Wall clock time and date at job start Tue Mar 31 2020 18:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35994 * 117.00531 * 2 1 4 4 C 1.38717 * 120.03078 * 359.97438 * 3 2 1 5 5 C 1.38391 * 119.87048 * 179.97438 * 4 3 2 6 6 C 1.37322 * 120.36756 * 0.02562 * 5 4 3 7 7 C 1.38815 * 120.30775 * 359.77734 * 6 5 4 8 8 O 1.36000 * 120.15315 * 179.97438 * 7 6 5 9 9 C 1.42900 * 116.99783 * 90.00012 * 8 7 6 10 10 C 1.38958 * 120.03620 * 179.97438 * 3 2 1 11 11 O 1.36087 * 120.08385 * 0.02562 * 10 3 2 12 12 C 1.42908 * 117.00107 * 90.00088 * 11 10 3 13 13 C 1.51252 * 120.28771 * 180.02562 * 6 5 4 14 14 C 1.53196 * 108.69074 * 289.19599 * 13 6 5 15 15 N 1.45963 * 109.74463 * 80.81957 * 14 13 6 16 16 C 1.34777 * 118.42313 * 115.00531 * 15 14 13 17 17 O 1.21690 * 119.99990 * 354.48626 * 16 15 14 18 18 C 1.46377 * 120.00020 * 174.47793 * 16 15 14 19 19 H 1.07998 * 119.99793 * 334.97333 * 18 16 15 20 20 C 1.40047 * 119.99795 * 154.97736 * 18 16 15 21 21 N 1.30668 * 119.99768 * 184.52999 * 20 18 16 22 22 Si 1.86803 * 120.00093 * 4.53176 * 20 18 16 23 23 H 1.48497 * 109.47248 * 84.58107 * 22 20 18 24 24 H 1.48506 * 109.46685 * 204.58004 * 22 20 18 25 25 H 1.48496 * 109.46723 * 324.57692 * 22 20 18 26 26 C 1.45959 * 123.15475 * 294.99313 * 15 14 13 27 27 C 1.51266 * 119.37809 * 180.02562 * 5 4 3 28 28 H 1.08997 * 109.46680 * 299.99991 * 1 2 3 29 29 H 1.09001 * 109.47091 * 59.99869 * 1 2 3 30 30 H 1.08992 * 109.47345 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.06165 * 359.94402 * 4 3 2 32 32 H 1.08998 * 109.47027 * 60.00339 * 9 8 7 33 33 H 1.09004 * 109.46975 * 179.97438 * 9 8 7 34 34 H 1.08991 * 109.47382 * 299.99735 * 9 8 7 35 35 H 1.09001 * 109.46654 * 299.99881 * 12 11 10 36 36 H 1.08997 * 109.47249 * 59.99730 * 12 11 10 37 37 H 1.09000 * 109.46978 * 180.02562 * 12 11 10 38 38 H 1.08998 * 109.60754 * 48.94329 * 13 6 5 39 39 H 1.08998 * 109.60152 * 169.43409 * 13 6 5 40 40 H 1.09002 * 109.41958 * 320.74336 * 14 13 6 41 41 H 1.08997 * 109.39068 * 200.88216 * 14 13 6 42 42 H 0.97004 * 120.00099 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.42324 * 304.94400 * 26 15 14 44 44 H 1.09003 * 109.42740 * 185.12023 * 26 15 14 45 45 H 1.09005 * 109.60400 * 10.46992 * 27 5 4 46 46 H 1.09000 * 109.60719 * 130.79366 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2917 2.3755 -0.0005 5 6 1.9235 3.6068 0.0000 6 6 3.2946 3.6835 0.0005 7 6 4.0610 2.5260 0.0052 8 8 5.4187 2.6057 0.0052 9 6 6.0660 2.6486 1.2784 10 6 3.4341 1.2851 0.0005 11 8 4.1776 0.1453 0.0005 12 6 4.5325 -0.3978 -1.2728 13 6 3.9833 5.0301 0.0017 14 6 3.7825 5.6854 -1.3684 15 7 2.4623 6.3049 -1.4300 16 6 2.3876 7.6455 -1.5475 17 8 3.4006 8.3179 -1.4988 18 6 1.0879 8.2925 -1.7338 19 1 0.2685 7.7420 -2.1718 20 6 0.9070 9.6255 -1.3441 21 7 -0.2750 10.1760 -1.4280 22 14 2.3557 10.6164 -0.7045 23 1 3.1055 11.1925 -1.8495 24 1 1.8596 11.7135 0.1648 25 1 3.2533 9.7308 0.0798 26 6 1.2192 5.5424 -1.3707 27 6 1.0896 4.8688 0.0000 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 0.2131 2.3208 -0.0019 32 1 5.8256 1.7451 1.8389 33 1 7.1448 2.7108 1.1356 34 1 5.7214 3.5220 1.8320 35 1 3.6273 -0.6386 -1.8301 36 1 5.1181 0.3338 -1.8294 37 1 5.1224 -1.3032 -1.1299 38 1 3.5492 5.6623 0.7762 39 1 5.0484 4.8959 0.1903 40 1 3.8641 4.9279 -2.1479 41 1 4.5476 6.4465 -1.5211 42 1 -0.4002 11.0994 -1.1585 43 1 1.2238 4.7804 -2.1501 44 1 0.3744 6.2135 -1.5261 45 1 0.0455 4.6172 0.1861 46 1 1.4474 5.5436 0.7776 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000373468223.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:26:54 Heat of formation + Delta-G solvation = -118.016625 kcal Electronic energy + Delta-G solvation = -30410.578781 eV Core-core repulsion = 26266.714711 eV Total energy + Delta-G solvation = -4143.864070 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.02296 -39.10252 -38.72125 -37.67370 -36.98119 -34.66693 -32.95472 -32.38233 -31.40572 -29.27126 -28.29914 -27.42676 -27.10288 -26.27758 -25.63505 -23.84026 -22.42109 -21.72312 -20.46324 -19.21521 -18.29168 -17.53515 -17.06945 -16.64927 -16.39764 -16.20996 -15.92814 -15.50433 -15.12077 -14.97366 -14.79381 -14.63841 -14.55005 -14.09532 -13.69558 -13.61128 -13.15866 -12.81724 -12.53789 -12.47156 -12.10721 -12.07669 -12.05635 -11.89201 -11.75230 -11.51558 -11.35145 -11.04415 -10.95079 -10.87560 -10.63947 -10.51641 -10.45371 -10.22024 -9.64125 -9.45046 -9.01012 -8.55206 -8.12515 -7.92352 -7.47306 -6.61388 -4.82070 0.96445 1.25843 2.94100 3.25868 3.43969 3.47292 3.69919 3.74209 4.00876 4.17563 4.21052 4.52663 4.66594 4.88585 4.93154 4.97027 5.00395 5.16103 5.21323 5.24641 5.28388 5.28647 5.30067 5.34799 5.36018 5.52984 5.59004 5.62918 5.67420 5.75053 5.79868 5.80911 5.84546 6.10452 6.18516 6.31626 6.35752 6.41857 6.55515 6.59511 6.71273 6.98341 7.09798 7.26389 7.66407 7.71673 7.87664 8.28573 8.69531 9.10465 9.99057 10.39962 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.017205 B = 0.003585 C = 0.003121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1626.998938 B = 7807.854744 C = 8968.481608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.308 6.308 3 C 0.116 3.884 4 C -0.199 4.199 5 C -0.023 4.023 6 C -0.114 4.114 7 C 0.118 3.882 8 O -0.326 6.326 9 C 0.038 3.962 10 C 0.035 3.965 11 O -0.321 6.321 12 C 0.039 3.961 13 C -0.089 4.089 14 C 0.128 3.872 15 N -0.629 5.629 16 C 0.551 3.449 17 O -0.610 6.610 18 C -0.536 4.536 19 H 0.092 0.908 20 C 0.101 3.899 21 N -0.835 5.835 22 Si 0.952 3.048 23 H -0.278 1.278 24 H -0.321 1.321 25 H -0.252 1.252 26 C 0.127 3.873 27 C -0.099 4.099 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.099 0.901 31 H 0.136 0.864 32 H 0.049 0.951 33 H 0.093 0.907 34 H 0.048 0.952 35 H 0.043 0.957 36 H 0.047 0.953 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.281 0.719 43 H 0.047 0.953 44 H 0.112 0.888 45 H 0.078 0.922 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.196 -20.249 4.580 21.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.222 6.222 3 C 0.070 3.930 4 C -0.218 4.218 5 C -0.024 4.024 6 C -0.114 4.114 7 C 0.073 3.927 8 O -0.242 6.242 9 C -0.056 4.056 10 C -0.010 4.010 11 O -0.238 6.238 12 C -0.056 4.056 13 C -0.128 4.128 14 C 0.004 3.996 15 N -0.363 5.363 16 C 0.359 3.641 17 O -0.501 6.501 18 C -0.572 4.572 19 H 0.110 0.890 20 C -0.115 4.115 21 N -0.465 5.465 22 Si 0.783 3.217 23 H -0.204 1.204 24 H -0.252 1.252 25 H -0.176 1.176 26 C 0.003 3.997 27 C -0.138 4.138 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.154 0.846 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.107 0.893 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.068 0.932 41 H 0.112 0.888 42 H 0.091 0.909 43 H 0.066 0.934 44 H 0.130 0.870 45 H 0.097 0.903 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.832 -20.121 4.583 20.989 hybrid contribution -0.008 0.349 0.212 0.409 sum 3.823 -19.772 4.796 20.701 Atomic orbital electron populations 1.23089 0.78453 1.03844 1.01611 1.86124 1.21186 1.26161 1.88692 1.19151 0.91000 0.84874 0.97990 1.21172 1.00108 0.90962 1.09530 1.19583 0.92826 0.94929 0.95012 1.19907 0.93034 0.95184 1.03309 1.18508 0.83451 0.90210 1.00493 1.85979 1.14922 1.93838 1.29495 1.22997 0.97505 1.00885 0.84210 1.18159 0.86674 0.86078 1.10058 1.86043 1.70343 1.38244 1.29134 1.22952 0.99488 0.98369 0.84779 1.21110 0.99979 0.91656 1.00023 1.20997 0.87536 0.96944 0.94105 1.47387 1.04053 1.07240 1.77611 1.18536 0.90339 0.79945 0.75319 1.90300 1.38825 1.61656 1.59296 1.20728 0.96172 0.97125 1.43201 0.89045 1.25690 0.97045 0.97235 0.91573 1.69536 1.23420 1.14477 1.39067 0.85553 0.80361 0.76377 0.79388 1.20447 1.25174 1.17647 1.21361 0.89440 0.95372 0.93566 1.21362 0.98480 0.93264 1.00647 0.92504 0.92477 0.88304 0.84608 0.93253 0.88825 0.93361 0.93852 0.93410 0.89270 0.90260 0.90442 0.93246 0.88831 0.90899 0.93420 0.86991 0.90303 0.89596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.31 -3.84 10.28 -34.34 -0.35 -4.19 16 3 C 0.12 1.59 6.70 -39.14 -0.26 1.33 16 4 C -0.20 -2.56 8.65 -39.35 -0.34 -2.90 16 5 C -0.02 -0.34 5.05 -104.62 -0.53 -0.86 16 6 C -0.11 -1.74 5.06 -104.47 -0.53 -2.27 16 7 C 0.12 1.76 5.71 -39.08 -0.22 1.54 16 8 O -0.33 -4.64 9.15 -34.18 -0.31 -4.95 16 9 C 0.04 0.42 10.74 101.05 1.09 1.50 16 10 C 0.04 0.52 5.75 -39.02 -0.22 0.30 16 11 O -0.32 -4.60 9.99 -45.22 -0.45 -5.05 16 12 C 0.04 0.43 11.13 101.05 1.13 1.56 16 13 C -0.09 -1.45 5.41 -27.51 -0.15 -1.60 16 14 C 0.13 2.39 6.04 -4.23 -0.03 2.37 16 15 N -0.63 -13.16 2.75 -175.92 -0.48 -13.65 16 16 C 0.55 14.14 7.14 -12.99 -0.09 14.04 16 17 O -0.61 -17.14 11.47 5.20 0.06 -17.08 16 18 C -0.54 -14.52 8.93 -35.63 -0.32 -14.84 16 19 H 0.09 2.46 6.37 -52.49 -0.33 2.12 16 20 C 0.10 2.82 5.52 -17.37 -0.10 2.72 16 21 N -0.83 -23.18 13.92 55.55 0.77 -22.40 16 22 Si 0.95 24.61 26.21 -169.99 -4.46 20.15 16 23 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 24 H -0.32 -7.92 7.11 56.52 0.40 -7.52 16 25 H -0.25 -6.81 6.20 56.52 0.35 -6.46 16 26 C 0.13 2.23 5.97 -4.19 -0.03 2.21 16 27 C -0.10 -1.48 5.48 -27.47 -0.15 -1.63 16 28 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 29 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.14 1.40 6.20 -52.49 -0.33 1.08 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.51 7.73 -51.93 -0.40 0.11 16 35 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.08 1.36 7.21 -51.93 -0.37 0.99 16 39 H 0.08 1.16 6.30 -51.93 -0.33 0.83 16 40 H 0.05 0.88 7.94 -51.93 -0.41 0.46 16 41 H 0.09 1.91 6.78 -51.93 -0.35 1.56 16 42 H 0.28 7.23 8.29 -40.82 -0.34 6.89 16 43 H 0.05 0.78 7.94 -51.93 -0.41 0.37 16 44 H 0.11 2.14 5.19 -51.93 -0.27 1.87 16 45 H 0.08 0.98 7.90 -51.93 -0.41 0.57 16 46 H 0.09 1.40 7.22 -51.93 -0.37 1.03 16 LS Contribution 366.52 15.07 5.52 5.52 Total: -1.00 -32.90 366.52 -5.97 -38.88 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -6.51 Total: -1.90 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 0.24 Total: 4.67 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.29 Total: -36.05 kcal Atomic # 8 Polarization: -30.21 SS G_CDS: -1.06 Total: -31.27 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -4.46 Total: 20.15 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.90 -5.97 -38.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000373468223.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.138 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds