Wall clock time and date at job start Tue Mar 31 2020 18:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46906 * 110.99755 * 2 1 4 4 C 1.50703 * 109.47109 * 66.04401 * 3 2 1 5 5 H 1.08005 * 119.99876 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99989 * 180.02562 * 4 3 2 7 7 N 1.31518 * 119.99944 * 359.97438 * 6 4 3 8 8 Si 1.86798 * 119.99979 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.47454 * 59.99696 * 8 6 4 10 10 H 1.48506 * 109.47297 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46926 * 299.99488 * 8 6 4 12 12 C 1.46893 * 111.00360 * 236.04616 * 2 1 3 13 13 C 1.52998 * 109.47138 * 293.95275 * 12 2 1 14 14 H 1.08999 * 109.47574 * 59.99947 * 13 12 2 15 15 O 1.42904 * 109.47070 * 299.99983 * 13 12 2 16 16 C 1.53004 * 109.47236 * 179.97438 * 13 12 2 17 17 O 1.42901 * 109.46855 * 184.99680 * 16 13 12 18 18 C 1.35672 * 116.99592 * 180.02562 * 17 16 13 19 19 C 1.39280 * 119.71412 * 359.97438 * 18 17 16 20 20 C 1.36581 * 120.26405 * 180.13050 * 19 18 17 21 21 C 1.39789 * 119.78869 * 359.97438 * 20 19 18 22 22 C 1.40612 * 120.31840 * 359.76719 * 21 20 19 23 23 C 1.38563 * 119.15226 * 0.09853 * 22 21 20 24 24 O 1.35334 * 120.82737 * 180.59984 * 22 21 20 25 25 C 1.42738 * 118.70744 * 337.50340 * 24 22 21 26 26 C 1.53562 * 109.34474 * 52.55980 * 25 24 22 27 27 C 1.47076 * 120.68658 * 179.54135 * 21 20 19 28 28 O 1.21331 * 121.73143 * 348.02237 * 27 21 20 29 29 H 1.08995 * 109.47046 * 60.00231 * 1 2 3 30 30 H 1.09008 * 109.46903 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47457 * 299.99830 * 1 2 3 32 32 H 1.08992 * 109.47459 * 186.04319 * 3 2 1 33 33 H 1.09004 * 109.47040 * 306.04470 * 3 2 1 34 34 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.47389 * 53.94866 * 12 2 1 36 36 H 1.08994 * 109.47622 * 173.94883 * 12 2 1 37 37 H 0.96699 * 113.99808 * 300.00031 * 15 13 12 38 38 H 1.08997 * 109.47179 * 305.00042 * 16 13 12 39 39 H 1.09002 * 109.46927 * 64.99980 * 16 13 12 40 40 H 1.07997 * 119.86753 * 0.10629 * 19 18 17 41 41 H 1.08004 * 120.10301 * 180.02562 * 20 19 18 42 42 H 1.08002 * 120.04840 * 180.02562 * 23 22 21 43 43 H 1.08998 * 109.49203 * 172.52596 * 25 24 22 44 44 H 1.09000 * 109.49144 * 292.59610 * 25 24 22 45 45 H 1.09007 * 109.91209 * 60.71519 * 26 25 24 46 46 H 1.09000 * 109.91184 * 181.79467 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0472 1.2984 5 1 1.0745 1.5113 2.0488 6 6 2.0266 3.3496 1.5285 7 7 2.7118 4.0020 0.6149 8 14 1.5827 4.1869 3.1382 9 1 2.1754 3.4298 4.2699 10 1 2.1147 5.5734 3.1382 11 1 0.1055 4.2230 3.2864 12 6 1.9955 -0.7659 -1.1375 13 6 1.6316 -2.2426 -0.9703 14 1 0.5473 -2.3476 -0.9323 15 8 2.2010 -2.7391 0.2427 16 6 2.1794 -3.0403 -2.1554 17 8 1.7413 -4.3971 -2.0596 18 6 2.1431 -5.2447 -3.0398 19 6 2.9458 -4.7719 -4.0752 20 6 3.3545 -5.6147 -5.0692 21 6 2.9651 -6.9570 -5.0453 22 6 2.1592 -7.4439 -4.0009 23 6 1.7557 -6.5761 -2.9989 24 8 1.7862 -8.7442 -3.9612 25 6 1.7864 -9.4949 -5.1752 26 6 3.1555 -9.3588 -5.8573 27 6 3.3855 -7.8796 -6.1109 28 8 3.8902 -7.4793 -7.1390 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.0796 1.3446 -0.1082 33 1 1.5610 1.9274 -0.8310 34 1 2.9863 4.9181 0.7769 35 1 1.5611 -0.3873 -2.0628 36 1 3.0797 -0.6610 -1.1756 37 1 3.1653 -2.6770 0.2788 38 1 1.8145 -2.6054 -3.0859 39 1 3.2689 -3.0085 -2.1422 40 1 3.2459 -3.7346 -4.0923 41 1 3.9773 -5.2454 -5.8706 42 1 1.1370 -6.9347 -2.1896 43 1 1.5931 -10.5445 -4.9538 44 1 1.0100 -9.1139 -5.8386 45 1 3.9361 -9.7491 -5.2042 46 1 3.1555 -9.9029 -6.8017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416407859.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:19:23 Heat of formation + Delta-G solvation = -151.413646 kcal Electronic energy + Delta-G solvation = -27853.720772 eV Core-core repulsion = 23708.408498 eV Total energy + Delta-G solvation = -4145.312274 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.14046 -40.86615 -39.55762 -39.21017 -37.64619 -36.80295 -34.62061 -33.44984 -32.18292 -31.45275 -30.83817 -29.19081 -27.88748 -26.07201 -25.65517 -24.46925 -23.66789 -22.70341 -21.84909 -20.58673 -19.78484 -18.58806 -18.31609 -17.88546 -17.64951 -17.47223 -17.19895 -16.79989 -16.42624 -16.12555 -16.02770 -15.80197 -15.54303 -15.50294 -15.13923 -15.00500 -14.94167 -14.39711 -14.22442 -14.02458 -13.80887 -13.56230 -13.27525 -13.16526 -12.84281 -12.74593 -12.56759 -12.55712 -12.40218 -12.26940 -12.03262 -11.93367 -11.75491 -11.60495 -11.40334 -10.88219 -10.81933 -10.60781 -9.74611 -9.36323 -8.98108 -8.20534 -6.29932 -0.45108 0.21911 1.20759 1.41840 1.44611 1.52436 1.61545 2.28735 2.41647 2.60121 2.90169 3.12073 3.26272 3.45836 3.55790 3.65800 3.72831 3.78435 3.84729 3.90385 4.05051 4.08278 4.13523 4.28467 4.30655 4.31874 4.51610 4.57282 4.60934 4.69894 4.72191 4.76555 4.82510 4.93712 4.98376 5.07072 5.09007 5.17491 5.21752 5.25500 5.31531 5.64919 6.04459 6.13488 6.24204 6.30118 6.34815 6.61818 6.85529 6.91752 7.39655 8.89962 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.034464 B = 0.001741 C = 0.001685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.258461 B =16081.015290 C =16610.459719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.540 5.540 3 C 0.208 3.792 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.933 5.933 8 Si 0.968 3.032 9 H -0.269 1.269 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.026 3.974 13 C 0.126 3.874 14 H 0.100 0.900 15 O -0.557 6.557 16 C 0.029 3.971 17 O -0.307 6.307 18 C 0.197 3.803 19 C -0.252 4.252 20 C 0.008 3.992 21 C -0.311 4.311 22 C 0.223 3.777 23 C -0.214 4.214 24 O -0.314 6.314 25 C 0.065 3.935 26 C -0.196 4.196 27 C 0.401 3.599 28 O -0.491 6.491 29 H 0.013 0.987 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.008 0.992 33 H -0.036 1.036 34 H 0.264 0.736 35 H 0.043 0.957 36 H 0.079 0.921 37 H 0.383 0.617 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.154 0.846 41 H 0.142 0.858 42 H 0.150 0.850 43 H 0.159 0.841 44 H 0.077 0.923 45 H 0.127 0.873 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.793 -28.370 -13.579 31.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.264 5.264 3 C 0.082 3.918 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.196 4.196 7 N -0.574 5.574 8 Si 0.792 3.208 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.194 1.194 12 C -0.102 4.102 13 C 0.066 3.934 14 H 0.118 0.882 15 O -0.363 6.363 16 C -0.046 4.046 17 O -0.219 6.219 18 C 0.149 3.851 19 C -0.271 4.271 20 C -0.010 4.010 21 C -0.313 4.313 22 C 0.176 3.824 23 C -0.233 4.233 24 O -0.227 6.227 25 C -0.009 4.009 26 C -0.233 4.233 27 C 0.282 3.718 28 O -0.369 6.369 29 H 0.031 0.969 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.026 0.974 33 H -0.018 1.018 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.097 0.903 37 H 0.232 0.768 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.171 0.829 41 H 0.160 0.840 42 H 0.168 0.832 43 H 0.177 0.823 44 H 0.096 0.904 45 H 0.145 0.855 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.109 -28.492 -13.235 31.436 hybrid contribution 0.495 1.738 -0.548 1.889 sum -0.614 -26.754 -13.784 30.102 Atomic orbital electron populations 1.22243 0.87799 1.00889 1.00014 1.61879 1.08037 1.15050 1.41436 1.19408 0.93868 0.83627 0.94935 1.21447 1.34895 0.97459 1.02499 0.92135 1.25880 0.95063 0.98054 1.00605 1.70063 1.39304 1.11902 1.36106 0.85462 0.78778 0.77177 0.79355 1.19454 1.20818 1.19365 1.22692 1.01106 0.93679 0.92762 1.21772 0.99176 0.89379 0.83033 0.88187 1.86602 1.26512 1.84790 1.38392 1.23765 1.01207 0.78950 1.00705 1.86087 1.69987 1.20931 1.44874 1.19097 0.89860 0.89573 0.86532 1.21177 1.05960 1.02661 0.97289 1.20818 0.93312 0.90853 0.96036 1.20609 1.11325 0.97399 1.01978 1.18609 0.89079 0.83328 0.91431 1.19734 1.09808 0.90090 1.03676 1.85760 1.82154 1.18590 1.36147 1.23419 0.95551 0.98516 0.83393 1.23086 1.00921 0.93298 1.06034 1.22809 0.72833 0.92495 0.83684 1.90551 1.35923 1.82340 1.28088 0.96850 0.90531 0.92695 0.97378 1.01814 0.92695 0.93867 0.90275 0.76800 0.88932 0.89201 0.82885 0.83989 0.83217 0.82339 0.90429 0.85519 0.85165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.47 9.16 127.69 1.17 2.64 16 2 N -0.54 -22.44 4.62 -927.05 -4.28 -26.72 16 3 C 0.21 10.80 4.72 85.56 0.40 11.20 16 4 C -0.52 -29.61 8.51 25.60 0.22 -29.39 16 5 H 0.06 3.39 7.10 -2.91 -0.02 3.37 16 6 C 0.00 0.12 5.46 84.65 0.46 0.58 16 7 N -0.93 -55.54 13.29 21.45 0.28 -55.25 16 8 Si 0.97 44.21 29.54 68.60 2.03 46.23 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 C 0.03 0.82 4.62 86.30 0.40 1.22 16 13 C 0.13 3.22 3.12 30.60 0.10 3.32 16 14 H 0.10 2.68 6.47 -2.39 -0.02 2.66 16 15 O -0.56 -16.13 13.17 -144.36 -1.90 -18.03 16 16 C 0.03 0.56 4.36 71.98 0.31 0.87 16 17 O -0.31 -6.89 10.08 -85.27 -0.86 -7.75 16 18 C 0.20 4.06 6.69 22.64 0.15 4.21 16 19 C -0.25 -4.59 8.96 22.13 0.20 -4.39 16 20 C 0.01 0.15 9.59 22.26 0.21 0.37 16 21 C -0.31 -5.89 5.84 -20.00 -0.12 -6.01 16 22 C 0.22 4.04 6.55 22.93 0.15 4.19 16 23 C -0.21 -4.24 9.91 22.46 0.22 -4.02 16 24 O -0.31 -4.45 10.22 -86.23 -0.88 -5.33 16 25 C 0.06 0.42 6.98 72.17 0.50 0.92 16 26 C -0.20 -1.58 6.45 30.40 0.20 -1.39 16 27 C 0.40 7.05 6.96 28.37 0.20 7.25 16 28 O -0.49 -11.82 17.41 -3.19 -0.06 -11.87 16 29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 2.44 6.30 -2.38 -0.02 2.43 16 31 H 0.05 2.28 6.86 -2.39 -0.02 2.27 16 32 H 0.01 0.45 7.93 -2.39 -0.02 0.43 16 33 H -0.04 -2.01 8.12 -2.38 -0.02 -2.03 16 34 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 35 H 0.04 1.27 8.12 -2.39 -0.02 1.25 16 36 H 0.08 2.36 7.93 -2.39 -0.02 2.34 16 37 H 0.38 8.72 9.05 -74.06 -0.67 8.05 16 38 H 0.09 1.47 7.64 -2.39 -0.02 1.45 16 39 H 0.09 1.42 7.64 -2.39 -0.02 1.40 16 40 H 0.15 2.21 6.25 -2.91 -0.02 2.19 16 41 H 0.14 2.49 7.81 -2.91 -0.02 2.47 16 42 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 43 H 0.16 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 45 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 46 H 0.13 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -73.69 381.85 -0.55 -74.24 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.34 Total: 12.91 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: 4.78 Total: -8.44 kcal Atomic # 7 Polarization: -77.98 SS G_CDS: -4.00 Total: -81.97 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -3.70 Total: -42.98 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -73.69 -0.55 -74.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416407859.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.172 kcal (2) G-P(sol) polarization free energy of solvation -73.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds