Wall clock time and date at job start Tue Mar 31 2020 19:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34235 * 116.99862 * 2 1 4 4 O 1.20828 * 119.99685 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99847 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.46812 * 180.02562 * 5 3 2 7 7 C 1.36930 * 119.99788 * 269.28628 * 6 5 3 8 8 H 1.08004 * 120.00069 * 189.45152 * 7 6 5 9 9 C 1.38816 * 120.00386 * 9.45391 * 7 6 5 10 10 N 1.31622 * 119.99705 * 24.60619 * 9 7 6 11 11 Si 1.86795 * 120.00443 * 204.60586 * 9 7 6 12 12 H 1.48497 * 109.47405 * 85.09242 * 11 9 7 13 13 H 1.48500 * 109.47321 * 205.09794 * 11 9 7 14 14 H 1.48502 * 109.46901 * 325.09533 * 11 9 7 15 15 C 1.46501 * 119.99730 * 89.28785 * 6 5 3 16 16 C 1.52997 * 109.46860 * 269.99291 * 15 6 5 17 17 C 1.53005 * 109.46662 * 180.02562 * 16 15 6 18 18 H 1.09000 * 109.47427 * 305.00475 * 17 16 15 19 19 C 1.50696 * 109.46942 * 65.00684 * 17 16 15 20 20 O 1.20827 * 120.00312 * 359.97438 * 19 17 16 21 21 O 1.34234 * 120.00143 * 179.97438 * 19 17 16 22 22 C 1.45199 * 117.00343 * 179.97438 * 21 19 17 23 23 C 1.50702 * 109.46787 * 185.00550 * 17 16 15 24 24 C 1.38232 * 119.99916 * 299.72424 * 23 17 16 25 25 C 1.38238 * 120.00269 * 179.78871 * 24 23 17 26 26 C 1.38243 * 119.99552 * 0.44821 * 25 24 23 27 27 C 1.38240 * 120.00114 * 359.80782 * 26 25 24 28 28 C 1.38234 * 119.99661 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47253 * 59.99647 * 1 2 3 30 30 H 1.08998 * 109.46519 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46750 * 299.99858 * 1 2 3 32 32 H 1.08992 * 109.47397 * 60.00355 * 5 3 2 33 33 H 1.08996 * 109.47156 * 299.99937 * 5 3 2 34 34 H 0.97001 * 120.00365 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47288 * 30.00185 * 15 6 5 36 36 H 1.09006 * 109.46295 * 150.00281 * 15 6 5 37 37 H 1.08993 * 109.47900 * 300.00519 * 16 15 6 38 38 H 1.09006 * 109.46858 * 60.01334 * 16 15 6 39 39 H 1.09000 * 109.46893 * 180.02562 * 22 21 19 40 40 H 1.08999 * 109.47220 * 300.00343 * 22 21 19 41 41 H 1.09006 * 109.46699 * 60.00289 * 22 21 19 42 42 H 1.08000 * 120.00126 * 0.02562 * 24 23 17 43 43 H 1.07998 * 120.00559 * 180.27715 * 25 24 23 44 44 H 1.08002 * 119.99907 * 179.83444 * 26 25 24 45 45 H 1.07996 * 119.99955 * 180.02562 * 27 26 25 46 46 H 1.08005 * 119.99715 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6799 0.0002 7 6 4.1894 3.3330 -1.1853 8 1 4.6398 4.3146 -1.1893 9 6 3.8211 2.7335 -2.3819 10 7 2.8759 1.8176 -2.3955 11 14 4.6668 3.2265 -3.9728 12 1 5.9179 2.4425 -4.1320 13 1 3.7627 2.9543 -5.1190 14 1 4.9921 4.6749 -3.9322 15 6 4.1747 3.3859 1.2692 16 6 2.8587 4.0407 1.6938 17 6 3.0606 4.7786 3.0188 18 1 3.4624 4.0891 3.7612 19 6 4.0259 5.9181 2.8172 20 8 4.5039 6.1191 1.7258 21 8 4.3549 6.7099 3.8501 22 6 5.2908 7.7873 3.5829 23 6 1.7384 5.3193 3.4991 24 6 1.0381 6.2231 2.7222 25 6 -0.1769 6.7158 3.1606 26 6 -0.6870 6.3117 4.3803 27 6 0.0159 5.4119 5.1596 28 6 1.2287 4.9159 4.7190 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9557 0.7811 -0.8908 33 1 3.9564 0.7807 0.8891 34 1 2.6187 1.3984 -3.2316 35 1 4.4917 2.6776 2.0345 36 1 4.9389 4.1533 1.1453 37 1 2.5417 4.7491 0.9284 38 1 2.0945 3.2734 1.8176 39 1 5.4704 8.3483 4.5000 40 1 6.2312 7.3707 3.2221 41 1 4.8735 8.4516 2.8260 42 1 1.4382 6.5414 1.7709 43 1 -0.7262 7.4185 2.5517 44 1 -1.6349 6.6987 4.7241 45 1 -0.3828 5.0959 6.1123 46 1 1.7776 4.2126 5.3277 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425411265.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:27 Heat of formation + Delta-G solvation = -114.564731 kcal Electronic energy + Delta-G solvation = -30248.899081 eV Core-core repulsion = 26105.184697 eV Total energy + Delta-G solvation = -4143.714385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.60050 -38.98873 -38.86652 -36.73120 -35.90932 -34.58575 -33.95183 -31.47145 -30.83556 -29.61785 -28.25247 -27.72314 -26.05088 -25.74554 -23.19767 -22.57754 -22.09746 -20.92973 -19.79535 -19.55910 -17.61184 -16.94483 -16.76029 -16.45891 -16.16634 -15.93560 -15.47296 -15.09065 -15.03716 -14.61328 -14.55751 -13.93858 -13.72524 -13.40692 -13.31239 -13.14855 -12.94321 -12.59046 -12.43968 -12.15966 -12.00898 -11.91994 -11.70258 -11.35353 -11.17646 -11.06478 -10.96674 -10.78024 -10.76212 -10.62162 -10.45189 -10.34013 -10.07994 -9.82356 -9.65373 -9.44617 -8.98456 -8.83761 -8.65760 -8.42482 -7.03379 -5.85485 -3.10999 1.37929 1.48221 2.44925 2.89906 3.42275 3.49024 3.50982 3.86064 3.94126 4.12567 4.54112 4.73655 4.87029 5.00890 5.05691 5.14427 5.17887 5.21530 5.24299 5.35240 5.42388 5.53627 5.57705 5.66159 5.81174 5.84342 5.90168 6.01983 6.07189 6.11862 6.14664 6.33715 6.36631 6.47071 6.51547 6.56531 6.57161 6.65634 6.74039 6.99429 7.05660 7.13959 7.26824 7.79146 7.87872 8.00806 8.24581 9.11485 9.46682 9.80192 10.20891 11.26312 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010116 B = 0.004520 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.252370 B = 6192.856958 C = 7865.336896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.384 6.384 3 C 0.464 3.536 4 O -0.503 6.503 5 C 0.187 3.813 6 N -0.565 5.565 7 C -0.241 4.241 8 H 0.084 0.916 9 C -0.003 4.003 10 N -0.906 5.906 11 Si 0.907 3.093 12 H -0.287 1.287 13 H -0.294 1.294 14 H -0.281 1.281 15 C 0.139 3.861 16 C -0.116 4.116 17 C -0.041 4.041 18 H 0.108 0.892 19 C 0.463 3.537 20 O -0.482 6.482 21 O -0.361 6.361 22 C 0.035 3.965 23 C -0.067 4.067 24 C -0.104 4.104 25 C -0.117 4.117 26 C -0.124 4.124 27 C -0.122 4.122 28 C -0.107 4.107 29 H 0.052 0.948 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.114 0.886 33 H 0.050 0.950 34 H 0.256 0.744 35 H 0.035 0.965 36 H 0.069 0.931 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.122 0.878 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.139 4.854 15.756 16.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.302 6.302 3 C 0.304 3.696 4 O -0.388 6.388 5 C 0.057 3.943 6 N -0.283 5.283 7 C -0.370 4.370 8 H 0.102 0.898 9 C -0.200 4.200 10 N -0.553 5.553 11 Si 0.737 3.263 12 H -0.214 1.214 13 H -0.221 1.221 14 H -0.206 1.206 15 C 0.013 3.987 16 C -0.155 4.155 17 C -0.061 4.061 18 H 0.126 0.874 19 C 0.305 3.695 20 O -0.367 6.367 21 O -0.279 6.279 22 C -0.059 4.059 23 C -0.067 4.067 24 C -0.122 4.122 25 C -0.135 4.135 26 C -0.142 4.142 27 C -0.140 4.140 28 C -0.125 4.125 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.062 0.938 32 H 0.132 0.868 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.095 0.905 38 H 0.098 0.902 39 H 0.114 0.886 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.140 0.860 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.218 5.204 15.248 16.264 hybrid contribution -0.178 0.514 -1.178 1.298 sum -2.396 5.718 14.070 15.376 Atomic orbital electron populations 1.22823 0.80124 1.01109 1.01125 1.86560 1.20751 1.37038 1.85821 1.25635 0.93550 0.80175 0.70211 1.90449 1.66603 1.36280 1.45443 1.20515 0.85562 0.86823 1.01416 1.44256 1.75061 1.07066 1.01913 1.19378 1.32838 1.02061 0.82706 0.89835 1.24728 0.97606 0.99772 0.97893 1.69829 1.27803 1.31435 1.26191 0.86200 0.79108 0.78112 0.82857 1.21434 1.22069 1.20636 1.21201 0.95020 0.95056 0.87451 1.22376 1.01903 0.99847 0.91416 1.20324 0.90032 0.92841 1.02858 0.87358 1.23789 0.80713 0.82614 0.82388 1.90721 1.51062 1.69183 1.25758 1.86532 1.59549 1.41403 1.40370 1.23201 0.91999 0.88156 1.02561 1.19473 0.95297 0.97276 0.94683 1.21095 0.95103 0.96631 0.99369 1.21105 0.95846 1.00218 0.96376 1.21118 0.99798 0.98286 0.95002 1.21067 0.95211 0.97886 0.99833 1.21021 0.96264 0.99990 0.95270 0.92964 0.90348 0.93773 0.86844 0.93184 0.93369 0.94618 0.91274 0.90538 0.90219 0.88582 0.91942 0.92119 0.86020 0.86137 0.86332 0.86146 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.56 101.05 1.07 1.85 16 2 O -0.38 -8.44 10.57 -39.27 -0.41 -8.86 16 3 C 0.46 11.32 5.94 36.00 0.21 11.53 16 4 O -0.50 -13.51 13.41 -18.75 -0.25 -13.76 16 5 C 0.19 4.38 5.58 -5.19 -0.03 4.35 16 6 N -0.56 -13.88 2.09 -174.61 -0.37 -14.25 16 7 C -0.24 -6.60 9.70 -15.06 -0.15 -6.75 16 8 H 0.08 2.33 7.92 -52.48 -0.42 1.92 16 9 C 0.00 -0.09 4.89 -17.43 -0.09 -0.17 16 10 N -0.91 -25.87 8.99 55.49 0.50 -25.37 16 11 Si 0.91 22.14 29.62 -169.99 -5.03 17.11 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 C 0.14 2.89 5.45 -4.04 -0.02 2.87 16 16 C -0.12 -2.28 3.65 -26.73 -0.10 -2.38 16 17 C -0.04 -0.63 2.48 -92.92 -0.23 -0.86 16 18 H 0.11 1.42 7.88 -51.93 -0.41 1.01 16 19 C 0.46 7.56 6.60 36.00 0.24 7.80 16 20 O -0.48 -9.38 13.72 -18.75 -0.26 -9.63 16 21 O -0.36 -5.10 10.48 -39.27 -0.41 -5.51 16 22 C 0.03 0.38 10.56 101.05 1.07 1.45 16 23 C -0.07 -0.99 4.71 -104.62 -0.49 -1.49 16 24 C -0.10 -1.59 8.86 -39.58 -0.35 -1.94 16 25 C -0.12 -1.54 10.05 -39.58 -0.40 -1.94 16 26 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 27 C -0.12 -1.40 10.05 -39.58 -0.40 -1.79 16 28 C -0.11 -1.36 9.67 -39.58 -0.38 -1.74 16 29 H 0.05 1.02 8.13 -51.93 -0.42 0.60 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.76 8.13 -51.93 -0.42 0.34 16 32 H 0.11 2.88 6.31 -51.93 -0.33 2.55 16 33 H 0.05 1.00 7.90 -51.93 -0.41 0.59 16 34 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.04 0.64 7.90 -51.93 -0.41 0.23 16 36 H 0.07 1.49 5.84 -51.93 -0.30 1.19 16 37 H 0.08 1.78 7.40 -51.93 -0.38 1.39 16 38 H 0.08 1.70 6.31 -51.93 -0.33 1.38 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 41 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 42 H 0.12 2.01 7.65 -52.49 -0.40 1.61 16 43 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 45 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 46 H 0.12 1.28 7.95 -52.48 -0.42 0.87 16 LS Contribution 383.34 15.07 5.78 5.78 Total: -1.00 -33.51 383.34 -7.65 -41.16 By element: Atomic # 1 Polarization: 11.16 SS G_CDS: -6.75 Total: 4.41 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -0.45 Total: 8.93 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: 0.13 Total: -39.62 kcal Atomic # 8 Polarization: -36.43 SS G_CDS: -1.34 Total: -37.77 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.51 -7.65 -41.16 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425411265.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.406 kcal (2) G-P(sol) polarization free energy of solvation -33.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds