Wall clock time and date at job start Tue Mar 31 2020 19:02:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35993 * 117.00244 * 2 1 4 4 C 1.38665 * 120.04294 * 0.02562 * 3 2 1 5 5 C 1.38231 * 120.08736 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.91332 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47068 * 89.99716 * 6 5 4 8 8 O 1.21282 * 120.00068 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99716 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99792 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46641 * 178.28091 * 10 9 7 12 12 C 1.50699 * 115.55409 * 65.14713 * 11 10 9 13 13 H 1.08001 * 120.00090 * 265.40384 * 12 11 10 14 14 C 1.37878 * 120.00317 * 85.39431 * 12 11 10 15 15 N 1.31518 * 119.99971 * 353.56306 * 14 12 11 16 16 Si 1.86799 * 120.00251 * 173.55572 * 14 12 11 17 17 H 1.48504 * 109.46912 * 90.00313 * 16 14 12 18 18 H 1.48490 * 109.47387 * 210.00266 * 16 14 12 19 19 H 1.48496 * 109.47168 * 330.00594 * 16 14 12 20 20 C 1.53002 * 117.50247 * 279.46722 * 11 10 9 21 21 C 1.53000 * 117.49688 * 210.80823 * 11 10 9 22 22 C 1.38227 * 120.17861 * 0.02562 * 5 4 3 23 23 C 1.38666 * 120.09428 * 359.95908 * 22 5 4 24 24 O 1.35993 * 120.04983 * 180.02562 * 23 22 5 25 25 C 1.42898 * 117.00165 * 359.97438 * 24 23 22 26 26 C 1.38982 * 120.04459 * 179.97438 * 3 2 1 27 27 O 1.36093 * 120.08699 * 359.97438 * 26 3 2 28 28 H 1.08997 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46685 * 299.99937 * 1 2 3 30 30 H 1.08997 * 109.46636 * 59.99538 * 1 2 3 31 31 H 1.07996 * 119.95871 * 0.24609 * 4 3 2 32 32 H 1.08997 * 109.47144 * 210.00036 * 6 5 4 33 33 H 1.09007 * 109.46593 * 330.00140 * 6 5 4 34 34 H 0.96998 * 120.00441 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.47006 * 298.27818 * 10 9 7 36 36 H 1.08992 * 109.46923 * 58.28659 * 10 9 7 37 37 H 0.96996 * 120.00093 * 185.07096 * 15 14 12 38 38 H 1.08999 * 117.49508 * 0.02562 * 20 11 10 39 39 H 1.08999 * 117.49751 * 145.02125 * 20 11 10 40 40 H 1.08996 * 117.50527 * 214.98199 * 21 11 10 41 41 H 1.09005 * 117.49874 * 359.97438 * 21 11 10 42 42 H 1.08001 * 119.95636 * 179.97438 * 22 5 4 43 43 H 1.09000 * 109.47005 * 59.99737 * 25 24 23 44 44 H 1.08998 * 109.47441 * 180.02562 * 25 24 23 45 45 H 1.09003 * 109.47144 * 300.00425 * 25 24 23 46 46 H 0.96697 * 114.00380 * 269.99481 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2922 2.3752 0.0005 5 6 1.9189 3.6073 0.0011 6 6 1.0953 4.8694 0.0022 7 6 0.8213 5.2891 1.4234 8 8 1.2527 4.6287 2.3447 9 7 0.0967 6.3983 1.6707 10 6 -0.1701 6.8060 3.0523 11 6 -0.9702 8.1102 3.0536 12 6 -2.3568 8.0227 2.4700 13 1 -2.5231 8.2743 1.4330 14 6 -3.4132 7.6213 3.2599 15 7 -3.1937 7.1940 4.4842 16 14 -5.1563 7.6846 2.5913 17 1 -5.4811 6.3937 1.9330 18 1 -6.1062 7.9239 3.7073 19 1 -5.2673 8.7864 1.6020 20 6 -0.1968 9.4137 2.8448 21 6 -0.7568 9.0686 4.2269 22 6 3.2990 3.6850 0.0005 23 6 4.0606 2.5262 0.0003 24 8 5.4183 2.6037 0.0003 25 6 5.9935 3.9118 0.0000 26 6 3.4344 1.2854 0.0005 27 8 4.1782 0.1457 0.0016 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8899 31 1 0.2137 2.3188 0.0050 32 1 1.6418 5.6603 -0.5113 33 1 0.1511 4.6875 -0.5113 34 1 -0.2487 6.9263 0.9339 35 1 -0.7430 6.0278 3.5566 36 1 0.7741 6.9586 3.5749 37 1 -3.9263 6.8427 5.0140 38 1 0.8820 9.3421 2.7061 39 1 -0.6910 10.2081 2.2855 40 1 -1.6192 9.6362 4.5765 41 1 -0.0468 8.7699 4.9982 42 1 3.7848 4.6495 0.0005 43 1 5.6693 4.4514 0.8898 44 1 7.0805 3.8307 -0.0004 45 1 5.6693 4.4510 -0.8901 46 1 4.3928 -0.1831 0.8852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000435958930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:40 Heat of formation + Delta-G solvation = -105.663454 kcal Electronic energy + Delta-G solvation = -28810.659821 eV Core-core repulsion = 24667.331425 eV Total energy + Delta-G solvation = -4143.328396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.85235 -39.16640 -39.08019 -37.16421 -36.94479 -36.25100 -33.32766 -32.04296 -31.71773 -29.72100 -28.38295 -27.95723 -26.66137 -25.77140 -24.88018 -22.06825 -22.01423 -21.24607 -19.85695 -19.39288 -18.75511 -17.69575 -17.19928 -16.76657 -16.59138 -16.24345 -16.04914 -15.61766 -15.25574 -15.07838 -14.90292 -14.64788 -14.61712 -13.94369 -13.82456 -13.65348 -13.23919 -12.78205 -12.67544 -12.62527 -12.31338 -12.00793 -11.81106 -11.67016 -11.64178 -11.44105 -11.17821 -11.05759 -10.99146 -10.68089 -10.66109 -10.58225 -10.33062 -9.72970 -9.38104 -9.02929 -8.56066 -8.36370 -8.22167 -8.20865 -8.12746 -6.13966 -4.23092 1.13672 1.32469 2.72536 3.13340 3.20163 3.28936 3.30389 3.39751 3.52813 3.95823 4.17139 4.29598 4.54564 4.80374 4.94868 4.97857 5.01392 5.05565 5.08282 5.12540 5.13748 5.19939 5.32939 5.38786 5.42373 5.44703 5.49372 5.65023 5.92704 5.98573 6.07652 6.27182 6.29747 6.40630 6.45848 6.50583 6.63098 6.82440 7.03573 7.07752 7.14997 7.21789 7.37024 7.42450 7.74992 7.75971 8.22681 8.27397 8.77202 8.82169 9.44069 10.93754 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.002860 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.621054 B = 9788.039821 C =11246.141581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.143 3.857 4 C -0.214 4.214 5 C 0.017 3.983 6 C -0.108 4.108 7 C 0.505 3.495 8 O -0.548 6.548 9 N -0.703 5.703 10 C 0.164 3.836 11 C 0.028 3.972 12 C -0.502 4.502 13 H 0.060 0.940 14 C 0.074 3.926 15 N -0.874 5.874 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.210 4.210 21 C -0.148 4.148 22 C -0.215 4.215 23 C 0.141 3.859 24 O -0.306 6.306 25 C 0.025 3.975 26 C 0.033 3.967 27 O -0.476 6.476 28 H 0.101 0.899 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.134 0.866 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.400 0.600 35 H 0.072 0.928 36 H 0.036 0.964 37 H 0.262 0.738 38 H 0.065 0.935 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.133 0.867 43 H 0.058 0.942 44 H 0.100 0.900 45 H 0.056 0.944 46 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.604 -7.949 -10.360 17.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.096 3.904 4 C -0.233 4.233 5 C 0.016 3.984 6 C -0.148 4.148 7 C 0.290 3.710 8 O -0.426 6.426 9 N -0.352 5.352 10 C 0.041 3.959 11 C 0.027 3.973 12 C -0.540 4.540 13 H 0.078 0.922 14 C -0.130 4.130 15 N -0.509 5.509 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.248 4.248 21 C -0.186 4.186 22 C -0.234 4.234 23 C 0.095 3.905 24 O -0.219 6.219 25 C -0.070 4.070 26 C -0.013 4.013 27 O -0.283 6.283 28 H 0.119 0.881 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.150 0.850 43 H 0.077 0.923 44 H 0.118 0.882 45 H 0.075 0.925 46 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 11.982 -8.711 -10.088 17.923 hybrid contribution -1.519 0.696 0.051 1.672 sum 10.463 -8.015 -10.037 16.567 Atomic orbital electron populations 1.23138 0.78026 1.04021 1.01887 1.86103 1.21511 1.25943 1.88345 1.18885 0.90651 0.84875 0.95958 1.20909 1.00259 0.91034 1.11120 1.18862 0.92535 0.93440 0.93576 1.20759 1.01531 0.96031 0.96509 1.20244 0.79201 0.81262 0.90296 1.90695 1.52136 1.53650 1.46165 1.45980 1.52541 1.26031 1.10643 1.20991 0.96568 0.98141 0.80221 1.19030 0.94077 0.85243 0.98924 1.20334 0.89743 1.47476 0.96411 0.92180 1.24991 0.98855 0.94622 0.94551 1.69974 1.32254 1.39814 1.08904 0.86634 0.84557 0.78449 0.78636 1.20668 1.21140 1.19789 1.23022 0.97249 1.02603 1.01903 1.22493 1.01030 1.05062 0.90047 1.20860 0.93848 0.97243 1.11497 1.18870 0.82802 0.92663 0.96164 1.86106 1.16707 1.30675 1.88421 1.23116 0.99070 0.83073 1.01732 1.16624 0.86142 0.84506 1.14050 1.84933 1.71658 1.38903 1.32846 0.88109 0.92149 0.92426 0.84815 0.87929 0.87712 0.76572 0.90998 0.94538 0.92804 0.91683 0.90337 0.89811 0.91691 0.84962 0.92290 0.88157 0.92496 0.76676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 101.05 0.99 1.22 16 2 O -0.31 -4.06 10.28 -34.30 -0.35 -4.41 16 3 C 0.14 2.04 6.70 -39.15 -0.26 1.77 16 4 C -0.21 -2.95 8.69 -39.43 -0.34 -3.29 16 5 C 0.02 0.23 4.37 -104.63 -0.46 -0.23 16 6 C -0.11 -1.35 5.83 -29.03 -0.17 -1.52 16 7 C 0.51 8.77 7.82 -10.99 -0.09 8.68 16 8 O -0.55 -11.73 16.03 5.56 0.09 -11.65 16 9 N -0.70 -12.73 5.48 -60.29 -0.33 -13.06 16 10 C 0.16 3.58 5.50 -4.04 -0.02 3.56 16 11 C 0.03 0.63 1.38 -155.66 -0.21 0.42 16 12 C -0.50 -12.46 8.63 -34.44 -0.30 -12.75 16 13 H 0.06 1.46 7.82 -52.49 -0.41 1.04 16 14 C 0.07 1.91 5.39 -17.82 -0.10 1.82 16 15 N -0.87 -23.70 12.91 55.43 0.72 -22.99 16 16 Si 0.89 19.96 29.55 -169.99 -5.02 14.94 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 H -0.29 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 20 C -0.21 -4.20 9.96 -26.69 -0.27 -4.47 16 21 C -0.15 -3.29 9.42 -26.69 -0.25 -3.54 16 22 C -0.22 -2.86 8.69 -39.43 -0.34 -3.20 16 23 C 0.14 1.97 6.70 -39.15 -0.26 1.71 16 24 O -0.31 -3.90 10.28 -34.30 -0.35 -4.25 16 25 C 0.03 0.22 9.81 101.05 0.99 1.21 16 26 C 0.03 0.48 6.73 -39.03 -0.26 0.22 16 27 O -0.48 -6.49 13.07 -45.29 -0.59 -7.08 16 28 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 30 H 0.06 0.48 7.67 -51.93 -0.40 0.08 16 31 H 0.13 1.64 6.29 -52.49 -0.33 1.31 16 32 H 0.10 1.00 8.08 -51.93 -0.42 0.58 16 33 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 34 H 0.40 6.47 8.36 -40.82 -0.34 6.12 16 35 H 0.07 1.83 8.14 -51.93 -0.42 1.41 16 36 H 0.04 0.80 8.09 -51.93 -0.42 0.37 16 37 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 40 H 0.08 1.99 8.14 -51.93 -0.42 1.56 16 41 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 42 H 0.13 1.49 6.29 -52.49 -0.33 1.16 16 43 H 0.06 0.50 7.66 -51.93 -0.40 0.11 16 44 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.42 7.66 -51.93 -0.40 0.02 16 46 H 0.38 3.64 9.07 45.56 0.41 4.05 16 LS Contribution 392.38 15.07 5.91 5.91 Total: -1.00 -32.78 392.38 -7.23 -40.00 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -5.95 Total: 10.97 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: -1.35 Total: -8.40 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.39 Total: -36.04 kcal Atomic # 8 Polarization: -26.18 SS G_CDS: -1.21 Total: -27.39 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.78 -7.23 -40.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435958930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.659 kcal (2) G-P(sol) polarization free energy of solvation -32.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds