Wall clock time and date at job start Tue Mar 31 2020 19:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35820 * 116.99943 * 2 1 4 4 C 1.39075 * 119.87432 * 359.97438 * 3 2 1 5 5 C 1.37597 * 120.27872 * 179.97438 * 4 3 2 6 6 C 1.39893 * 120.03257 * 359.97438 * 5 4 3 7 7 C 1.47310 * 120.11699 * 180.02562 * 6 5 4 8 8 O 1.21624 * 120.00058 * 183.69105 * 7 6 5 9 9 N 1.34780 * 120.00599 * 3.68433 * 7 6 5 10 10 C 1.46492 * 120.00366 * 185.09942 * 9 7 6 11 11 C 1.53006 * 109.47202 * 184.49695 * 10 9 7 12 12 C 1.50700 * 115.55010 * 306.41679 * 11 10 9 13 13 H 1.07994 * 120.00094 * 144.68089 * 12 11 10 14 14 C 1.37881 * 119.99696 * 324.67006 * 12 11 10 15 15 N 1.31513 * 120.00184 * 0.27109 * 14 12 11 16 16 Si 1.86806 * 119.99639 * 180.27324 * 14 12 11 17 17 H 1.48500 * 109.47185 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46804 * 120.00530 * 16 14 12 19 19 H 1.48498 * 109.46766 * 240.00092 * 16 14 12 20 20 C 1.52995 * 117.49622 * 160.73716 * 11 10 9 21 21 C 1.53003 * 117.49383 * 92.07765 * 11 10 9 22 22 C 1.40204 * 119.76117 * 359.97438 * 6 5 4 23 23 O 1.35760 * 120.14000 * 180.02562 * 22 6 5 24 24 C 1.42903 * 117.00183 * 263.66969 * 23 22 6 25 25 C 1.38806 * 119.72595 * 0.27900 * 22 6 5 26 26 O 1.36104 * 120.02517 * 179.70084 * 25 22 6 27 27 C 1.42897 * 116.99770 * 85.82309 * 26 25 22 28 28 H 1.08997 * 109.47454 * 299.99673 * 1 2 3 29 29 H 1.08996 * 109.47569 * 60.00186 * 1 2 3 30 30 H 1.09004 * 109.47211 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.86681 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.98599 * 179.97438 * 5 4 3 33 33 H 0.97006 * 119.99270 * 5.10279 * 9 7 6 34 34 H 1.09000 * 109.47710 * 304.49980 * 10 9 7 35 35 H 1.09005 * 109.47084 * 64.50101 * 10 9 7 36 36 H 0.97001 * 120.00037 * 185.00335 * 15 14 12 37 37 H 1.08993 * 117.50183 * 0.02562 * 20 11 10 38 38 H 1.09007 * 117.49498 * 145.02392 * 20 11 10 39 39 H 1.08994 * 117.49602 * 214.97885 * 21 11 10 40 40 H 1.08994 * 117.50078 * 359.97438 * 21 11 10 41 41 H 1.09001 * 109.47167 * 174.01610 * 24 23 22 42 42 H 1.09003 * 109.46897 * 294.01438 * 24 23 22 43 43 H 1.09000 * 109.47375 * 54.01587 * 24 23 22 44 44 H 1.08997 * 109.47354 * 304.89511 * 27 26 25 45 45 H 1.09001 * 109.47499 * 64.89567 * 27 26 25 46 46 H 1.09000 * 109.47098 * 184.89401 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.2856 2.3749 -0.0005 5 6 1.9016 3.6053 0.0000 6 6 3.2980 3.6891 0.0016 7 6 3.9594 5.0054 0.0027 8 8 5.1717 5.0769 -0.0636 9 7 3.2212 6.1306 0.0772 10 6 3.8685 7.4401 -0.0340 11 6 2.8321 8.5423 0.1942 12 6 1.6021 8.4677 -0.6733 13 1 0.6421 8.7617 -0.2755 14 6 1.7024 8.0242 -1.9750 15 7 2.8707 7.6613 -2.4578 16 14 0.1790 7.9389 -3.0526 17 1 -1.0016 8.3988 -2.2781 18 1 0.3632 8.8113 -4.2401 19 1 -0.0357 6.5381 -3.4962 20 6 3.3502 9.9327 0.5675 21 6 2.6590 9.0645 1.6219 22 6 4.0657 2.5159 0.0032 23 8 5.4213 2.5884 0.0054 24 6 6.0787 2.4824 -1.2591 25 6 3.4339 1.2800 -0.0026 26 8 4.1732 0.1373 -0.0072 27 6 4.6026 -0.3626 1.2607 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2073 2.3135 -0.0014 32 1 1.3068 4.5067 -0.0009 33 1 2.2613 6.0733 0.2046 34 1 4.6560 7.5210 0.7152 35 1 4.3009 7.5483 -1.0288 36 1 2.9547 7.4186 -3.3932 37 1 4.4292 10.0623 0.6500 38 1 2.8011 10.7935 0.1858 39 1 1.6556 9.3545 1.9335 40 1 3.2831 8.6225 2.3986 41 1 7.1461 2.6616 -1.1298 42 1 5.9247 1.4829 -1.6659 43 1 5.6667 3.2217 -1.9459 44 1 5.1493 0.4163 1.7922 45 1 3.7335 -0.6611 1.8469 46 1 5.2526 -1.2246 1.1102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404080396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:18 Heat of formation + Delta-G solvation = -82.594282 kcal Electronic energy + Delta-G solvation = -30117.686970 eV Core-core repulsion = 25975.358928 eV Total energy + Delta-G solvation = -4142.328042 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.81543 -39.11190 -38.41731 -37.36540 -36.58505 -36.05826 -32.99531 -32.20925 -30.33174 -29.94147 -27.74033 -27.12774 -26.22510 -25.95124 -25.24786 -23.04344 -21.96045 -21.25080 -19.77537 -19.31812 -18.63348 -17.53467 -17.19852 -16.69451 -16.21699 -16.13323 -15.70103 -15.38960 -14.93970 -14.86245 -14.72017 -14.65669 -14.28786 -14.09071 -13.70517 -13.15143 -13.09336 -12.84960 -12.75430 -12.38991 -12.27600 -11.86522 -11.78783 -11.54208 -11.44360 -11.22912 -11.15401 -10.92636 -10.74509 -10.53931 -10.32987 -10.27733 -9.71983 -9.58232 -9.09579 -8.91107 -8.85705 -8.63392 -8.31138 -8.23205 -7.76011 -6.05950 -4.24694 0.96137 1.04360 2.92311 3.09847 3.15409 3.26586 3.28384 3.71678 3.94729 4.11541 4.24405 4.36383 4.73313 4.88967 4.91479 4.95806 5.03201 5.25092 5.26378 5.31280 5.34834 5.38252 5.42517 5.49239 5.61971 5.65338 5.74607 5.97634 6.00184 6.04149 6.22851 6.23882 6.31538 6.37686 6.53516 6.62098 6.73400 6.89422 6.96121 7.09620 7.25147 7.39084 7.54700 7.65657 7.78830 7.92754 8.28008 8.58397 8.79721 9.20794 9.38492 10.84613 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.003994 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.434590 B = 7009.156012 C = 8092.863596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.304 6.304 3 C 0.139 3.861 4 C -0.212 4.212 5 C -0.035 4.035 6 C -0.164 4.164 7 C 0.549 3.451 8 O -0.544 6.544 9 N -0.679 5.679 10 C 0.167 3.833 11 C 0.035 3.965 12 C -0.497 4.497 13 H 0.062 0.938 14 C 0.074 3.926 15 N -0.867 5.867 16 Si 0.890 3.110 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.197 4.197 21 C -0.212 4.212 22 C 0.172 3.828 23 O -0.311 6.311 24 C 0.055 3.945 25 C 0.024 3.976 26 O -0.318 6.318 27 C 0.036 3.964 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.100 0.900 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.397 0.603 34 H 0.024 0.976 35 H 0.112 0.888 36 H 0.262 0.738 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.043 0.957 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.043 0.957 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.872 -14.704 4.610 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.092 3.908 4 C -0.231 4.231 5 C -0.054 4.054 6 C -0.168 4.168 7 C 0.335 3.665 8 O -0.424 6.424 9 N -0.326 5.326 10 C 0.044 3.956 11 C 0.035 3.965 12 C -0.534 4.534 13 H 0.080 0.920 14 C -0.130 4.130 15 N -0.503 5.503 16 Si 0.717 3.283 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.236 4.236 21 C -0.249 4.249 22 C 0.125 3.875 23 O -0.227 6.227 24 C -0.039 4.039 25 C -0.021 4.021 26 O -0.234 6.234 27 C -0.058 4.058 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.118 0.882 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.232 0.768 34 H 0.043 0.957 35 H 0.129 0.871 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.087 0.913 41 H 0.110 0.890 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.665 -15.030 4.373 15.741 hybrid contribution -1.765 0.302 -0.561 1.876 sum -3.429 -14.728 3.811 15.595 Atomic orbital electron populations 1.23139 0.78270 1.04033 1.01750 1.86112 1.21365 1.26158 1.88045 1.19360 0.90978 0.84931 0.95534 1.21102 1.00390 0.91383 1.10243 1.21228 0.93139 0.97943 0.93085 1.20496 0.93475 0.94385 1.08489 1.17659 0.87012 0.83399 0.78458 1.90736 1.13270 1.87230 1.51142 1.45605 1.11087 1.05617 1.70304 1.21061 0.92663 0.79432 1.02432 1.19241 0.95976 0.90334 0.90998 1.20568 0.92392 1.44179 0.96260 0.92007 1.24998 0.96018 0.94055 0.97940 1.69878 1.22663 1.43621 1.14171 0.86569 0.83191 0.77847 0.80691 1.19680 1.20830 1.20847 1.22928 0.97680 0.97556 1.05423 1.22957 1.00179 1.07902 0.93878 1.18721 0.84414 0.89406 0.94924 1.85898 1.13378 1.93006 1.30423 1.22845 0.97290 0.99854 0.83895 1.18158 0.86780 0.86207 1.10965 1.86079 1.69725 1.38044 1.29560 1.22990 0.98917 0.99021 0.84884 0.92363 0.92276 0.88153 0.84266 0.83908 0.76814 0.95735 0.87064 0.92698 0.91446 0.90237 0.90658 0.91314 0.88998 0.93839 0.93115 0.93124 0.93868 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.30 -3.85 10.26 -34.05 -0.35 -4.20 16 3 C 0.14 1.99 6.70 -38.99 -0.26 1.73 16 4 C -0.21 -2.81 9.01 -39.50 -0.36 -3.17 16 5 C -0.04 -0.54 9.51 -39.20 -0.37 -0.91 16 6 C -0.16 -3.04 5.89 -104.85 -0.62 -3.66 16 7 C 0.55 11.91 7.75 -12.57 -0.10 11.81 16 8 O -0.54 -13.22 14.65 -16.65 -0.24 -13.47 16 9 N -0.68 -14.66 5.09 -61.42 -0.31 -14.98 16 10 C 0.17 3.93 4.64 -4.04 -0.02 3.91 16 11 C 0.04 0.82 2.06 -155.66 -0.32 0.49 16 12 C -0.50 -12.21 8.27 -34.44 -0.28 -12.50 16 13 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 14 C 0.07 1.83 5.26 -17.82 -0.09 1.74 16 15 N -0.87 -22.46 10.28 55.43 0.57 -21.89 16 16 Si 0.89 19.38 29.54 -169.99 -5.02 14.35 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 C -0.20 -4.27 9.96 -26.69 -0.27 -4.53 16 21 C -0.21 -4.37 9.92 -26.69 -0.26 -4.64 16 22 C 0.17 3.08 5.74 -38.63 -0.22 2.86 16 23 O -0.31 -5.78 8.47 -47.64 -0.40 -6.19 16 24 C 0.05 0.87 10.60 101.05 1.07 1.94 16 25 C 0.02 0.39 5.74 -39.09 -0.22 0.16 16 26 O -0.32 -4.86 9.97 -45.51 -0.45 -5.32 16 27 C 0.04 0.43 11.13 101.05 1.13 1.55 16 28 H 0.06 0.40 7.65 -51.93 -0.40 0.00 16 29 H 0.06 0.44 7.65 -51.93 -0.40 0.04 16 30 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.14 1.40 6.27 -52.49 -0.33 1.07 16 32 H 0.14 2.07 6.44 -52.49 -0.34 1.74 16 33 H 0.40 8.07 5.98 -40.82 -0.24 7.82 16 34 H 0.02 0.58 8.05 -51.93 -0.42 0.16 16 35 H 0.11 2.96 5.96 -51.93 -0.31 2.66 16 36 H 0.26 6.65 8.32 -40.82 -0.34 6.31 16 37 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 38 H 0.08 1.71 8.14 -51.93 -0.42 1.29 16 39 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 40 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.88 8.08 -51.93 -0.42 0.46 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 385.18 15.07 5.80 5.80 Total: -1.00 -30.22 385.18 -7.25 -37.47 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -6.63 Total: 10.41 kcal Atomic # 6 Polarization: -1.80 SS G_CDS: -0.21 Total: -2.01 kcal Atomic # 7 Polarization: -37.12 SS G_CDS: 0.26 Total: -36.86 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -1.45 Total: -29.17 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -30.22 -7.25 -37.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404080396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.122 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds