Wall clock time and date at job start Tue Mar 31 2020 19:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35820 * 116.99943 * 2 1 4 4 C 1.39075 * 119.87432 * 359.97438 * 3 2 1 5 5 C 1.37597 * 120.27872 * 179.97438 * 4 3 2 6 6 C 1.39893 * 120.03257 * 359.97438 * 5 4 3 7 7 C 1.47310 * 120.11699 * 180.02562 * 6 5 4 8 8 O 1.21624 * 120.00058 * 183.69105 * 7 6 5 9 9 N 1.34780 * 120.00599 * 3.68433 * 7 6 5 10 10 C 1.46492 * 120.00366 * 185.09942 * 9 7 6 11 11 C 1.53006 * 109.47202 * 184.49695 * 10 9 7 12 12 C 1.50700 * 115.55010 * 306.41679 * 11 10 9 13 13 H 1.07994 * 120.00094 * 144.68089 * 12 11 10 14 14 C 1.37881 * 119.99696 * 324.67006 * 12 11 10 15 15 N 1.31513 * 120.00184 * 0.27109 * 14 12 11 16 16 Si 1.86806 * 119.99639 * 180.27324 * 14 12 11 17 17 H 1.48500 * 109.47185 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.46804 * 120.00530 * 16 14 12 19 19 H 1.48498 * 109.46766 * 240.00092 * 16 14 12 20 20 C 1.52995 * 117.49622 * 160.73716 * 11 10 9 21 21 C 1.53003 * 117.49383 * 92.07765 * 11 10 9 22 22 C 1.40204 * 119.76117 * 359.97438 * 6 5 4 23 23 O 1.35760 * 120.14000 * 180.02562 * 22 6 5 24 24 C 1.42903 * 117.00183 * 263.66969 * 23 22 6 25 25 C 1.38806 * 119.72595 * 0.27900 * 22 6 5 26 26 O 1.36104 * 120.02517 * 179.70084 * 25 22 6 27 27 C 1.42897 * 116.99770 * 85.82309 * 26 25 22 28 28 H 1.08997 * 109.47454 * 299.99673 * 1 2 3 29 29 H 1.08996 * 109.47569 * 60.00186 * 1 2 3 30 30 H 1.09004 * 109.47211 * 179.97438 * 1 2 3 31 31 H 1.07999 * 119.86681 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.98599 * 179.97438 * 5 4 3 33 33 H 0.97006 * 119.99270 * 5.10279 * 9 7 6 34 34 H 1.09000 * 109.47710 * 304.49980 * 10 9 7 35 35 H 1.09005 * 109.47084 * 64.50101 * 10 9 7 36 36 H 0.97001 * 120.00037 * 185.00335 * 15 14 12 37 37 H 1.08993 * 117.50183 * 0.02562 * 20 11 10 38 38 H 1.09007 * 117.49498 * 145.02392 * 20 11 10 39 39 H 1.08994 * 117.49602 * 214.97885 * 21 11 10 40 40 H 1.08994 * 117.50078 * 359.97438 * 21 11 10 41 41 H 1.09001 * 109.47167 * 174.01610 * 24 23 22 42 42 H 1.09003 * 109.46897 * 294.01438 * 24 23 22 43 43 H 1.09000 * 109.47375 * 54.01587 * 24 23 22 44 44 H 1.08997 * 109.47354 * 304.89511 * 27 26 25 45 45 H 1.09001 * 109.47499 * 64.89567 * 27 26 25 46 46 H 1.09000 * 109.47098 * 184.89401 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0456 1.2102 0.0000 4 6 1.2856 2.3749 -0.0005 5 6 1.9016 3.6053 0.0000 6 6 3.2980 3.6891 0.0016 7 6 3.9594 5.0054 0.0027 8 8 5.1717 5.0769 -0.0636 9 7 3.2212 6.1306 0.0772 10 6 3.8685 7.4401 -0.0340 11 6 2.8321 8.5423 0.1942 12 6 1.6021 8.4677 -0.6733 13 1 0.6421 8.7617 -0.2755 14 6 1.7024 8.0242 -1.9750 15 7 2.8707 7.6613 -2.4578 16 14 0.1790 7.9389 -3.0526 17 1 -1.0016 8.3988 -2.2781 18 1 0.3632 8.8113 -4.2401 19 1 -0.0357 6.5381 -3.4962 20 6 3.3502 9.9327 0.5675 21 6 2.6590 9.0645 1.6219 22 6 4.0657 2.5159 0.0032 23 8 5.4213 2.5884 0.0054 24 6 6.0787 2.4824 -1.2591 25 6 3.4339 1.2800 -0.0026 26 8 4.1732 0.1373 -0.0072 27 6 4.6026 -0.3626 1.2607 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 0.2073 2.3135 -0.0014 32 1 1.3068 4.5067 -0.0009 33 1 2.2613 6.0733 0.2046 34 1 4.6560 7.5210 0.7152 35 1 4.3009 7.5483 -1.0288 36 1 2.9547 7.4186 -3.3932 37 1 4.4292 10.0623 0.6500 38 1 2.8011 10.7935 0.1858 39 1 1.6556 9.3545 1.9335 40 1 3.2831 8.6225 2.3986 41 1 7.1461 2.6616 -1.1298 42 1 5.9247 1.4829 -1.6659 43 1 5.6667 3.2217 -1.9459 44 1 5.1493 0.4163 1.7922 45 1 3.7335 -0.6611 1.8469 46 1 5.2526 -1.2246 1.1102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404080396.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:17 Heat of formation + Delta-G solvation = -99.902321 kcal Electronic energy + Delta-G solvation = -30118.437503 eV Core-core repulsion = 25975.358928 eV Total energy + Delta-G solvation = -4143.078575 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.00980 -40.46866 -39.73225 -38.67977 -38.21623 -37.31773 -34.73322 -34.09085 -31.50458 -31.16197 -28.71761 -28.18073 -27.73814 -27.36044 -26.93810 -24.35136 -23.14882 -22.94255 -21.31011 -21.11148 -19.82983 -18.90047 -18.44271 -18.16194 -17.44096 -17.24099 -17.18228 -16.71518 -16.44430 -16.33179 -16.02809 -15.77674 -15.66362 -15.49516 -15.33594 -14.81587 -14.34901 -14.18618 -13.88407 -13.65551 -13.64515 -13.35934 -13.21503 -12.92357 -12.78110 -12.64525 -12.57021 -12.25234 -12.20268 -12.04011 -11.95435 -11.50890 -11.47091 -11.00684 -10.86414 -10.69042 -10.49901 -10.12154 -9.84049 -9.68194 -9.28517 -7.93983 -6.18559 -0.30686 -0.12722 1.42926 1.49346 1.58038 1.76386 2.02721 2.40945 2.45729 2.52973 2.70106 3.01581 3.10783 3.64617 3.72444 3.86215 3.92493 4.12687 4.16429 4.27954 4.37603 4.39054 4.42154 4.44313 4.45568 4.48324 4.55019 4.71224 4.74988 4.76398 4.77367 4.80811 4.87317 4.96705 4.97732 5.07443 5.15770 5.21993 5.33039 5.53749 5.61804 5.88431 5.97758 5.98577 6.26086 6.39576 6.58090 6.79617 6.99402 7.46679 7.53316 8.94586 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.012379 B = 0.003994 C = 0.003459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2261.434590 B = 7009.156012 C = 8092.863596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.314 6.314 3 C 0.150 3.850 4 C -0.197 4.197 5 C -0.033 4.033 6 C -0.194 4.194 7 C 0.545 3.455 8 O -0.581 6.581 9 N -0.675 5.675 10 C 0.180 3.820 11 C 0.009 3.991 12 C -0.502 4.502 13 H 0.061 0.939 14 C 0.037 3.963 15 N -0.893 5.893 16 Si 0.947 3.053 17 H -0.264 1.264 18 H -0.291 1.291 19 H -0.279 1.279 20 C -0.199 4.199 21 C -0.188 4.188 22 C 0.156 3.844 23 O -0.332 6.332 24 C 0.057 3.943 25 C 0.015 3.985 26 O -0.331 6.331 27 C 0.033 3.967 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.125 0.875 31 H 0.179 0.821 32 H 0.151 0.849 33 H 0.403 0.597 34 H 0.015 0.985 35 H 0.078 0.922 36 H 0.257 0.743 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.106 0.894 42 H 0.060 0.940 43 H 0.026 0.974 44 H 0.040 0.960 45 H 0.053 0.947 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.529 -16.338 5.263 18.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.226 6.226 3 C 0.103 3.897 4 C -0.216 4.216 5 C -0.051 4.051 6 C -0.198 4.198 7 C 0.333 3.667 8 O -0.463 6.463 9 N -0.323 5.323 10 C 0.056 3.944 11 C 0.008 3.992 12 C -0.540 4.540 13 H 0.080 0.920 14 C -0.164 4.164 15 N -0.530 5.530 16 Si 0.773 3.227 17 H -0.188 1.188 18 H -0.217 1.217 19 H -0.205 1.205 20 C -0.238 4.238 21 C -0.225 4.225 22 C 0.109 3.891 23 O -0.248 6.248 24 C -0.036 4.036 25 C -0.030 4.030 26 O -0.248 6.248 27 C -0.060 4.060 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.143 0.857 31 H 0.197 0.803 32 H 0.168 0.832 33 H 0.239 0.761 34 H 0.033 0.967 35 H 0.095 0.905 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.078 0.922 43 H 0.045 0.955 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -4.360 -16.673 5.046 17.957 hybrid contribution -0.977 0.698 -0.727 1.404 sum -5.337 -15.974 4.319 17.387 Atomic orbital electron populations 1.23555 0.75563 1.06251 1.03047 1.86121 1.24071 1.25105 1.87316 1.19401 0.90495 0.86049 0.93803 1.21420 1.02156 0.89838 1.08150 1.21328 0.91795 0.99368 0.92655 1.20302 0.94870 0.92649 1.11978 1.18196 0.86735 0.84537 0.77240 1.90693 1.14913 1.87942 1.52794 1.45497 1.11276 1.05088 1.70414 1.20715 0.92782 0.80820 1.00085 1.19286 0.95916 0.90933 0.93016 1.20732 0.92691 1.43937 0.96600 0.92042 1.25579 0.98034 0.93844 0.98962 1.70060 1.24347 1.44638 1.13925 0.85675 0.80609 0.77607 0.78793 1.18774 1.21728 1.20504 1.22954 0.98232 0.96779 1.05797 1.22946 1.00767 1.05993 0.92767 1.18902 0.84141 0.90136 0.95874 1.85849 1.14233 1.93254 1.31462 1.22900 0.97812 0.99976 0.82947 1.18194 0.87813 0.85789 1.11186 1.86041 1.69888 1.37523 1.31354 1.23178 0.99668 0.99410 0.83791 0.90664 0.91238 0.85718 0.80339 0.83163 0.76109 0.96655 0.90458 0.93319 0.90887 0.90255 0.89508 0.90185 0.87531 0.92168 0.95469 0.94168 0.92828 0.86539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.81 113.37 1.11 1.22 16 2 O -0.31 -6.91 10.26 -77.31 -0.79 -7.71 16 3 C 0.15 3.96 6.70 22.65 0.15 4.11 16 4 C -0.20 -4.65 9.01 22.32 0.20 -4.45 16 5 C -0.03 -0.97 9.51 22.52 0.21 -0.76 16 6 C -0.19 -7.29 5.89 -20.01 -0.12 -7.41 16 7 C 0.55 24.58 7.75 86.63 0.67 25.25 16 8 O -0.58 -29.78 14.65 16.84 0.25 -29.54 16 9 N -0.68 -29.92 5.09 -466.47 -2.38 -32.30 16 10 C 0.18 8.74 4.64 86.38 0.40 9.14 16 11 C 0.01 0.42 2.06 -52.93 -0.11 0.31 16 12 C -0.50 -24.46 8.27 25.60 0.21 -24.25 16 13 H 0.06 2.95 7.81 -2.91 -0.02 2.93 16 14 C 0.04 1.84 5.26 84.66 0.45 2.29 16 15 N -0.89 -47.25 10.28 21.45 0.22 -47.03 16 16 Si 0.95 39.38 29.54 68.60 2.03 41.40 16 17 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 18 H -0.29 -12.43 7.11 99.48 0.71 -11.73 16 19 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 20 C -0.20 -8.51 9.96 30.62 0.30 -8.21 16 21 C -0.19 -7.48 9.92 30.62 0.30 -7.18 16 22 C 0.16 5.68 5.74 22.88 0.13 5.81 16 23 O -0.33 -12.77 8.47 -63.46 -0.54 -13.31 16 24 C 0.06 1.89 10.60 113.37 1.20 3.09 16 25 C 0.02 0.48 5.74 22.59 0.13 0.61 16 26 O -0.33 -9.80 9.97 -70.41 -0.70 -10.51 16 27 C 0.03 0.74 11.13 113.37 1.26 2.01 16 28 H 0.07 0.67 7.65 -2.39 -0.02 0.65 16 29 H 0.07 0.71 7.65 -2.39 -0.02 0.70 16 30 H 0.12 0.89 8.14 -2.38 -0.02 0.88 16 31 H 0.18 2.73 6.27 -2.91 -0.02 2.71 16 32 H 0.15 4.16 6.44 -2.91 -0.02 4.14 16 33 H 0.40 16.50 5.98 -92.70 -0.55 15.94 16 34 H 0.02 0.75 8.05 -2.39 -0.02 0.73 16 35 H 0.08 4.33 5.96 -2.38 -0.01 4.31 16 36 H 0.26 13.38 8.32 -92.71 -0.77 12.61 16 37 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.08 3.36 8.14 -2.38 -0.02 3.34 16 39 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 41 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 42 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 43 H 0.03 0.99 8.08 -2.39 -0.02 0.97 16 44 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 45 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -66.84 385.18 5.05 -61.79 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: 0.45 Total: 35.59 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: 6.51 Total: 1.60 kcal Atomic # 7 Polarization: -77.17 SS G_CDS: -2.15 Total: -79.32 kcal Atomic # 8 Polarization: -59.27 SS G_CDS: -1.79 Total: -61.06 kcal Atomic # 14 Polarization: 39.38 SS G_CDS: 2.03 Total: 41.40 kcal Total: -66.84 5.05 -61.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404080396.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.111 kcal (2) G-P(sol) polarization free energy of solvation -66.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds