Wall clock time and date at job start Tue Mar 31 2020 19:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35787 * 117.00290 * 2 1 4 4 C 1.38619 * 119.87717 * 359.73117 * 3 2 1 5 5 C 1.38450 * 120.09013 * 180.28314 * 4 3 2 6 6 O 1.35731 * 120.06848 * 179.97438 * 5 4 3 7 7 C 1.42897 * 117.00335 * 0.02562 * 6 5 4 8 8 C 1.40235 * 119.85515 * 359.97438 * 5 4 3 9 9 C 1.47287 * 120.12003 * 180.02562 * 8 5 4 10 10 O 1.21624 * 120.00227 * 355.15223 * 9 8 5 11 11 N 1.34774 * 120.00222 * 175.15018 * 9 8 5 12 12 C 1.46498 * 120.00362 * 185.42849 * 11 9 8 13 13 C 1.53002 * 109.47460 * 184.71767 * 12 11 9 14 14 C 1.50703 * 115.54654 * 305.53284 * 13 12 11 15 15 H 1.08004 * 119.99377 * 145.08157 * 14 13 12 16 16 C 1.37871 * 120.00207 * 325.07821 * 14 13 12 17 17 N 1.31522 * 119.99898 * 1.15146 * 16 14 13 18 18 Si 1.86798 * 119.99992 * 181.15651 * 16 14 13 19 19 H 1.48497 * 109.47473 * 90.00133 * 18 16 14 20 20 H 1.48509 * 109.46851 * 209.99839 * 18 16 14 21 21 H 1.48497 * 109.46943 * 329.99467 * 18 16 14 22 22 C 1.53002 * 117.50056 * 159.86213 * 13 12 11 23 23 C 1.52998 * 117.49770 * 91.20303 * 13 12 11 24 24 C 1.39912 * 119.75944 * 0.02562 * 8 5 4 25 25 C 1.37934 * 119.90786 * 359.97438 * 24 8 5 26 26 O 1.36067 * 119.92906 * 180.02562 * 25 24 8 27 27 C 1.42903 * 117.00013 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47079 * 300.00046 * 1 2 3 29 29 H 1.09003 * 109.47119 * 59.99501 * 1 2 3 30 30 H 1.08997 * 109.47772 * 180.02562 * 1 2 3 31 31 H 1.07994 * 119.95438 * 0.26861 * 4 3 2 32 32 H 1.08999 * 109.46955 * 180.02562 * 7 6 5 33 33 H 1.09006 * 109.46674 * 299.99679 * 7 6 5 34 34 H 1.08998 * 109.47393 * 59.99550 * 7 6 5 35 35 H 0.97000 * 119.99756 * 5.43641 * 11 9 8 36 36 H 1.09001 * 109.47479 * 304.71847 * 12 11 9 37 37 H 1.09000 * 109.47228 * 64.71315 * 12 11 9 38 38 H 0.96998 * 119.99625 * 185.00933 * 17 16 14 39 39 H 1.08996 * 117.49619 * 0.02562 * 22 13 12 40 40 H 1.08996 * 117.49765 * 145.02242 * 22 13 12 41 41 H 1.09003 * 117.49478 * 214.97878 * 23 13 12 42 42 H 1.08996 * 117.50310 * 359.97438 * 23 13 12 43 43 H 1.08008 * 120.04712 * 180.02562 * 24 8 5 44 44 H 1.09004 * 109.47318 * 59.99536 * 27 26 25 45 45 H 1.08998 * 109.47384 * 179.97438 * 27 26 25 46 46 H 1.09008 * 109.47118 * 300.00142 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.2881 2.3708 -0.0056 5 6 1.9122 3.6067 -0.0116 6 8 1.1701 4.7432 -0.0176 7 6 -0.2507 4.5904 -0.0169 8 6 3.3125 3.6817 -0.0113 9 6 3.9824 4.9933 -0.0171 10 8 3.3244 6.0119 -0.1110 11 7 5.3246 5.0650 0.0818 12 6 5.9822 6.3691 0.1960 13 6 7.5002 6.1786 0.1747 14 6 8.0491 5.2187 1.1986 15 1 8.9002 4.5994 0.9564 16 6 7.4650 5.1311 2.4444 17 7 6.4147 5.8689 2.7315 18 14 8.1653 3.9648 3.7244 19 1 9.1926 4.6727 4.5298 20 1 7.0742 3.4954 4.6159 21 1 8.7855 2.7990 3.0452 22 6 8.3594 7.3912 -0.1890 23 6 8.2007 6.2390 -1.1842 24 6 4.0709 2.5059 -0.0056 25 6 3.4390 1.2799 0.0003 26 8 4.1761 0.1362 0.0063 27 6 5.5978 0.2807 0.0057 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2098 2.3112 -0.0056 32 1 -0.7218 5.5733 -0.0226 33 1 -0.5569 4.0360 -0.9041 34 1 -0.5571 4.0453 0.8759 35 1 5.8553 4.2530 0.0773 36 1 5.6836 7.0011 -0.6404 37 1 5.6886 6.8434 1.1324 38 1 6.0480 5.8618 3.6294 39 1 7.8432 8.3248 -0.4127 40 1 9.3219 7.4944 0.3120 41 1 9.0590 5.5847 -1.3374 42 1 7.5802 6.4140 -2.0630 43 1 5.1497 2.5583 -0.0050 44 1 5.9073 0.8334 0.8927 45 1 6.0632 -0.7049 0.0114 46 1 5.9074 0.8240 -0.8872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000404085822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:21 Heat of formation + Delta-G solvation = -82.366972 kcal Electronic energy + Delta-G solvation = -30097.725014 eV Core-core repulsion = 25955.406829 eV Total energy + Delta-G solvation = -4142.318185 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.84472 -39.10326 -38.59664 -38.16682 -36.59442 -35.54537 -32.96262 -32.18061 -30.57985 -29.71516 -28.10805 -27.27306 -26.65972 -25.82236 -25.17933 -22.89019 -21.73133 -21.22834 -19.80150 -19.31202 -18.81874 -17.63871 -17.24008 -16.73854 -16.22508 -16.00562 -15.59502 -15.48310 -15.23914 -14.82157 -14.75867 -14.61199 -14.51080 -14.06270 -13.85680 -13.40066 -12.96140 -12.82866 -12.57864 -12.37229 -12.16976 -11.80773 -11.64019 -11.58343 -11.47860 -11.34145 -11.27926 -11.20573 -11.10775 -10.74868 -10.51664 -10.25743 -10.06581 -9.66858 -9.08035 -8.88179 -8.83362 -8.71285 -8.27146 -7.78259 -7.41141 -6.00907 -4.21250 1.03196 1.46318 3.09414 3.19638 3.28886 3.29417 3.29830 3.34877 3.45653 4.11607 4.26763 4.36136 4.64766 4.80825 4.92427 4.94918 4.96618 5.07362 5.14207 5.17252 5.26718 5.28112 5.34802 5.40156 5.45164 5.48579 5.51773 5.65991 5.87967 6.03756 6.14597 6.21848 6.34032 6.48451 6.57038 6.64377 6.77030 6.92316 6.94752 7.13089 7.27561 7.39624 7.58473 7.62666 7.73223 7.98497 8.31481 8.64608 8.83953 9.29436 9.42091 10.88313 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.004313 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.933256 B = 6489.976475 C = 7650.027670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.301 6.301 3 C 0.155 3.845 4 C -0.278 4.278 5 C 0.185 3.815 6 O -0.272 6.272 7 C 0.021 3.979 8 C -0.152 4.152 9 C 0.552 3.448 10 O -0.544 6.544 11 N -0.680 5.680 12 C 0.166 3.834 13 C 0.036 3.964 14 C -0.498 4.498 15 H 0.061 0.939 16 C 0.075 3.925 17 N -0.865 5.865 18 Si 0.889 3.111 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.198 4.198 23 C -0.212 4.212 24 C -0.100 4.100 25 C 0.055 3.945 26 O -0.309 6.309 27 C 0.021 3.979 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.100 0.900 31 H 0.144 0.856 32 H 0.101 0.899 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.395 0.605 36 H 0.023 0.977 37 H 0.113 0.887 38 H 0.263 0.737 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.150 0.850 44 H 0.060 0.940 45 H 0.099 0.901 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.201 -10.597 -5.198 16.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.214 6.214 3 C 0.109 3.891 4 C -0.298 4.298 5 C 0.137 3.863 6 O -0.182 6.182 7 C -0.074 4.074 8 C -0.156 4.156 9 C 0.337 3.663 10 O -0.424 6.424 11 N -0.328 5.328 12 C 0.043 3.957 13 C 0.035 3.965 14 C -0.535 4.535 15 H 0.079 0.921 16 C -0.130 4.130 17 N -0.501 5.501 18 Si 0.716 3.284 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.237 4.237 23 C -0.250 4.250 24 C -0.120 4.120 25 C 0.010 3.990 26 O -0.224 6.224 27 C -0.074 4.074 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.161 0.839 32 H 0.119 0.881 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.229 0.771 36 H 0.042 0.958 37 H 0.131 0.869 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.167 0.833 44 H 0.078 0.922 45 H 0.117 0.883 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.752 -10.036 -5.094 16.272 hybrid contribution 0.508 -0.815 0.813 1.259 sum -11.244 -10.852 -4.281 16.202 Atomic orbital electron populations 1.23088 0.78684 1.03961 1.01300 1.86142 1.20977 1.25947 1.88288 1.18051 0.88894 0.84454 0.97739 1.20983 1.00344 0.90898 1.17574 1.18603 0.90028 0.84868 0.92799 1.86467 1.17647 1.27194 1.86929 1.23111 0.79812 1.03890 1.00606 1.19343 0.90374 0.94553 1.11318 1.17630 0.82750 0.87568 0.78321 1.90743 1.64853 1.35722 1.51037 1.45563 1.05081 1.10956 1.71214 1.21083 0.90312 0.82879 1.01390 1.19242 0.90043 0.95625 0.91550 1.20517 1.14583 1.21485 0.96948 0.92093 1.24996 0.94022 0.95640 0.98316 1.69867 1.21021 1.39181 1.20057 0.86639 0.78792 0.81254 0.81716 1.20502 1.21074 1.19741 1.22928 1.02826 0.92866 1.05043 1.22953 1.03966 1.03639 0.94405 1.21192 1.00608 0.89732 1.00448 1.17864 0.88039 0.86079 1.06985 1.86126 1.18813 1.27563 1.89853 1.23127 0.78387 1.03880 1.01973 0.92653 0.92666 0.88130 0.83884 0.88085 0.93050 0.93013 0.77062 0.95845 0.86924 0.92623 0.91460 0.90260 0.90688 0.91335 0.83294 0.92186 0.88262 0.92416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 101.05 0.99 1.20 16 2 O -0.30 -4.00 10.26 -33.79 -0.35 -4.35 16 3 C 0.16 2.31 6.70 -38.96 -0.26 2.05 16 4 C -0.28 -3.89 8.01 -39.36 -0.32 -4.21 16 5 C 0.19 3.20 6.69 -38.75 -0.26 2.94 16 6 O -0.27 -4.75 8.56 -40.81 -0.35 -5.10 16 7 C 0.02 0.24 9.81 101.05 0.99 1.23 16 8 C -0.15 -2.89 5.89 -104.84 -0.62 -3.51 16 9 C 0.55 12.39 7.74 -12.58 -0.10 12.30 16 10 O -0.54 -13.80 15.14 -16.65 -0.25 -14.05 16 11 N -0.68 -15.14 5.12 -61.43 -0.31 -15.45 16 12 C 0.17 4.00 4.63 -4.04 -0.02 3.98 16 13 C 0.04 0.85 2.06 -155.66 -0.32 0.53 16 14 C -0.50 -12.39 8.31 -34.44 -0.29 -12.68 16 15 H 0.06 1.51 7.81 -52.48 -0.41 1.10 16 16 C 0.07 1.88 5.28 -17.82 -0.09 1.79 16 17 N -0.87 -22.88 10.22 55.43 0.57 -22.31 16 18 Si 0.89 19.72 29.54 -169.99 -5.02 14.70 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 C -0.20 -4.32 9.96 -26.69 -0.27 -4.59 16 23 C -0.21 -4.42 9.92 -26.69 -0.26 -4.68 16 24 C -0.10 -1.68 8.51 -39.07 -0.33 -2.01 16 25 C 0.06 0.88 6.69 -39.21 -0.26 0.62 16 26 O -0.31 -4.67 10.27 -34.67 -0.36 -5.02 16 27 C 0.02 0.26 9.81 101.05 0.99 1.25 16 28 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 29 H 0.05 0.39 7.64 -51.93 -0.40 -0.01 16 30 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.14 1.51 4.49 -52.49 -0.24 1.27 16 32 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 34 H 0.05 0.49 7.66 -51.93 -0.40 0.09 16 35 H 0.39 8.26 5.98 -40.82 -0.24 8.02 16 36 H 0.02 0.56 8.05 -51.93 -0.42 0.15 16 37 H 0.11 3.07 5.90 -51.93 -0.31 2.77 16 38 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 39 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 41 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 42 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.15 2.34 4.62 -52.48 -0.24 2.10 16 44 H 0.06 0.74 7.65 -51.93 -0.40 0.34 16 45 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.06 0.63 7.66 -51.92 -0.40 0.23 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -31.80 378.36 -7.13 -38.93 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -6.34 Total: 10.76 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -0.42 Total: -3.81 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: 0.25 Total: -37.77 kcal Atomic # 8 Polarization: -27.22 SS G_CDS: -1.30 Total: -28.52 kcal Atomic # 14 Polarization: 19.72 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.80 -7.13 -38.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404085822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.433 kcal (2) G-P(sol) polarization free energy of solvation -31.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds