Wall clock time and date at job start Tue Mar 31 2020 19:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35787 * 117.00290 * 2 1 4 4 C 1.38619 * 119.87717 * 359.73117 * 3 2 1 5 5 C 1.38450 * 120.09013 * 180.28314 * 4 3 2 6 6 O 1.35731 * 120.06848 * 179.97438 * 5 4 3 7 7 C 1.42897 * 117.00335 * 0.02562 * 6 5 4 8 8 C 1.40235 * 119.85515 * 359.97438 * 5 4 3 9 9 C 1.47287 * 120.12003 * 180.02562 * 8 5 4 10 10 O 1.21624 * 120.00227 * 355.15223 * 9 8 5 11 11 N 1.34774 * 120.00222 * 175.15018 * 9 8 5 12 12 C 1.46498 * 120.00362 * 185.42849 * 11 9 8 13 13 C 1.53002 * 109.47460 * 184.71767 * 12 11 9 14 14 C 1.50703 * 115.54654 * 305.53284 * 13 12 11 15 15 H 1.08004 * 119.99377 * 145.08157 * 14 13 12 16 16 C 1.37871 * 120.00207 * 325.07821 * 14 13 12 17 17 N 1.31522 * 119.99898 * 1.15146 * 16 14 13 18 18 Si 1.86798 * 119.99992 * 181.15651 * 16 14 13 19 19 H 1.48497 * 109.47473 * 90.00133 * 18 16 14 20 20 H 1.48509 * 109.46851 * 209.99839 * 18 16 14 21 21 H 1.48497 * 109.46943 * 329.99467 * 18 16 14 22 22 C 1.53002 * 117.50056 * 159.86213 * 13 12 11 23 23 C 1.52998 * 117.49770 * 91.20303 * 13 12 11 24 24 C 1.39912 * 119.75944 * 0.02562 * 8 5 4 25 25 C 1.37934 * 119.90786 * 359.97438 * 24 8 5 26 26 O 1.36067 * 119.92906 * 180.02562 * 25 24 8 27 27 C 1.42903 * 117.00013 * 359.97438 * 26 25 24 28 28 H 1.08997 * 109.47079 * 300.00046 * 1 2 3 29 29 H 1.09003 * 109.47119 * 59.99501 * 1 2 3 30 30 H 1.08997 * 109.47772 * 180.02562 * 1 2 3 31 31 H 1.07994 * 119.95438 * 0.26861 * 4 3 2 32 32 H 1.08999 * 109.46955 * 180.02562 * 7 6 5 33 33 H 1.09006 * 109.46674 * 299.99679 * 7 6 5 34 34 H 1.08998 * 109.47393 * 59.99550 * 7 6 5 35 35 H 0.97000 * 119.99756 * 5.43641 * 11 9 8 36 36 H 1.09001 * 109.47479 * 304.71847 * 12 11 9 37 37 H 1.09000 * 109.47228 * 64.71315 * 12 11 9 38 38 H 0.96998 * 119.99625 * 185.00933 * 17 16 14 39 39 H 1.08996 * 117.49619 * 0.02562 * 22 13 12 40 40 H 1.08996 * 117.49765 * 145.02242 * 22 13 12 41 41 H 1.09003 * 117.49478 * 214.97878 * 23 13 12 42 42 H 1.08996 * 117.50310 * 359.97438 * 23 13 12 43 43 H 1.08008 * 120.04712 * 180.02562 * 24 8 5 44 44 H 1.09004 * 109.47318 * 59.99536 * 27 26 25 45 45 H 1.08998 * 109.47384 * 179.97438 * 27 26 25 46 46 H 1.09008 * 109.47118 * 300.00142 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2098 0.0000 4 6 1.2881 2.3708 -0.0056 5 6 1.9122 3.6067 -0.0116 6 8 1.1701 4.7432 -0.0176 7 6 -0.2507 4.5904 -0.0169 8 6 3.3125 3.6817 -0.0113 9 6 3.9824 4.9933 -0.0171 10 8 3.3244 6.0119 -0.1110 11 7 5.3246 5.0650 0.0818 12 6 5.9822 6.3691 0.1960 13 6 7.5002 6.1786 0.1747 14 6 8.0491 5.2187 1.1986 15 1 8.9002 4.5994 0.9564 16 6 7.4650 5.1311 2.4444 17 7 6.4147 5.8689 2.7315 18 14 8.1653 3.9648 3.7244 19 1 9.1926 4.6727 4.5298 20 1 7.0742 3.4954 4.6159 21 1 8.7855 2.7990 3.0452 22 6 8.3594 7.3912 -0.1890 23 6 8.2007 6.2390 -1.1842 24 6 4.0709 2.5059 -0.0056 25 6 3.4390 1.2799 0.0003 26 8 4.1761 0.1362 0.0063 27 6 5.5978 0.2807 0.0057 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 0.2098 2.3112 -0.0056 32 1 -0.7218 5.5733 -0.0226 33 1 -0.5569 4.0360 -0.9041 34 1 -0.5571 4.0453 0.8759 35 1 5.8553 4.2530 0.0773 36 1 5.6836 7.0011 -0.6404 37 1 5.6886 6.8434 1.1324 38 1 6.0480 5.8618 3.6294 39 1 7.8432 8.3248 -0.4127 40 1 9.3219 7.4944 0.3120 41 1 9.0590 5.5847 -1.3374 42 1 7.5802 6.4140 -2.0630 43 1 5.1497 2.5583 -0.0050 44 1 5.9073 0.8334 0.8927 45 1 6.0632 -0.7049 0.0114 46 1 5.9074 0.8240 -0.8872 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000404085822.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:01:20 Heat of formation + Delta-G solvation = -101.922561 kcal Electronic energy + Delta-G solvation = -30098.573008 eV Core-core repulsion = 25955.406829 eV Total energy + Delta-G solvation = -4143.166179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.03059 -40.43221 -39.87955 -39.41451 -38.35668 -36.78377 -34.73478 -34.09837 -31.82160 -30.82736 -29.02357 -28.18134 -28.03383 -27.49997 -26.75905 -24.18853 -22.95873 -22.86492 -21.32990 -21.13047 -20.04972 -18.98419 -18.38713 -18.25262 -17.47191 -17.25842 -16.95514 -16.71566 -16.51805 -16.20688 -16.17937 -15.84854 -15.73767 -15.61377 -15.35060 -14.86500 -14.59788 -13.93558 -13.83537 -13.72531 -13.47950 -13.33487 -13.20661 -12.92551 -12.60713 -12.52545 -12.50981 -12.42502 -12.32247 -12.28159 -12.11199 -12.02760 -11.48841 -11.22261 -10.94003 -10.73076 -10.60112 -10.12520 -9.88650 -9.59167 -8.64907 -7.93046 -6.18824 -0.23496 0.25308 1.42648 1.47043 1.54501 1.94252 2.14682 2.24209 2.38911 2.42024 2.53372 2.81110 3.09511 3.55978 3.65206 3.80026 3.84484 4.04786 4.26639 4.27263 4.34800 4.36795 4.37180 4.40055 4.40133 4.42391 4.54651 4.58708 4.70568 4.73614 4.76655 4.78529 4.81742 4.86335 4.97296 5.01075 5.15572 5.28772 5.34239 5.54084 5.61704 5.91068 5.97642 5.99356 6.30557 6.39298 6.52949 6.80013 7.01650 7.46369 7.57052 8.93946 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.004313 C = 0.003659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2473.933256 B = 6489.976475 C = 7650.027670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.313 6.313 3 C 0.166 3.834 4 C -0.265 4.265 5 C 0.181 3.819 6 O -0.309 6.309 7 C 0.009 3.991 8 C -0.191 4.191 9 C 0.548 3.452 10 O -0.584 6.584 11 N -0.678 5.678 12 C 0.178 3.822 13 C 0.008 3.992 14 C -0.502 4.502 15 H 0.062 0.938 16 C 0.037 3.963 17 N -0.892 5.892 18 Si 0.943 3.057 19 H -0.282 1.282 20 H -0.293 1.293 21 H -0.257 1.257 22 C -0.198 4.198 23 C -0.187 4.187 24 C -0.099 4.099 25 C 0.045 3.955 26 O -0.318 6.318 27 C 0.014 3.986 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.125 0.875 31 H 0.181 0.819 32 H 0.111 0.889 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.400 0.600 36 H 0.015 0.985 37 H 0.078 0.922 38 H 0.256 0.744 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.151 0.849 44 H 0.052 0.948 45 H 0.127 0.873 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.075 -13.078 -5.754 18.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.226 6.226 3 C 0.118 3.882 4 C -0.284 4.284 5 C 0.132 3.868 6 O -0.221 6.221 7 C -0.085 4.085 8 C -0.195 4.195 9 C 0.336 3.664 10 O -0.467 6.467 11 N -0.325 5.325 12 C 0.055 3.945 13 C 0.008 3.992 14 C -0.540 4.540 15 H 0.081 0.919 16 C -0.165 4.165 17 N -0.529 5.529 18 Si 0.770 3.230 19 H -0.208 1.208 20 H -0.219 1.219 21 H -0.181 1.181 22 C -0.237 4.237 23 C -0.224 4.224 24 C -0.118 4.118 25 C 0.000 4.000 26 O -0.233 6.233 27 C -0.081 4.081 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.144 0.856 31 H 0.198 0.802 32 H 0.130 0.870 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.235 0.765 36 H 0.033 0.967 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.105 0.895 42 H 0.098 0.902 43 H 0.168 0.832 44 H 0.071 0.929 45 H 0.145 0.855 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.614 -12.551 -5.666 18.675 hybrid contribution 0.658 -0.118 0.950 1.162 sum -11.956 -12.669 -4.716 18.047 Atomic orbital electron populations 1.23524 0.75860 1.06254 1.02742 1.86147 1.23883 1.24969 1.87589 1.18216 0.88790 0.85399 0.95796 1.21205 1.02015 0.89124 1.16080 1.18769 0.89567 0.86023 0.92447 1.86417 1.20688 1.28143 1.86873 1.23489 0.76790 1.05516 1.02734 1.19163 0.91635 0.93211 1.15472 1.18196 0.82508 0.88688 0.77028 1.90693 1.65528 1.37482 1.52977 1.45480 1.05340 1.10447 1.71267 1.20746 0.91134 0.83551 0.99105 1.19280 0.89636 0.96891 0.93427 1.20710 1.14397 1.21528 0.97319 0.91940 1.25583 0.94203 0.96786 0.99916 1.70058 1.22241 1.40765 1.19814 0.85769 0.77729 0.80042 0.79496 1.20783 1.21910 1.18122 1.22952 1.02370 0.93051 1.05307 1.22944 1.03554 1.02492 0.93441 1.21105 1.00600 0.89584 1.00548 1.18016 0.88963 0.85921 1.07128 1.86117 1.20197 1.27181 1.89761 1.23371 0.77061 1.05678 1.01970 0.91324 0.90975 0.85646 0.80166 0.87046 0.90550 0.91015 0.76466 0.96690 0.90414 0.93388 0.90850 0.90199 0.89450 0.90172 0.83185 0.92943 0.85468 0.91697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.81 113.37 1.11 1.24 16 2 O -0.31 -7.40 10.26 -77.09 -0.79 -8.19 16 3 C 0.17 4.58 6.70 22.67 0.15 4.73 16 4 C -0.27 -6.83 8.01 22.41 0.18 -6.65 16 5 C 0.18 6.18 6.69 22.81 0.15 6.34 16 6 O -0.31 -10.83 8.56 -69.60 -0.60 -11.42 16 7 C 0.01 0.18 9.81 113.37 1.11 1.29 16 8 C -0.19 -7.46 5.89 -20.01 -0.12 -7.58 16 9 C 0.55 25.75 7.74 86.62 0.67 26.42 16 10 O -0.58 -31.22 15.14 16.84 0.25 -30.96 16 11 N -0.68 -31.36 5.12 -466.50 -2.39 -33.75 16 12 C 0.18 8.93 4.63 86.38 0.40 9.33 16 13 C 0.01 0.39 2.06 -52.93 -0.11 0.28 16 14 C -0.50 -24.99 8.31 25.60 0.21 -24.78 16 15 H 0.06 3.04 7.81 -2.91 -0.02 3.01 16 16 C 0.04 1.86 5.28 84.65 0.45 2.31 16 17 N -0.89 -48.68 10.22 21.45 0.22 -48.46 16 18 Si 0.94 40.61 29.54 68.60 2.03 42.64 16 19 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 20 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 21 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 22 C -0.20 -8.58 9.96 30.62 0.30 -8.28 16 23 C -0.19 -7.57 9.92 30.62 0.30 -7.27 16 24 C -0.10 -3.34 8.51 22.60 0.19 -3.15 16 25 C 0.04 1.39 6.69 22.51 0.15 1.54 16 26 O -0.32 -9.18 10.27 -80.24 -0.82 -10.00 16 27 C 0.01 0.31 9.81 113.37 1.11 1.42 16 28 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 29 H 0.07 0.69 7.64 -2.39 -0.02 0.67 16 30 H 0.13 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.18 3.08 4.49 -2.91 -0.01 3.07 16 32 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.08 1.15 7.66 -2.38 -0.02 1.13 16 34 H 0.07 1.15 7.66 -2.39 -0.02 1.14 16 35 H 0.40 17.29 5.98 -92.71 -0.55 16.74 16 36 H 0.01 0.75 8.05 -2.39 -0.02 0.73 16 37 H 0.08 4.48 5.90 -2.39 -0.01 4.46 16 38 H 0.26 13.82 8.32 -92.71 -0.77 13.05 16 39 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 40 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 41 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 42 H 0.08 3.05 8.14 -2.39 -0.02 3.03 16 43 H 0.15 4.83 4.62 -2.91 -0.01 4.81 16 44 H 0.05 1.26 7.65 -2.39 -0.02 1.24 16 45 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.06 1.36 7.66 -2.38 -0.02 1.34 16 Total: -1.00 -71.05 378.36 4.64 -66.40 By element: Atomic # 1 Polarization: 36.07 SS G_CDS: 0.47 Total: 36.54 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: 6.28 Total: -2.79 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -2.17 Total: -82.21 kcal Atomic # 8 Polarization: -58.62 SS G_CDS: -1.96 Total: -60.58 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Total: -71.05 4.64 -66.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000404085822.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.521 kcal (2) G-P(sol) polarization free energy of solvation -71.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds