Wall clock time and date at job start Tue Mar 31 2020 18:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46505 * 119.99944 * 2 1 4 4 C 1.38847 * 119.99752 * 179.97438 * 2 1 3 5 5 N 1.30631 * 126.38490 * 179.97438 * 4 2 1 6 6 O 1.21287 * 110.12419 * 179.73195 * 5 4 2 7 7 C 1.33650 * 109.98146 * 0.43415 * 6 5 4 8 8 C 1.50696 * 126.46403 * 179.83732 * 7 6 5 9 9 N 1.46500 * 109.47129 * 269.69034 * 8 7 6 10 10 C 1.34779 * 119.99738 * 180.02562 * 9 8 7 11 11 O 1.21589 * 120.00349 * 359.97438 * 10 9 8 12 12 N 1.34787 * 119.99663 * 179.97438 * 10 9 8 13 13 C 1.40196 * 119.99563 * 179.97438 * 12 10 9 14 14 C 1.40395 * 125.97533 * 359.97438 * 13 12 10 15 15 C 1.35243 * 107.86535 * 179.71691 * 14 13 12 16 16 N 1.34960 * 107.86064 * 0.42509 * 15 14 13 17 17 C 1.46500 * 125.97985 * 179.83521 * 16 15 14 18 18 C 1.50706 * 109.47299 * 124.71356 * 17 16 15 19 19 H 1.07998 * 119.99503 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00434 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99826 * 359.72891 * 20 18 17 22 22 Si 1.86800 * 120.00406 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47364 * 179.72558 * 22 20 18 24 24 H 1.48508 * 109.46883 * 299.72681 * 22 20 18 25 25 H 1.48497 * 109.46870 * 59.72491 * 22 20 18 26 26 N 1.31213 * 125.96849 * 179.97438 * 13 12 10 27 27 N 1.31040 * 107.07602 * 359.57249 * 7 6 5 28 28 H 1.08992 * 109.47539 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47040 * 300.00295 * 1 2 3 30 30 H 1.08998 * 109.47166 * 59.99766 * 1 2 3 31 31 H 1.08996 * 109.47013 * 269.99983 * 3 2 1 32 32 H 1.08999 * 109.47238 * 30.00114 * 3 2 1 33 33 H 1.09002 * 109.46570 * 149.99893 * 3 2 1 34 34 H 1.08994 * 109.47542 * 149.68330 * 8 7 6 35 35 H 1.09001 * 109.47139 * 29.68664 * 8 7 6 36 36 H 0.96998 * 120.00159 * 359.97438 * 9 8 7 37 37 H 0.96998 * 119.99666 * 359.97438 * 12 10 9 38 38 H 1.08003 * 126.06887 * 0.02562 * 14 13 12 39 39 H 1.08007 * 126.06985 * 180.26350 * 15 14 13 40 40 H 1.09004 * 109.47078 * 4.72118 * 17 16 15 41 41 H 1.08993 * 109.47364 * 244.71890 * 17 16 15 42 42 H 0.97000 * 120.00236 * 0.27947 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1592 -1.2025 0.0005 5 7 3.4574 -1.3478 0.0001 6 8 3.7454 -2.5260 0.0061 7 6 2.6338 -3.2679 0.0016 8 6 2.5616 -4.7731 0.0030 9 7 2.5375 -5.2621 -1.3778 10 6 2.4734 -6.5859 -1.6228 11 8 2.4361 -7.3743 -0.6979 12 7 2.4507 -7.0358 -2.8932 13 6 2.3846 -8.4128 -3.1480 14 6 2.3373 -9.4292 -2.1806 15 6 2.2734 -10.6151 -2.8276 16 7 2.2893 -10.3646 -4.1537 17 6 2.2394 -11.3681 -5.2199 18 6 1.0876 -11.0636 -6.1429 19 1 0.4563 -10.2080 -5.9543 20 6 0.8400 -11.8774 -7.2279 21 7 1.6121 -12.9163 -7.4605 22 14 -0.5872 -11.4996 -8.3724 23 1 -0.6342 -12.5134 -9.4565 24 1 -1.8589 -11.5349 -7.6062 25 1 -0.4032 -10.1502 -8.9642 26 7 2.3560 -8.9769 -4.3323 27 7 1.6183 -2.4396 0.0015 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 2.3792 1.5834 -1.0276 32 1 1.6085 2.0284 0.5138 33 1 3.1499 1.1384 0.5139 34 1 1.6557 -5.0930 0.5176 35 1 3.4335 -5.1782 0.5167 36 1 2.5669 -4.6332 -2.1156 37 1 2.4801 -6.4068 -3.6310 38 1 2.3451 -9.2888 -1.1098 39 1 2.2218 -11.5898 -2.3652 40 1 2.1025 -12.3569 -4.7820 41 1 3.1722 -11.3462 -5.7833 42 1 2.3534 -13.1124 -6.8664 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361819541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:42 Heat of formation + Delta-G solvation = 128.376767 kcal Electronic energy + Delta-G solvation = -27055.369710 eV Core-core repulsion = 22883.235218 eV Total energy + Delta-G solvation = -4172.134492 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 335.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.50391 -42.28084 -40.97017 -38.60393 -37.05321 -36.29475 -35.55590 -35.45874 -33.20613 -32.44127 -30.97367 -29.54080 -28.62031 -27.78539 -26.90950 -25.11700 -24.22862 -23.18659 -22.31060 -22.12583 -21.37150 -19.62826 -19.24085 -19.17651 -18.73097 -18.24954 -17.22667 -17.13192 -16.94329 -16.28304 -16.18799 -15.96222 -15.83712 -15.60263 -15.53608 -15.03925 -14.76580 -14.44725 -14.09714 -13.86493 -13.67549 -13.57083 -13.47339 -13.19521 -13.10577 -13.05091 -13.00995 -12.59747 -12.07660 -11.99868 -11.94509 -11.76719 -11.60068 -11.17458 -10.98392 -10.67402 -10.42663 -9.77736 -9.15549 -9.12718 -8.74333 -6.53247 -0.08883 0.98732 1.04742 1.34445 1.42688 1.52370 1.58789 1.65723 1.69273 1.80334 2.10191 2.36036 2.50304 2.72989 3.03236 3.07280 3.50009 3.88004 3.93905 4.18816 4.21551 4.30406 4.41167 4.43134 4.51908 4.60128 4.66151 4.73847 4.75128 4.79055 4.80665 4.90330 4.92569 4.98067 5.24949 5.56202 5.71763 5.79984 5.86987 5.96271 5.98731 6.30750 6.44830 6.60053 7.06651 7.22473 7.23774 7.31148 8.60856 Molecular weight = 335.15amu Principal moments of inertia in cm(-1) A = 0.018967 B = 0.001834 C = 0.001720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.872373 B =15266.212592 C =16279.513356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.593 5.593 3 C 0.102 3.898 4 C 0.413 3.587 5 N -0.451 5.451 6 O 0.068 5.932 7 C 0.197 3.803 8 C 0.243 3.757 9 N -0.723 5.723 10 C 0.726 3.274 11 O -0.588 6.588 12 N -0.635 5.635 13 C 0.288 3.712 14 C -0.286 4.286 15 C 0.054 3.946 16 N -0.345 5.345 17 C 0.259 3.741 18 C -0.621 4.621 19 H 0.045 0.955 20 C -0.020 4.020 21 N -0.924 5.924 22 Si 1.119 2.881 23 H -0.276 1.276 24 H -0.271 1.271 25 H -0.276 1.276 26 N -0.349 5.349 27 N -0.502 5.502 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.124 0.876 35 H 0.128 0.872 36 H 0.414 0.586 37 H 0.421 0.579 38 H 0.175 0.825 39 H 0.201 0.799 40 H 0.054 0.946 41 H 0.016 0.984 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.126 26.433 17.984 31.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.321 5.321 3 C -0.040 4.040 4 C 0.053 3.947 5 N -0.180 5.180 6 O 0.024 5.976 7 C -0.025 4.025 8 C 0.118 3.882 9 N -0.382 5.382 10 C 0.425 3.575 11 O -0.465 6.465 12 N -0.286 5.286 13 C 0.032 3.968 14 C -0.317 4.317 15 C -0.094 4.094 16 N -0.127 5.127 17 C 0.140 3.860 18 C -0.659 4.659 19 H 0.064 0.936 20 C -0.219 4.219 21 N -0.560 5.560 22 Si 0.940 3.060 23 H -0.201 1.201 24 H -0.196 1.196 25 H -0.201 1.201 26 N -0.180 5.180 27 N -0.243 5.243 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.076 0.924 32 H 0.122 0.878 33 H 0.080 0.920 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.250 0.750 37 H 0.259 0.741 38 H 0.192 0.808 39 H 0.218 0.782 40 H 0.072 0.928 41 H 0.034 0.966 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.567 26.189 16.172 30.785 hybrid contribution 1.082 0.752 1.317 1.863 sum 0.516 26.941 17.489 32.124 Atomic orbital electron populations 1.21849 0.75434 1.03910 1.03002 1.45561 1.06446 0.99783 1.80294 1.21797 0.97010 0.82778 1.02415 1.22386 0.86082 0.88664 0.97559 1.74841 1.14287 0.96176 1.32665 1.85279 1.34268 1.11152 1.66943 1.28376 0.80307 0.98233 0.95543 1.19568 1.07867 0.77484 0.83310 1.44578 1.80106 1.04516 1.08998 1.15381 0.77601 0.82660 0.81863 1.90877 1.57332 1.54859 1.43394 1.41296 1.76159 1.03094 1.08058 1.19048 1.00665 0.85067 0.92055 1.21736 1.19462 0.89114 1.01402 1.23195 1.00768 1.01903 0.83495 1.48529 1.54649 1.03368 1.06142 1.19405 0.97210 0.84763 0.84624 1.22296 1.15008 1.14954 1.13598 0.93616 1.27256 1.03588 0.92407 0.98685 1.70946 1.17581 1.27809 1.39658 0.82884 0.72351 0.76317 0.74416 1.20093 1.19617 1.20120 1.77265 1.30687 0.89765 1.20263 1.71851 1.29937 0.98570 1.23986 0.90807 0.90258 0.90713 0.92415 0.87818 0.92047 0.85787 0.85393 0.75020 0.74147 0.80829 0.78222 0.92805 0.96619 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.94 10.77 127.77 1.38 2.31 16 2 N -0.59 -8.52 3.39 -767.84 -2.60 -11.12 16 3 C 0.10 0.95 10.63 127.77 1.36 2.31 16 4 C 0.41 8.02 8.35 260.92 2.18 10.20 16 5 N -0.45 -9.46 11.55 -66.71 -0.77 -10.23 16 6 O 0.07 1.25 11.29 74.79 0.84 2.10 16 7 C 0.20 3.06 7.87 88.36 0.70 3.76 16 8 C 0.24 3.06 6.30 85.63 0.54 3.60 16 9 N -0.72 -11.19 5.55 -482.29 -2.68 -13.87 16 10 C 0.73 17.77 8.53 179.05 1.53 19.30 16 11 O -0.59 -17.82 13.47 -4.00 -0.05 -17.87 16 12 N -0.63 -17.72 5.46 -321.22 -1.75 -19.47 16 13 C 0.29 11.01 8.11 133.31 1.08 12.10 16 14 C -0.29 -10.67 9.61 22.10 0.21 -10.46 16 15 C 0.05 2.08 11.44 83.52 0.96 3.03 16 16 N -0.34 -15.99 3.67 -351.84 -1.29 -17.28 16 17 C 0.26 13.26 5.57 85.64 0.48 13.74 16 18 C -0.62 -35.16 9.24 25.60 0.24 -34.93 16 19 H 0.05 2.71 7.81 -2.91 -0.02 2.68 16 20 C -0.02 -1.10 5.46 84.65 0.46 -0.64 16 21 N -0.92 -53.90 13.65 21.45 0.29 -53.61 16 22 Si 1.12 49.57 29.90 68.60 2.05 51.62 16 23 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 24 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 25 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 26 N -0.35 -15.98 12.42 -54.44 -0.68 -16.65 16 27 N -0.50 -9.32 10.66 -311.47 -3.32 -12.64 16 28 H 0.07 0.91 7.20 -2.39 -0.02 0.89 16 29 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 0.38 8.07 -2.39 -0.02 0.36 16 33 H 0.06 0.72 7.69 -2.39 -0.02 0.70 16 34 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.41 4.87 8.48 -92.71 -0.79 4.09 16 37 H 0.42 9.42 8.84 -92.71 -0.82 8.60 16 38 H 0.17 6.13 5.91 -2.91 -0.02 6.11 16 39 H 0.20 5.99 8.06 -2.91 -0.02 5.97 16 40 H 0.05 2.63 7.94 -2.39 -0.02 2.62 16 41 H 0.02 0.86 8.00 -2.39 -0.02 0.84 16 42 H 0.26 15.04 7.22 -92.71 -0.67 14.37 16 Total: -1.00 -76.84 370.13 0.74 -76.11 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -0.41 Total: 18.60 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 11.10 Total: 24.32 kcal Atomic # 7 Polarization: -142.07 SS G_CDS: -12.80 Total: -154.87 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: 0.79 Total: -15.77 kcal Atomic # 14 Polarization: 49.57 SS G_CDS: 2.05 Total: 51.62 kcal Total: -76.84 0.74 -76.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361819541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.484 kcal (2) G-P(sol) polarization free energy of solvation -76.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds