Wall clock time and date at job start Tue Mar 31 2020 18:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21277 * 120.00336 * 2 1 4 4 N 1.34778 * 119.99430 * 180.02562 * 2 1 3 5 5 C 1.38998 * 120.00247 * 9.16261 * 4 2 1 6 6 N 1.29612 * 124.94815 * 36.04690 * 5 4 2 7 7 C 1.31988 * 116.92400 * 179.97438 * 6 5 4 8 8 C 1.50698 * 122.72122 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47464 * 275.00398 * 8 7 6 10 10 C 1.46901 * 111.00237 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47397 * 185.24131 * 10 9 8 12 12 C 1.50700 * 115.54747 * 51.55113 * 11 10 9 13 13 H 1.07999 * 120.00219 * 270.32035 * 12 11 10 14 14 C 1.37878 * 120.00013 * 90.33083 * 12 11 10 15 15 N 1.31513 * 120.00050 * 3.61682 * 14 12 11 16 16 Si 1.86801 * 120.00288 * 183.62585 * 14 12 11 17 17 H 1.48500 * 109.47159 * 59.99092 * 16 14 12 18 18 H 1.48497 * 109.47427 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46830 * 299.99819 * 16 14 12 20 20 C 1.53004 * 117.50114 * 265.88603 * 11 10 9 21 21 C 1.52997 * 117.50218 * 197.22341 * 11 10 9 22 22 C 1.33448 * 114.56727 * 359.97438 * 7 6 5 23 23 S 1.70969 * 124.94310 * 215.74207 * 5 4 2 24 24 C 1.46505 * 119.99434 * 189.16331 * 4 2 1 25 25 C 1.52995 * 117.50138 * 16.52074 * 24 4 2 26 26 C 1.52993 * 117.49885 * 307.89830 * 24 4 2 27 27 H 1.08995 * 109.47125 * 66.68252 * 1 2 3 28 28 H 1.08999 * 109.46886 * 306.68421 * 1 2 3 29 29 H 1.08997 * 109.47276 * 186.68822 * 1 2 3 30 30 H 1.09002 * 109.46567 * 35.00641 * 8 7 6 31 31 H 1.09000 * 109.47037 * 154.99689 * 8 7 6 32 32 H 1.00896 * 110.99785 * 303.95416 * 9 8 7 33 33 H 1.09007 * 109.47112 * 305.24310 * 10 9 8 34 34 H 1.08999 * 109.46757 * 65.24123 * 10 9 8 35 35 H 0.97004 * 120.00324 * 180.02562 * 15 14 12 36 36 H 1.08996 * 117.49443 * 359.97438 * 20 11 10 37 37 H 1.08991 * 117.50263 * 145.01674 * 20 11 10 38 38 H 1.09001 * 117.49963 * 214.98008 * 21 11 10 39 39 H 1.08997 * 117.49594 * 359.97438 * 21 11 10 40 40 H 1.07997 * 125.97051 * 179.97438 * 22 7 6 41 41 H 1.09001 * 115.54858 * 162.23173 * 24 4 2 42 42 H 1.09000 * 117.49980 * 0.02562 * 25 24 4 43 43 H 1.09007 * 117.49925 * 145.01643 * 25 24 4 44 44 H 1.09005 * 117.50076 * 214.97944 * 26 24 4 45 45 H 1.09001 * 117.50346 * 0.02562 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4990 -2.3632 -0.1927 6 7 0.4820 -2.5197 -0.9808 7 6 -0.0455 -3.7280 -1.0430 8 6 -1.2299 -4.0558 -1.9152 9 7 -2.4704 -3.7293 -1.1995 10 6 -3.6488 -4.0360 -2.0214 11 6 -4.9118 -3.5635 -1.2986 12 6 -4.8920 -2.1336 -0.8230 13 1 -4.5164 -1.8971 0.1616 14 6 -5.3535 -1.1273 -1.6448 15 7 -5.8766 -1.4218 -2.8149 16 14 -5.2357 0.6545 -1.0963 17 1 -3.8123 1.0071 -0.8618 18 1 -5.7960 1.5356 -2.1521 19 1 -6.0044 0.8372 0.1610 20 6 -5.6559 -4.5847 -0.4358 21 6 -6.2511 -4.1322 -1.7715 22 6 0.5549 -4.6360 -0.2711 23 16 1.8846 -3.8438 0.5703 24 6 3.6318 -1.1755 0.2015 25 6 4.2711 0.0865 0.7841 26 6 4.4746 -0.2628 -0.6915 27 1 -0.3633 0.4068 -0.9437 28 1 -0.3633 0.6139 0.8241 29 1 -0.3634 -1.0206 0.1197 30 1 -1.1765 -3.4726 -2.8346 31 1 -1.2193 -5.1184 -2.1580 32 1 -2.5131 -4.2086 -0.3127 33 1 -3.5660 -3.5243 -2.9804 34 1 -3.7060 -5.1117 -2.1872 35 1 -6.2009 -0.7138 -3.3933 36 1 -5.2459 -5.5932 -0.3835 37 1 -6.1314 -4.2223 0.4755 38 1 -7.1180 -3.4722 -1.7384 39 1 -6.2324 -4.8426 -2.5979 40 1 0.2762 -5.6754 -0.1803 41 1 4.0612 -2.1356 0.4877 42 1 3.6121 0.9228 1.0175 43 1 5.1213 -0.0431 1.4539 44 1 5.4586 -0.6222 -0.9925 45 1 3.9495 0.3442 -1.4291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430075788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:46 Heat of formation + Delta-G solvation = 96.467024 kcal Electronic energy + Delta-G solvation = -26656.748592 eV Core-core repulsion = 22997.230853 eV Total energy + Delta-G solvation = -3659.517739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.11007 -39.64584 -37.02389 -36.80332 -35.15986 -33.86219 -31.73516 -29.89213 -29.56125 -26.98477 -25.41180 -24.70539 -23.52447 -22.86254 -22.64645 -20.97884 -20.16675 -19.56115 -19.00815 -18.37915 -17.05682 -16.58274 -16.07388 -15.68829 -15.04589 -14.96772 -14.70928 -14.44218 -14.25826 -13.94930 -13.75740 -13.47805 -13.40260 -13.38623 -12.62063 -12.32117 -12.29720 -12.13869 -11.99006 -11.61360 -11.36453 -11.29945 -11.06543 -10.80399 -10.78584 -10.67727 -10.40698 -10.08410 -9.98291 -9.94099 -9.62184 -9.38758 -9.25352 -8.88496 -8.30186 -8.24241 -7.98559 -7.58331 -5.87832 -3.90079 0.52832 0.92543 1.53759 2.18679 2.36390 2.78937 3.41167 3.45577 3.49517 3.55328 4.09747 4.41040 4.53828 4.58408 4.72340 4.83420 4.92890 5.10442 5.18559 5.34229 5.38045 5.45248 5.51040 5.52887 5.65041 5.69270 5.72355 5.82723 5.98760 6.10915 6.18767 6.21489 6.26913 6.30561 6.49561 6.59554 6.78127 6.90083 6.91577 7.19840 7.48164 7.58725 7.61467 7.85222 7.92769 8.02857 8.10861 8.60434 9.07849 9.72943 11.20903 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.003648 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.464236 B = 7673.255713 C = 9385.628423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.537 3.463 3 O -0.518 6.518 4 N -0.503 5.503 5 C 0.266 3.734 6 N -0.465 5.465 7 C 0.114 3.886 8 C 0.130 3.870 9 N -0.655 5.655 10 C 0.109 3.891 11 C 0.045 3.955 12 C -0.462 4.462 13 H 0.057 0.943 14 C 0.069 3.931 15 N -0.888 5.888 16 Si 0.886 3.114 17 H -0.275 1.275 18 H -0.291 1.291 19 H -0.281 1.281 20 C -0.221 4.221 21 C -0.146 4.146 22 C -0.264 4.264 23 S 0.122 5.878 24 C 0.054 3.946 25 C -0.178 4.178 26 C -0.175 4.175 27 H 0.105 0.895 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.332 0.668 33 H 0.070 0.930 34 H -0.002 1.002 35 H 0.257 0.743 36 H 0.058 0.942 37 H 0.075 0.925 38 H 0.087 0.913 39 H 0.057 0.943 40 H 0.180 0.820 41 H 0.134 0.866 42 H 0.134 0.866 43 H 0.098 0.902 44 H 0.102 0.898 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.904 -6.289 5.784 20.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.328 3.672 3 O -0.394 6.394 4 N -0.232 5.232 5 C -0.101 4.101 6 N -0.186 5.186 7 C -0.019 4.019 8 C -0.002 4.002 9 N -0.285 5.285 10 C -0.020 4.020 11 C 0.045 3.955 12 C -0.500 4.500 13 H 0.075 0.925 14 C -0.132 4.132 15 N -0.526 5.526 16 Si 0.714 3.286 17 H -0.200 1.200 18 H -0.217 1.217 19 H -0.206 1.206 20 C -0.258 4.258 21 C -0.184 4.184 22 C -0.404 4.404 23 S 0.373 5.627 24 C -0.050 4.050 25 C -0.216 4.216 26 C -0.214 4.214 27 H 0.123 0.877 28 H 0.110 0.890 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.149 0.851 33 H 0.089 0.911 34 H 0.016 0.984 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.197 0.803 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.116 0.884 44 H 0.120 0.880 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 19.746 -4.737 5.854 21.133 hybrid contribution -0.708 -0.300 -0.353 0.846 sum 19.037 -5.037 5.501 20.446 Atomic orbital electron populations 1.22053 0.88940 1.06800 1.05523 1.21356 0.91505 0.81466 0.72911 1.90579 1.70398 1.30568 1.47823 1.44475 1.06400 1.03242 1.69055 1.23241 0.96852 0.92297 0.97661 1.66386 1.10207 1.23816 1.18181 1.20043 0.97883 0.85748 0.98197 1.20489 0.86116 0.98001 0.95627 1.60186 0.99499 1.63023 1.05812 1.21550 0.89622 0.93979 0.96822 1.18837 0.87763 0.92762 0.96184 1.20164 1.40342 0.88777 1.00720 0.92516 1.24891 0.94907 0.98388 0.95046 1.69998 1.40746 1.32121 1.09758 0.86772 0.78501 0.85393 0.77946 1.20029 1.21665 1.20641 1.23087 1.09090 0.98055 0.95555 1.22441 1.00473 1.01709 0.93804 1.26708 1.01743 1.05662 1.06297 1.83797 1.32480 1.02608 1.43828 1.21922 0.77476 0.97664 1.07897 1.23792 1.02457 0.98967 0.96342 1.23318 1.00557 1.02579 0.94916 0.87672 0.88986 0.88146 0.89381 0.94320 0.85073 0.91137 0.98431 0.93373 0.92379 0.90647 0.89432 0.92405 0.80274 0.84881 0.84783 0.88366 0.88005 0.87882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 9.59 36.01 0.35 -2.35 16 2 C 0.54 8.06 7.50 -10.98 -0.08 7.98 16 3 O -0.52 -8.43 12.84 5.56 0.07 -8.36 16 4 N -0.50 -6.60 3.04 -110.30 -0.34 -6.93 16 5 C 0.27 3.53 6.59 -87.36 -0.58 2.96 16 6 N -0.47 -7.13 8.07 -11.28 -0.09 -7.22 16 7 C 0.11 1.59 6.25 -84.20 -0.53 1.07 16 8 C 0.13 1.96 6.11 -4.98 -0.03 1.93 16 9 N -0.66 -12.05 6.07 -115.06 -0.70 -12.75 16 10 C 0.11 2.26 5.62 -3.82 -0.02 2.24 16 11 C 0.05 1.07 1.82 -155.66 -0.28 0.79 16 12 C -0.46 -12.32 8.48 -34.44 -0.29 -12.61 16 13 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 14 C 0.07 1.89 5.42 -17.82 -0.10 1.79 16 15 N -0.89 -25.11 12.24 55.43 0.68 -24.43 16 16 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 C -0.22 -4.68 9.91 -26.69 -0.26 -4.95 16 21 C -0.15 -3.40 8.97 -26.69 -0.24 -3.64 16 22 C -0.26 -2.91 11.09 29.06 0.32 -2.59 16 23 S 0.12 1.23 22.26 -107.50 -2.39 -1.16 16 24 C 0.05 0.56 6.44 -67.93 -0.44 0.12 16 25 C -0.18 -1.79 9.62 -26.74 -0.26 -2.05 16 26 C -0.18 -1.77 9.86 -26.74 -0.26 -2.03 16 27 H 0.10 1.72 8.14 -51.93 -0.42 1.29 16 28 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.10 1.67 5.32 -51.93 -0.28 1.39 16 30 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.04 0.50 8.10 -51.93 -0.42 0.08 16 32 H 0.33 5.74 8.78 -39.29 -0.34 5.39 16 33 H 0.07 1.63 8.13 -51.93 -0.42 1.21 16 34 H 0.00 -0.04 8.07 -51.93 -0.42 -0.46 16 35 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.09 2.23 7.90 -51.93 -0.41 1.82 16 39 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 40 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.13 1.08 7.42 -51.93 -0.39 0.69 16 42 H 0.13 1.70 5.35 -51.93 -0.28 1.42 16 43 H 0.10 0.73 8.14 -51.92 -0.42 0.31 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.10 1.28 7.49 -51.93 -0.39 0.89 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -29.84 384.52 -11.39 -41.23 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.70 Total: 8.61 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: -2.70 Total: -11.33 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.45 Total: -51.33 kcal Atomic # 8 Polarization: -8.43 SS G_CDS: 0.07 Total: -8.36 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.39 Total: -1.16 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.84 -11.39 -41.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430075788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.698 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.231 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds