Wall clock time and date at job start Tue Mar 31 2020 19:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35993 * 117.00244 * 2 1 4 4 C 1.38665 * 120.04294 * 0.02562 * 3 2 1 5 5 C 1.38231 * 120.08736 * 179.97438 * 4 3 2 6 6 C 1.50700 * 119.91332 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.47068 * 89.99716 * 6 5 4 8 8 O 1.21282 * 120.00068 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99716 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99792 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.46641 * 178.28091 * 10 9 7 12 12 C 1.50699 * 115.55409 * 65.14713 * 11 10 9 13 13 H 1.08001 * 120.00090 * 265.40384 * 12 11 10 14 14 C 1.37878 * 120.00317 * 85.39431 * 12 11 10 15 15 N 1.31518 * 119.99971 * 353.56306 * 14 12 11 16 16 Si 1.86799 * 120.00251 * 173.55572 * 14 12 11 17 17 H 1.48504 * 109.46912 * 90.00313 * 16 14 12 18 18 H 1.48490 * 109.47387 * 210.00266 * 16 14 12 19 19 H 1.48496 * 109.47168 * 330.00594 * 16 14 12 20 20 C 1.53002 * 117.50247 * 279.46722 * 11 10 9 21 21 C 1.53000 * 117.49688 * 210.80823 * 11 10 9 22 22 C 1.38227 * 120.17861 * 0.02562 * 5 4 3 23 23 C 1.38666 * 120.09428 * 359.95908 * 22 5 4 24 24 O 1.35993 * 120.04983 * 180.02562 * 23 22 5 25 25 C 1.42898 * 117.00165 * 359.97438 * 24 23 22 26 26 C 1.38982 * 120.04459 * 179.97438 * 3 2 1 27 27 O 1.36093 * 120.08699 * 359.97438 * 26 3 2 28 28 H 1.08997 * 109.47093 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46685 * 299.99937 * 1 2 3 30 30 H 1.08997 * 109.46636 * 59.99538 * 1 2 3 31 31 H 1.07996 * 119.95871 * 0.24609 * 4 3 2 32 32 H 1.08997 * 109.47144 * 210.00036 * 6 5 4 33 33 H 1.09007 * 109.46593 * 330.00140 * 6 5 4 34 34 H 0.96998 * 120.00441 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.47006 * 298.27818 * 10 9 7 36 36 H 1.08992 * 109.46923 * 58.28659 * 10 9 7 37 37 H 0.96996 * 120.00093 * 185.07096 * 15 14 12 38 38 H 1.08999 * 117.49508 * 0.02562 * 20 11 10 39 39 H 1.08999 * 117.49751 * 145.02125 * 20 11 10 40 40 H 1.08996 * 117.50527 * 214.98199 * 21 11 10 41 41 H 1.09005 * 117.49874 * 359.97438 * 21 11 10 42 42 H 1.08001 * 119.95636 * 179.97438 * 22 5 4 43 43 H 1.09000 * 109.47005 * 59.99737 * 25 24 23 44 44 H 1.08998 * 109.47441 * 180.02562 * 25 24 23 45 45 H 1.09003 * 109.47144 * 300.00425 * 25 24 23 46 46 H 0.96697 * 114.00380 * 269.99481 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2922 2.3752 0.0005 5 6 1.9189 3.6073 0.0011 6 6 1.0953 4.8694 0.0022 7 6 0.8213 5.2891 1.4234 8 8 1.2527 4.6287 2.3447 9 7 0.0967 6.3983 1.6707 10 6 -0.1701 6.8060 3.0523 11 6 -0.9702 8.1102 3.0536 12 6 -2.3568 8.0227 2.4700 13 1 -2.5231 8.2743 1.4330 14 6 -3.4132 7.6213 3.2599 15 7 -3.1937 7.1940 4.4842 16 14 -5.1563 7.6846 2.5913 17 1 -5.4811 6.3937 1.9330 18 1 -6.1062 7.9239 3.7073 19 1 -5.2673 8.7864 1.6020 20 6 -0.1968 9.4137 2.8448 21 6 -0.7568 9.0686 4.2269 22 6 3.2990 3.6850 0.0005 23 6 4.0606 2.5262 0.0003 24 8 5.4183 2.6037 0.0003 25 6 5.9935 3.9118 0.0000 26 6 3.4344 1.2854 0.0005 27 8 4.1782 0.1457 0.0016 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8899 31 1 0.2137 2.3188 0.0050 32 1 1.6418 5.6603 -0.5113 33 1 0.1511 4.6875 -0.5113 34 1 -0.2487 6.9263 0.9339 35 1 -0.7430 6.0278 3.5566 36 1 0.7741 6.9586 3.5749 37 1 -3.9263 6.8427 5.0140 38 1 0.8820 9.3421 2.7061 39 1 -0.6910 10.2081 2.2855 40 1 -1.6192 9.6362 4.5765 41 1 -0.0468 8.7699 4.9982 42 1 3.7848 4.6495 0.0005 43 1 5.6693 4.4514 0.8898 44 1 7.0805 3.8307 -0.0004 45 1 5.6693 4.4510 -0.8901 46 1 4.3928 -0.1831 0.8852 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000435958930.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:39 Heat of formation + Delta-G solvation = -128.240065 kcal Electronic energy + Delta-G solvation = -28811.638817 eV Core-core repulsion = 24667.331425 eV Total energy + Delta-G solvation = -4144.307392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.83960 -40.57168 -39.99284 -38.54204 -38.13387 -37.39810 -34.89522 -33.95861 -32.78143 -30.67936 -29.45338 -28.74543 -27.98644 -27.30833 -26.32605 -23.14903 -23.00728 -22.88479 -21.35127 -21.02434 -19.79712 -18.71716 -18.27048 -18.16210 -17.70083 -17.50990 -17.13918 -16.69738 -16.53957 -16.45832 -16.16048 -16.14082 -15.62770 -15.46784 -14.86523 -14.72007 -14.69402 -14.26765 -13.90516 -13.61081 -13.46241 -13.37483 -13.20953 -12.91275 -12.83679 -12.63984 -12.51765 -12.43479 -12.33821 -12.08371 -12.02955 -11.66968 -11.61593 -11.48267 -10.88658 -10.82614 -10.44744 -10.04081 -9.79351 -9.22757 -9.20098 -8.08841 -6.22028 0.10634 0.32034 1.42768 1.46631 1.54246 1.78067 1.86328 2.26438 2.43350 2.67860 2.70078 3.19894 3.20176 3.51459 3.55288 3.91813 4.00098 4.09244 4.19054 4.26872 4.30793 4.33225 4.34734 4.38907 4.54209 4.55710 4.58646 4.66749 4.68083 4.71009 4.74877 4.75261 4.93871 5.01123 5.08126 5.08359 5.28468 5.36768 5.45187 5.59987 5.62459 5.70870 5.79706 6.18279 6.24732 6.37924 6.81129 6.84488 6.87202 7.44367 7.48103 8.98601 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013820 B = 0.002860 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.621054 B = 9788.039821 C =11246.141581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.321 6.321 3 C 0.131 3.869 4 C -0.223 4.223 5 C 0.004 3.996 6 C -0.096 4.096 7 C 0.505 3.495 8 O -0.593 6.593 9 N -0.698 5.698 10 C 0.180 3.820 11 C 0.008 3.992 12 C -0.503 4.503 13 H 0.067 0.933 14 C 0.025 3.975 15 N -0.909 5.909 16 Si 0.948 3.052 17 H -0.278 1.278 18 H -0.293 1.293 19 H -0.263 1.263 20 C -0.174 4.174 21 C -0.164 4.164 22 C -0.218 4.218 23 C 0.133 3.867 24 O -0.322 6.322 25 C 0.016 3.984 26 C 0.013 3.987 27 O -0.487 6.487 28 H 0.124 0.876 29 H 0.054 0.946 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.139 0.861 33 H 0.130 0.870 34 H 0.412 0.588 35 H 0.026 0.974 36 H 0.033 0.967 37 H 0.258 0.742 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.068 0.932 42 H 0.152 0.848 43 H 0.058 0.942 44 H 0.124 0.876 45 H 0.071 0.929 46 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.987 -6.990 -12.604 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.235 6.235 3 C 0.085 3.915 4 C -0.242 4.242 5 C 0.003 3.997 6 C -0.135 4.135 7 C 0.293 3.707 8 O -0.474 6.474 9 N -0.348 5.348 10 C 0.056 3.944 11 C 0.007 3.993 12 C -0.541 4.541 13 H 0.085 0.915 14 C -0.176 4.176 15 N -0.547 5.547 16 Si 0.775 3.225 17 H -0.204 1.204 18 H -0.219 1.219 19 H -0.187 1.187 20 C -0.211 4.211 21 C -0.202 4.202 22 C -0.237 4.237 23 C 0.087 3.913 24 O -0.235 6.235 25 C -0.078 4.078 26 C -0.033 4.033 27 O -0.297 6.297 28 H 0.143 0.857 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.162 0.838 32 H 0.157 0.843 33 H 0.148 0.852 34 H 0.249 0.751 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.080 0.920 41 H 0.086 0.914 42 H 0.170 0.830 43 H 0.077 0.923 44 H 0.142 0.858 45 H 0.089 0.911 46 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 12.367 -7.733 -12.372 19.126 hybrid contribution -1.565 0.370 0.770 1.783 sum 10.801 -7.363 -11.602 17.478 Atomic orbital electron populations 1.23388 0.76322 1.05770 1.02199 1.86081 1.23329 1.25777 1.88299 1.19050 0.90862 0.85425 0.96207 1.21114 1.00866 0.91127 1.11112 1.19079 0.92982 0.93832 0.93829 1.20770 1.03173 0.96461 0.93068 1.21067 0.77667 0.80020 0.91993 1.90682 1.53703 1.54789 1.48215 1.45845 1.52843 1.26720 1.09370 1.20508 0.95408 0.96416 0.82073 1.19054 0.94106 0.86477 0.99684 1.20685 0.90739 1.46069 0.96625 0.91498 1.25704 1.02346 0.94732 0.94826 1.70109 1.32886 1.41442 1.10223 0.85702 0.80361 0.78613 0.77846 1.20395 1.21934 1.18718 1.23009 0.98388 1.00486 0.99231 1.22433 1.00897 1.05631 0.91253 1.21108 0.93834 0.97899 1.10831 1.19012 0.83526 0.92717 0.96082 1.86089 1.16111 1.33042 1.88261 1.23416 1.00308 0.81675 1.02386 1.16934 0.86629 0.85061 1.14724 1.84869 1.71651 1.38916 1.34280 0.85745 0.92694 0.91173 0.83837 0.84264 0.85226 0.75137 0.95537 0.94872 0.93319 0.89178 0.89501 0.91974 0.91368 0.83018 0.92305 0.85825 0.91051 0.75074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.32 -8.46 10.28 -79.53 -0.82 -9.28 16 3 C 0.13 3.72 6.70 22.55 0.15 3.87 16 4 C -0.22 -5.95 8.69 22.37 0.19 -5.75 16 5 C 0.00 0.09 4.37 -19.87 -0.09 0.01 16 6 C -0.10 -2.10 5.83 29.10 0.17 -1.93 16 7 C 0.51 16.75 7.82 87.66 0.69 17.44 16 8 O -0.59 -25.31 16.03 -3.04 -0.05 -25.35 16 9 N -0.70 -24.17 5.48 -463.06 -2.54 -26.71 16 10 C 0.18 7.89 5.50 86.38 0.48 8.36 16 11 C 0.01 0.33 1.38 -52.93 -0.07 0.26 16 12 C -0.50 -24.52 8.63 25.60 0.22 -24.30 16 13 H 0.07 3.10 7.82 -2.91 -0.02 3.08 16 14 C 0.02 1.26 5.39 84.65 0.46 1.72 16 15 N -0.91 -50.36 12.91 21.45 0.28 -50.08 16 16 Si 0.95 40.75 29.55 68.60 2.03 42.78 16 17 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 20 C -0.17 -6.52 9.96 30.62 0.30 -6.22 16 21 C -0.16 -7.24 9.42 30.62 0.29 -6.96 16 22 C -0.22 -5.42 8.69 22.37 0.19 -5.23 16 23 C 0.13 3.62 6.70 22.55 0.15 3.77 16 24 O -0.32 -7.88 10.28 -79.53 -0.82 -8.70 16 25 C 0.02 0.25 9.81 113.37 1.11 1.36 16 26 C 0.01 0.37 6.73 22.63 0.15 0.52 16 27 O -0.49 -13.39 13.07 -70.46 -0.92 -14.31 16 28 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.05 1.05 7.66 -2.39 -0.02 1.03 16 30 H 0.07 1.09 7.67 -2.39 -0.02 1.07 16 31 H 0.14 3.37 6.29 -2.91 -0.02 3.35 16 32 H 0.14 2.07 8.08 -2.39 -0.02 2.05 16 33 H 0.13 2.25 8.08 -2.38 -0.02 2.23 16 34 H 0.41 12.22 8.36 -92.71 -0.78 11.44 16 35 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 36 H 0.03 1.45 8.09 -2.39 -0.02 1.43 16 37 H 0.26 13.86 8.32 -92.71 -0.77 13.09 16 38 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 41 H 0.07 2.91 8.14 -2.38 -0.02 2.89 16 42 H 0.15 3.02 6.29 -2.91 -0.02 3.00 16 43 H 0.06 0.90 7.66 -2.39 -0.02 0.89 16 44 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.07 0.88 7.66 -2.39 -0.02 0.87 16 46 H 0.39 7.70 9.07 -74.06 -0.67 7.03 16 Total: -1.00 -72.10 392.38 2.25 -69.85 By element: Atomic # 1 Polarization: 33.86 SS G_CDS: -0.42 Total: 33.43 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 5.51 Total: -11.64 kcal Atomic # 7 Polarization: -74.53 SS G_CDS: -2.26 Total: -76.79 kcal Atomic # 8 Polarization: -55.04 SS G_CDS: -2.60 Total: -57.64 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -72.10 2.25 -69.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000435958930.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.389 kcal (2) G-P(sol) polarization free energy of solvation -72.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds