Wall clock time and date at job start Tue Mar 31 2020 19:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34235 * 116.99862 * 2 1 4 4 O 1.20828 * 119.99685 * 359.97438 * 3 2 1 5 5 C 1.50696 * 119.99847 * 180.02562 * 3 2 1 6 6 N 1.46507 * 109.46812 * 180.02562 * 5 3 2 7 7 C 1.36930 * 119.99788 * 269.28628 * 6 5 3 8 8 H 1.08004 * 120.00069 * 189.45152 * 7 6 5 9 9 C 1.38816 * 120.00386 * 9.45391 * 7 6 5 10 10 N 1.31622 * 119.99705 * 24.60619 * 9 7 6 11 11 Si 1.86795 * 120.00443 * 204.60586 * 9 7 6 12 12 H 1.48497 * 109.47405 * 85.09242 * 11 9 7 13 13 H 1.48500 * 109.47321 * 205.09794 * 11 9 7 14 14 H 1.48502 * 109.46901 * 325.09533 * 11 9 7 15 15 C 1.46501 * 119.99730 * 89.28785 * 6 5 3 16 16 C 1.52997 * 109.46860 * 269.99291 * 15 6 5 17 17 C 1.53005 * 109.46662 * 180.02562 * 16 15 6 18 18 H 1.09000 * 109.47427 * 305.00475 * 17 16 15 19 19 C 1.50696 * 109.46942 * 65.00684 * 17 16 15 20 20 O 1.20827 * 120.00312 * 359.97438 * 19 17 16 21 21 O 1.34234 * 120.00143 * 179.97438 * 19 17 16 22 22 C 1.45199 * 117.00343 * 179.97438 * 21 19 17 23 23 C 1.50702 * 109.46787 * 185.00550 * 17 16 15 24 24 C 1.38232 * 119.99916 * 299.72424 * 23 17 16 25 25 C 1.38238 * 120.00269 * 179.78871 * 24 23 17 26 26 C 1.38243 * 119.99552 * 0.44821 * 25 24 23 27 27 C 1.38240 * 120.00114 * 359.80782 * 26 25 24 28 28 C 1.38234 * 119.99661 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47253 * 59.99647 * 1 2 3 30 30 H 1.08998 * 109.46519 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46750 * 299.99858 * 1 2 3 32 32 H 1.08992 * 109.47397 * 60.00355 * 5 3 2 33 33 H 1.08996 * 109.47156 * 299.99937 * 5 3 2 34 34 H 0.97001 * 120.00365 * 180.02562 * 10 9 7 35 35 H 1.08993 * 109.47288 * 30.00185 * 15 6 5 36 36 H 1.09006 * 109.46295 * 150.00281 * 15 6 5 37 37 H 1.08993 * 109.47900 * 300.00519 * 16 15 6 38 38 H 1.09006 * 109.46858 * 60.01334 * 16 15 6 39 39 H 1.09000 * 109.46893 * 180.02562 * 22 21 19 40 40 H 1.08999 * 109.47220 * 300.00343 * 22 21 19 41 41 H 1.09006 * 109.46699 * 60.00289 * 22 21 19 42 42 H 1.08000 * 120.00126 * 0.02562 * 24 23 17 43 43 H 1.07998 * 120.00559 * 180.27715 * 25 24 23 44 44 H 1.08002 * 119.99907 * 179.83444 * 26 25 24 45 45 H 1.07996 * 119.99955 * 180.02562 * 27 26 25 46 46 H 1.08005 * 119.99715 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 3.9817 2.6799 0.0002 7 6 4.1894 3.3330 -1.1853 8 1 4.6398 4.3146 -1.1893 9 6 3.8211 2.7335 -2.3819 10 7 2.8759 1.8176 -2.3955 11 14 4.6668 3.2265 -3.9728 12 1 5.9179 2.4425 -4.1320 13 1 3.7627 2.9543 -5.1190 14 1 4.9921 4.6749 -3.9322 15 6 4.1747 3.3859 1.2692 16 6 2.8587 4.0407 1.6938 17 6 3.0606 4.7786 3.0188 18 1 3.4624 4.0891 3.7612 19 6 4.0259 5.9181 2.8172 20 8 4.5039 6.1191 1.7258 21 8 4.3549 6.7099 3.8501 22 6 5.2908 7.7873 3.5829 23 6 1.7384 5.3193 3.4991 24 6 1.0381 6.2231 2.7222 25 6 -0.1769 6.7158 3.1606 26 6 -0.6870 6.3117 4.3803 27 6 0.0159 5.4119 5.1596 28 6 1.2287 4.9159 4.7190 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.9557 0.7811 -0.8908 33 1 3.9564 0.7807 0.8891 34 1 2.6187 1.3984 -3.2316 35 1 4.4917 2.6776 2.0345 36 1 4.9389 4.1533 1.1453 37 1 2.5417 4.7491 0.9284 38 1 2.0945 3.2734 1.8176 39 1 5.4704 8.3483 4.5000 40 1 6.2312 7.3707 3.2221 41 1 4.8735 8.4516 2.8260 42 1 1.4382 6.5414 1.7709 43 1 -0.7262 7.4185 2.5517 44 1 -1.6349 6.6987 4.7241 45 1 -0.3828 5.0959 6.1123 46 1 1.7776 4.2126 5.3277 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425411265.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:41:26 Heat of formation + Delta-G solvation = -132.529194 kcal Electronic energy + Delta-G solvation = -30249.678079 eV Core-core repulsion = 26105.184697 eV Total energy + Delta-G solvation = -4144.493382 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85775 -40.73000 -40.01177 -38.21340 -37.46128 -36.39746 -35.42816 -33.32494 -31.82121 -31.10375 -29.70923 -29.03848 -27.63350 -27.30595 -24.88127 -23.61754 -23.27161 -22.51378 -21.48193 -21.00460 -18.99570 -18.62747 -18.06411 -17.97955 -17.66165 -17.26354 -17.08151 -16.82531 -16.48671 -16.11457 -15.69541 -15.58457 -15.28471 -14.68890 -14.58786 -14.40041 -14.23031 -13.96305 -13.85646 -13.77176 -13.43232 -13.27008 -13.18483 -12.96931 -12.75034 -12.66691 -12.54122 -12.31209 -12.15765 -12.03302 -11.93847 -11.86220 -11.77033 -11.70149 -11.32859 -11.12668 -10.89553 -10.49350 -9.83003 -9.69056 -9.00240 -7.96211 -5.21960 0.36260 0.48854 1.17488 1.45582 1.46590 1.54877 1.76191 2.07381 2.37189 2.57147 2.84818 3.23855 3.49434 3.61834 3.80131 3.90426 4.12408 4.19068 4.28704 4.30766 4.31621 4.34053 4.41231 4.47466 4.49375 4.56746 4.59364 4.66451 4.68287 4.72344 4.77854 4.85853 4.98114 5.06880 5.13731 5.21794 5.22518 5.36058 5.54848 5.60132 5.61605 5.64656 5.65233 6.02051 6.09810 6.22648 6.75819 7.05400 7.56330 7.83105 8.16849 9.12953 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010116 B = 0.004520 C = 0.003559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2767.252370 B = 6192.856958 C = 7865.336896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.387 6.387 3 C 0.466 3.534 4 O -0.536 6.536 5 C 0.185 3.815 6 N -0.578 5.578 7 C -0.248 4.248 8 H 0.067 0.933 9 C -0.048 4.048 10 N -0.926 5.926 11 Si 0.964 3.036 12 H -0.277 1.277 13 H -0.300 1.300 14 H -0.283 1.283 15 C 0.137 3.863 16 C -0.092 4.092 17 C -0.034 4.034 18 H 0.142 0.858 19 C 0.469 3.531 20 O -0.524 6.524 21 O -0.357 6.357 22 C 0.027 3.973 23 C -0.086 4.086 24 C -0.133 4.133 25 C -0.129 4.129 26 C -0.121 4.121 27 C -0.118 4.118 28 C -0.108 4.108 29 H 0.030 0.970 30 H 0.124 0.876 31 H 0.052 0.948 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.249 0.751 35 H 0.071 0.929 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.063 0.937 39 H 0.136 0.864 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.090 0.910 43 H 0.131 0.869 44 H 0.150 0.850 45 H 0.157 0.843 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 4.192 18.853 19.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.304 6.304 3 C 0.308 3.692 4 O -0.423 6.423 5 C 0.056 3.944 6 N -0.297 5.297 7 C -0.377 4.377 8 H 0.085 0.915 9 C -0.242 4.242 10 N -0.573 5.573 11 Si 0.794 3.206 12 H -0.203 1.203 13 H -0.227 1.227 14 H -0.209 1.209 15 C 0.012 3.988 16 C -0.132 4.132 17 C -0.053 4.053 18 H 0.160 0.840 19 C 0.312 3.688 20 O -0.412 6.412 21 O -0.273 6.273 22 C -0.066 4.066 23 C -0.086 4.086 24 C -0.151 4.151 25 C -0.147 4.147 26 C -0.138 4.138 27 C -0.135 4.135 28 C -0.126 4.126 29 H 0.049 0.951 30 H 0.142 0.858 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.154 0.846 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.108 0.892 43 H 0.149 0.851 44 H 0.168 0.832 45 H 0.174 0.826 46 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -2.665 4.538 18.390 19.128 hybrid contribution -0.112 0.766 -2.037 2.179 sum -2.777 5.304 16.353 17.414 Atomic orbital electron populations 1.23109 0.77806 1.03936 1.00500 1.86508 1.22966 1.35618 1.85315 1.25690 0.93954 0.80240 0.69304 1.90442 1.67408 1.37465 1.46999 1.20526 0.85297 0.86351 1.02256 1.44365 1.75389 1.07704 1.02276 1.19422 1.32382 1.01578 0.84355 0.91517 1.25337 0.98220 1.00400 1.00278 1.69977 1.28749 1.32510 1.26106 0.85318 0.78254 0.77604 0.79462 1.20299 1.22656 1.20897 1.21334 0.95157 0.95436 0.86920 1.21912 1.00440 0.98368 0.92457 1.20191 0.91022 0.93011 1.01096 0.84024 1.23901 0.80013 0.82741 0.82097 1.90711 1.52730 1.70431 1.27374 1.86508 1.59957 1.41705 1.39176 1.23526 0.91133 0.87349 1.04554 1.19467 0.94994 0.98106 0.96034 1.21051 0.96779 0.98457 0.98860 1.21323 0.95193 1.00603 0.97604 1.21522 1.00776 0.97635 0.93911 1.21531 0.94368 0.96718 1.00905 1.21359 0.96915 1.00010 0.94333 0.95068 0.85764 0.92968 0.88927 0.89132 0.94130 0.91033 0.92473 0.95448 0.91835 0.84609 0.91937 0.92900 0.89210 0.85108 0.83234 0.82558 0.83193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.43 10.56 113.37 1.20 2.62 16 2 O -0.39 -16.73 10.57 -51.47 -0.54 -17.27 16 3 C 0.47 22.91 5.94 71.23 0.42 23.33 16 4 O -0.54 -29.58 13.41 21.96 0.29 -29.28 16 5 C 0.18 8.70 5.58 85.63 0.48 9.17 16 6 N -0.58 -29.08 2.09 -706.35 -1.48 -30.56 16 7 C -0.25 -14.08 9.70 84.04 0.82 -13.26 16 8 H 0.07 3.93 7.92 -2.91 -0.02 3.91 16 9 C -0.05 -2.72 4.89 84.86 0.42 -2.31 16 10 N -0.93 -54.29 8.99 21.65 0.19 -54.10 16 11 Si 0.96 46.87 29.62 68.60 2.03 48.90 16 12 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 14 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 15 C 0.14 5.76 5.45 86.38 0.47 6.23 16 16 C -0.09 -3.76 3.65 30.59 0.11 -3.65 16 17 C -0.03 -1.05 2.48 -12.29 -0.03 -1.08 16 18 H 0.14 3.40 7.88 -2.39 -0.02 3.38 16 19 C 0.47 15.59 6.60 71.23 0.47 16.06 16 20 O -0.52 -21.50 13.72 21.96 0.30 -21.20 16 21 O -0.36 -9.79 10.48 -51.46 -0.54 -10.33 16 22 C 0.03 0.58 10.56 113.37 1.20 1.78 16 23 C -0.09 -2.51 4.71 -19.87 -0.09 -2.61 16 24 C -0.13 -4.27 8.86 22.27 0.20 -4.07 16 25 C -0.13 -3.36 10.05 22.27 0.22 -3.14 16 26 C -0.12 -2.48 10.05 22.27 0.22 -2.25 16 27 C -0.12 -2.25 10.05 22.27 0.22 -2.03 16 28 C -0.11 -2.44 9.67 22.27 0.22 -2.22 16 29 H 0.03 1.21 8.13 -2.39 -0.02 1.19 16 30 H 0.12 3.18 8.14 -2.39 -0.02 3.16 16 31 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 32 H 0.09 4.77 6.31 -2.39 -0.02 4.75 16 33 H 0.09 3.45 7.90 -2.39 -0.02 3.43 16 34 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 35 H 0.07 2.46 7.90 -2.39 -0.02 2.45 16 36 H 0.06 2.55 5.84 -2.38 -0.01 2.54 16 37 H 0.03 1.36 7.40 -2.39 -0.02 1.34 16 38 H 0.06 2.79 6.31 -2.38 -0.02 2.77 16 39 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 41 H 0.05 1.20 8.13 -2.38 -0.02 1.18 16 42 H 0.09 3.34 7.65 -2.91 -0.02 3.31 16 43 H 0.13 2.96 8.06 -2.91 -0.02 2.93 16 44 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 45 H 0.16 1.88 8.06 -2.91 -0.02 1.86 16 46 H 0.15 2.49 7.95 -2.91 -0.02 2.47 16 Total: -1.00 -77.07 383.34 7.77 -69.29 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: 0.98 Total: 21.96 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: 6.54 Total: 22.58 kcal Atomic # 7 Polarization: -83.37 SS G_CDS: -1.28 Total: -84.66 kcal Atomic # 8 Polarization: -77.59 SS G_CDS: -0.49 Total: -78.08 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -77.07 7.77 -69.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425411265.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.235 kcal (2) G-P(sol) polarization free energy of solvation -77.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds