Wall clock time and date at job start Tue Mar 31 2020 18:06:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21277 * 120.00336 * 2 1 4 4 N 1.34778 * 119.99430 * 180.02562 * 2 1 3 5 5 C 1.38998 * 120.00247 * 9.16261 * 4 2 1 6 6 N 1.29612 * 124.94815 * 36.04690 * 5 4 2 7 7 C 1.31988 * 116.92400 * 179.97438 * 6 5 4 8 8 C 1.50698 * 122.72122 * 179.97438 * 7 6 5 9 9 N 1.46894 * 109.47464 * 275.00398 * 8 7 6 10 10 C 1.46901 * 111.00237 * 179.97438 * 9 8 7 11 11 C 1.52999 * 109.47397 * 185.24131 * 10 9 8 12 12 C 1.50700 * 115.54747 * 51.55113 * 11 10 9 13 13 H 1.07999 * 120.00219 * 270.32035 * 12 11 10 14 14 C 1.37878 * 120.00013 * 90.33083 * 12 11 10 15 15 N 1.31513 * 120.00050 * 3.61682 * 14 12 11 16 16 Si 1.86801 * 120.00288 * 183.62585 * 14 12 11 17 17 H 1.48500 * 109.47159 * 59.99092 * 16 14 12 18 18 H 1.48497 * 109.47427 * 179.97438 * 16 14 12 19 19 H 1.48502 * 109.46830 * 299.99819 * 16 14 12 20 20 C 1.53004 * 117.50114 * 265.88603 * 11 10 9 21 21 C 1.52997 * 117.50218 * 197.22341 * 11 10 9 22 22 C 1.33448 * 114.56727 * 359.97438 * 7 6 5 23 23 S 1.70969 * 124.94310 * 215.74207 * 5 4 2 24 24 C 1.46505 * 119.99434 * 189.16331 * 4 2 1 25 25 C 1.52995 * 117.50138 * 16.52074 * 24 4 2 26 26 C 1.52993 * 117.49885 * 307.89830 * 24 4 2 27 27 H 1.08995 * 109.47125 * 66.68252 * 1 2 3 28 28 H 1.08999 * 109.46886 * 306.68421 * 1 2 3 29 29 H 1.08997 * 109.47276 * 186.68822 * 1 2 3 30 30 H 1.09002 * 109.46567 * 35.00641 * 8 7 6 31 31 H 1.09000 * 109.47037 * 154.99689 * 8 7 6 32 32 H 1.00896 * 110.99785 * 303.95416 * 9 8 7 33 33 H 1.09007 * 109.47112 * 305.24310 * 10 9 8 34 34 H 1.08999 * 109.46757 * 65.24123 * 10 9 8 35 35 H 0.97004 * 120.00324 * 180.02562 * 15 14 12 36 36 H 1.08996 * 117.49443 * 359.97438 * 20 11 10 37 37 H 1.08991 * 117.50263 * 145.01674 * 20 11 10 38 38 H 1.09001 * 117.49963 * 214.98008 * 21 11 10 39 39 H 1.08997 * 117.49594 * 359.97438 * 21 11 10 40 40 H 1.07997 * 125.97051 * 179.97438 * 22 7 6 41 41 H 1.09001 * 115.54858 * 162.23173 * 24 4 2 42 42 H 1.09000 * 117.49980 * 0.02562 * 25 24 4 43 43 H 1.09007 * 117.49925 * 145.01643 * 25 24 4 44 44 H 1.09005 * 117.50076 * 214.97944 * 26 24 4 45 45 H 1.09001 * 117.50346 * 0.02562 * 26 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 1.4990 -2.3632 -0.1927 6 7 0.4820 -2.5197 -0.9808 7 6 -0.0455 -3.7280 -1.0430 8 6 -1.2299 -4.0558 -1.9152 9 7 -2.4704 -3.7293 -1.1995 10 6 -3.6488 -4.0360 -2.0214 11 6 -4.9118 -3.5635 -1.2986 12 6 -4.8920 -2.1336 -0.8230 13 1 -4.5164 -1.8971 0.1616 14 6 -5.3535 -1.1273 -1.6448 15 7 -5.8766 -1.4218 -2.8149 16 14 -5.2357 0.6545 -1.0963 17 1 -3.8123 1.0071 -0.8618 18 1 -5.7960 1.5356 -2.1521 19 1 -6.0044 0.8372 0.1610 20 6 -5.6559 -4.5847 -0.4358 21 6 -6.2511 -4.1322 -1.7715 22 6 0.5549 -4.6360 -0.2711 23 16 1.8846 -3.8438 0.5703 24 6 3.6318 -1.1755 0.2015 25 6 4.2711 0.0865 0.7841 26 6 4.4746 -0.2628 -0.6915 27 1 -0.3633 0.4068 -0.9437 28 1 -0.3633 0.6139 0.8241 29 1 -0.3634 -1.0206 0.1197 30 1 -1.1765 -3.4726 -2.8346 31 1 -1.2193 -5.1184 -2.1580 32 1 -2.5131 -4.2086 -0.3127 33 1 -3.5660 -3.5243 -2.9804 34 1 -3.7060 -5.1117 -2.1872 35 1 -6.2009 -0.7138 -3.3933 36 1 -5.2459 -5.5932 -0.3835 37 1 -6.1314 -4.2223 0.4755 38 1 -7.1180 -3.4722 -1.7384 39 1 -6.2324 -4.8426 -2.5979 40 1 0.2762 -5.6754 -0.1803 41 1 4.0612 -2.1356 0.4877 42 1 3.6121 0.9228 1.0175 43 1 5.1213 -0.0431 1.4539 44 1 5.4586 -0.6222 -0.9925 45 1 3.9495 0.3442 -1.4291 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430075788.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:45 Heat of formation + Delta-G solvation = 79.503670 kcal Electronic energy + Delta-G solvation = -26657.484178 eV Core-core repulsion = 22997.230853 eV Total energy + Delta-G solvation = -3660.253325 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 335.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.12713 -40.66936 -38.71004 -37.81093 -36.32066 -35.12959 -33.79837 -30.99641 -30.74095 -28.29216 -27.28255 -25.92802 -24.69580 -24.01343 -23.42822 -22.75591 -21.27297 -20.80534 -20.51371 -19.40310 -18.19777 -17.77816 -17.60464 -16.75238 -16.71167 -16.23154 -15.97712 -15.68220 -15.56173 -15.21500 -15.03459 -14.83980 -14.72886 -14.32360 -14.13445 -13.60644 -13.47694 -13.35643 -13.27113 -13.14815 -12.90191 -12.77825 -12.60314 -12.36013 -12.25070 -12.14564 -11.90713 -11.55718 -11.21416 -11.03351 -10.87254 -10.81291 -10.60840 -10.26765 -10.16822 -9.83224 -9.23061 -8.95975 -7.98051 -6.03128 -0.40420 0.03360 0.63176 1.09550 1.42115 1.42386 1.45538 1.50460 1.77069 2.50160 2.72633 3.09253 3.32042 3.46299 3.57653 3.73151 3.77070 3.90427 3.94235 4.19047 4.25320 4.37623 4.40173 4.44001 4.46951 4.56765 4.64687 4.71207 4.72761 4.79612 4.87274 4.90259 5.00051 5.03598 5.06950 5.14331 5.16987 5.33953 5.38881 5.74992 5.77435 5.86856 5.91085 6.36959 6.55211 6.59311 6.78280 6.86315 6.99891 7.61371 9.09476 Molecular weight = 335.14amu Principal moments of inertia in cm(-1) A = 0.012756 B = 0.003648 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.464236 B = 7673.255713 C = 9385.628423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.534 3.466 3 O -0.539 6.539 4 N -0.502 5.502 5 C 0.233 3.767 6 N -0.504 5.504 7 C 0.082 3.918 8 C 0.137 3.863 9 N -0.672 5.672 10 C 0.125 3.875 11 C 0.019 3.981 12 C -0.465 4.465 13 H 0.046 0.954 14 C 0.025 3.975 15 N -0.914 5.914 16 Si 0.932 3.068 17 H -0.277 1.277 18 H -0.292 1.292 19 H -0.275 1.275 20 C -0.190 4.190 21 C -0.157 4.157 22 C -0.246 4.246 23 S 0.212 5.788 24 C 0.046 3.954 25 C -0.175 4.175 26 C -0.176 4.176 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.091 0.909 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.340 0.660 33 H 0.036 0.964 34 H 0.023 0.977 35 H 0.253 0.747 36 H 0.093 0.907 37 H 0.070 0.930 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.212 0.788 41 H 0.164 0.836 42 H 0.105 0.895 43 H 0.131 0.869 44 H 0.132 0.868 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.254 -8.996 7.586 24.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.324 3.676 3 O -0.416 6.416 4 N -0.231 5.231 5 C -0.132 4.132 6 N -0.225 5.225 7 C -0.050 4.050 8 C 0.005 3.995 9 N -0.303 5.303 10 C -0.005 4.005 11 C 0.019 3.981 12 C -0.503 4.503 13 H 0.064 0.936 14 C -0.174 4.174 15 N -0.554 5.554 16 Si 0.760 3.240 17 H -0.202 1.202 18 H -0.218 1.218 19 H -0.200 1.200 20 C -0.227 4.227 21 C -0.195 4.195 22 C -0.387 4.387 23 S 0.463 5.537 24 C -0.056 4.056 25 C -0.212 4.212 26 C -0.215 4.215 27 H 0.105 0.895 28 H 0.117 0.883 29 H 0.109 0.891 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.159 0.841 33 H 0.054 0.946 34 H 0.041 0.959 35 H 0.062 0.938 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.089 0.911 40 H 0.229 0.771 41 H 0.181 0.819 42 H 0.123 0.877 43 H 0.149 0.851 44 H 0.150 0.850 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 22.116 -7.467 7.678 24.573 hybrid contribution -1.393 0.453 -0.853 1.695 sum 20.723 -7.013 6.825 22.918 Atomic orbital electron populations 1.21965 0.90037 1.06137 1.04837 1.21159 0.91224 0.82060 0.73119 1.90584 1.70617 1.31447 1.48982 1.44451 1.07482 1.02793 1.68362 1.23440 0.97300 0.93558 0.98893 1.66273 1.11405 1.25283 1.19578 1.19831 0.98644 0.86297 1.00183 1.20373 0.85299 0.99168 0.94636 1.59997 0.99954 1.64140 1.06229 1.21185 0.89419 0.94747 0.95108 1.18973 0.89105 0.92142 0.97909 1.20421 1.39049 0.90803 1.00072 0.93611 1.25449 0.95285 1.01292 0.95337 1.70098 1.42119 1.32554 1.10586 0.86024 0.78202 0.82152 0.77649 1.20216 1.21791 1.20009 1.23055 1.06726 0.98907 0.94021 1.22327 0.99316 1.01991 0.95887 1.27158 1.00912 1.06626 1.03973 1.83464 1.30263 0.98799 1.41178 1.22326 0.75993 0.99141 1.08180 1.23749 1.02834 0.97794 0.96848 1.23334 1.01555 1.02255 0.94331 0.89465 0.88290 0.89055 0.92006 0.91331 0.84130 0.94556 0.95936 0.93842 0.88897 0.91123 0.92547 0.91098 0.77120 0.81853 0.87688 0.85129 0.84959 0.90989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.54 9.59 71.24 0.68 -4.86 16 2 C 0.53 16.54 7.50 87.66 0.66 17.20 16 3 O -0.54 -18.29 12.84 -3.02 -0.04 -18.33 16 4 N -0.50 -12.88 3.04 -621.26 -1.89 -14.77 16 5 C 0.23 5.87 6.59 179.21 1.18 7.05 16 6 N -0.50 -15.29 8.07 -189.60 -1.53 -16.81 16 7 C 0.08 2.18 6.25 41.45 0.26 2.44 16 8 C 0.14 4.01 6.11 85.56 0.52 4.53 16 9 N -0.67 -24.20 6.07 -517.94 -3.15 -27.35 16 10 C 0.12 5.11 5.62 86.30 0.48 5.60 16 11 C 0.02 0.91 1.82 -52.93 -0.10 0.81 16 12 C -0.47 -25.16 8.48 25.60 0.22 -24.94 16 13 H 0.05 2.52 7.82 -2.91 -0.02 2.49 16 14 C 0.02 1.38 5.42 84.66 0.46 1.84 16 15 N -0.91 -53.20 12.24 21.45 0.26 -52.94 16 16 Si 0.93 45.43 29.54 68.60 2.03 47.46 16 17 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 18 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 19 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 20 C -0.19 -7.69 9.91 30.62 0.30 -7.39 16 21 C -0.16 -7.28 8.97 30.62 0.27 -7.00 16 22 C -0.25 -4.50 11.09 66.73 0.74 -3.76 16 23 S 0.21 3.45 22.26 -56.49 -1.26 2.19 16 24 C 0.05 0.87 6.44 44.99 0.29 1.16 16 25 C -0.17 -3.25 9.62 30.59 0.29 -2.96 16 26 C -0.18 -3.35 9.86 30.59 0.30 -3.04 16 27 H 0.09 3.08 8.14 -2.39 -0.02 3.06 16 28 H 0.10 2.94 8.14 -2.39 -0.02 2.92 16 29 H 0.09 3.15 5.32 -2.39 -0.01 3.13 16 30 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 32 H 0.34 11.11 8.78 -89.70 -0.79 10.32 16 33 H 0.04 1.72 8.13 -2.38 -0.02 1.70 16 34 H 0.02 0.81 8.07 -2.39 -0.02 0.79 16 35 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 36 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 38 H 0.06 2.94 7.90 -2.39 -0.02 2.92 16 39 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 40 H 0.21 2.41 8.06 -2.91 -0.02 2.39 16 41 H 0.16 2.00 7.42 -2.39 -0.02 1.99 16 42 H 0.11 2.67 5.35 -2.42 -0.01 2.66 16 43 H 0.13 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.13 1.65 8.14 -2.38 -0.02 1.63 16 45 H 0.07 1.84 7.49 -2.39 -0.02 1.82 16 Total: -1.00 -67.98 384.52 1.22 -66.76 By element: Atomic # 1 Polarization: 26.90 SS G_CDS: 0.22 Total: 27.13 kcal Atomic # 6 Polarization: -19.90 SS G_CDS: 6.57 Total: -13.33 kcal Atomic # 7 Polarization: -105.58 SS G_CDS: -6.30 Total: -111.88 kcal Atomic # 8 Polarization: -18.29 SS G_CDS: -0.04 Total: -18.33 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.26 Total: 2.19 kcal Total: -67.98 1.22 -66.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430075788.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.262 kcal (2) G-P(sol) polarization free energy of solvation -67.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds