C 0.114 3.886 9 N -0.402 5.402 10 C 0.421 3.579 11 O -0.436 6.436 12 N -0.289 5.289 13 C 0.022 3.978 14 C -0.314 4.314 15 C -0.099 4.099 16 N -0.100 5.100 17 C 0.131 3.869 18 C -0.646 4.646 19 H 0.082 0.918 20 C -0.182 4.182 21 N -0.540 5.540 22 Si 0.904 3.096 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.212 1.212 26 N -0.134 5.134 27 N -0.229 5.229 28 H 0.106 0.894 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.135 0.865 35 H 0.129 0.871 36 H 0.236 0.764 37 H 0.244 0.756 38 H 0.181 0.819 39 H 0.185 0.815 40 H 0.064 0.936 41 H 0.052 0.948 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.323 24.599 15.205 28.921 hybrid contribution 0.778 1.080 1.465 1.979 sum 1.101 25.679 16.670 30.635 Atomic orbital electron populations 1.21722 0.76617 1.04303 1.01404 1.45139 1.05536 0.99890 1.81108 1.21657 0.97078 0.83125 1.01943 1.22029 0.85984 0.87804 0.97784 1.74857 1.13759 0.95723 1.31241 1.85310 1.34024 1.11261 1.66678 1.28283 0.80742 0.98138 0.96547 1.19396 1.06622 0.78269 0.84297 1.44777 1.81724 1.05961 1.07759 1.15361 0.77973 0.81696 0.82849 1.90901 1.56125 1.53724 1.42855 1.41276 1.76163 1.04675 1.06799 1.18748 1.03113 0.83060 0.92866 1.21517 1.19630 0.89275 1.01012 1.22566 1.02482 1.00077 0.84751 1.48766 1.52181 1.03409 1.05610 1.19757 0.99119 0.83739 0.84271 1.22104 1.14346 1.15536 1.12607 0.91843 1.25917 1.01926 0.93024 0.97341 1.70851 1.17018 1.26850 1.39300 0.83421 0.74430 0.76022 0.75764 1.20544 1.21235 1.21170 1.77353 1.28155 0.89562 1.18364 1.71838 1.29471 0.98333 1.23287 0.89447 0.92110 0.92106 0.92760 0.90509 0.90933 0.86497 0.87143 0.76367 0.75636 0.81922 0.81491 0.93586 0.94777 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.57 10.77 59.85 0.64 1.21 16 2 N -0.59 -4.63 3.39 -193.16 -0.65 -5.28 16 3 C 0.10 0.57 10.63 59.85 0.64 1.20 16 4 C 0.42 4.31 8.35 -321.18 -2.68 1.63 16 5 N -0.43 -4.64 11.55 28.62 0.33 -4.31 16 6 O 0.07 0.71 11.29 18.09 0.20 0.91 16 7 C 0.19 1.57 7.87 -13.00 -0.10 1.46 16 8 C 0.24 1.76 6.30 -5.20 -0.03 1.73 16 9 N -0.74 -6.52 5.55 -66.41 -0.37 -6.89 16 10 C 0.72 9.51 8.53 -86.91 -0.74 8.77 16 11 O -0.56 -9.03 13.47 5.29 0.07 -8.96 16 12 N -0.64 -9.35 5.46 -15.50 -0.08 -9.43 16 13 C 0.28 5.39 8.11 -154.36 -1.25 4.14 16 14 C -0.28 -5.45 9.61 -39.84 -0.38 -5.83 16 15 C 0.05 1.00 11.44 -17.24 -0.20 0.80 16 16 N -0.32 -7.34 3.67 -62.56 -0.23 -7.56 16 17 C 0.25 6.26 5.57 -5.19 -0.03 6.23 16 18 C -0.61 -17.00 9.24 -34.44 -0.32 -17.32 16 19 H 0.06 1.85 7.81 -52.49 -0.41 1.44 16 20 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 21 N -0.90 -26.24 13.65 55.43 0.76 -25.48 16 22 Si 1.08 24.83 29.90 -169.99 -5.08 19.75 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.34 7.11 56.52 0.40 -5.93 16 25 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 26 N -0.30 -6.91 12.42 31.44 0.39 -6.52 16 27 N -0.49 -4.82 10.66 -12.68 -0.14 -4.95 16 28 H 0.09 0.59 7.20 -51.93 -0.37 0.21 16 29 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.23 8.07 -51.93 -0.42 -0.19 16 33 H 0.07 0.45 7.69 -51.93 -0.40 0.05 16 34 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.40 2.80 8.48 -40.82 -0.35 2.45 16 37 H 0.41 4.83 8.84 -40.82 -0.36 4.47 16 38 H 0.16 3.01 5.91 -52.48 -0.31 2.70 16 39 H 0.17 2.66 8.06 -52.48 -0.42 2.24 16 40 H 0.05 1.11 7.94 -51.93 -0.41 0.70 16 41 H 0.03 0.89 8.00 -51.93 -0.42 0.48 16 42 H 0.27 7.57 7.22 -40.82 -0.29 7.27 16 LS Contribution 370.13 15.07 5.58 5.58 Total: -1.00 -35.65 370.13 -8.85 -44.50 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.07 Total: 4.11 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: -4.55 Total: 4.55 kcal Atomic # 7 Polarization: -70.45 SS G_CDS: 0.01 Total: -70.44 kcal Atomic # 8 Polarization: -8.32 SS G_CDS: 0.28 Total: -8.04 kcal Atomic # 14 Polarization: 24.83 SS G_CDS: -5.08 Total: 19.75 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.65 -8.85 -44.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361819541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.897 kcal (2) G-P(sol) polarization free energy of solvation -35.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 162.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds