Wall clock time and date at job start Tue Mar 31 2020 19:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99792 * 2 1 4 4 C 1.52997 * 109.46766 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.47435 * 66.22473 * 4 3 2 6 6 C 1.37096 * 120.00046 * 264.14672 * 5 4 3 7 7 H 1.08000 * 120.00331 * 138.83133 * 6 5 4 8 8 C 1.38947 * 119.99935 * 318.83096 * 6 5 4 9 9 N 1.31416 * 120.00300 * 160.98102 * 8 6 5 10 10 Si 1.86803 * 119.99998 * 340.97930 * 8 6 5 11 11 H 1.48509 * 109.46858 * 91.75434 * 10 8 6 12 12 H 1.48496 * 109.47390 * 211.75227 * 10 8 6 13 13 H 1.48496 * 109.47349 * 331.75700 * 10 8 6 14 14 C 1.34782 * 120.00332 * 84.14101 * 5 4 3 15 15 O 1.21295 * 119.99530 * 4.96139 * 14 5 4 16 16 C 1.50694 * 120.00255 * 184.96192 * 14 5 4 17 17 H 1.09002 * 109.72957 * 33.40149 * 16 14 5 18 18 C 1.53415 * 109.69749 * 272.82240 * 16 14 5 19 19 O 1.42824 * 108.40064 * 175.55652 * 18 16 14 20 20 C 1.36027 * 117.81107 * 49.17211 * 19 18 16 21 21 C 1.39129 * 118.40896 * 163.02780 * 20 19 18 22 22 C 1.37951 * 120.28791 * 179.56788 * 21 20 19 23 23 C 1.38718 * 119.89881 * 0.02562 * 22 21 20 24 24 O 1.35986 * 120.06399 * 180.02562 * 23 22 21 25 25 C 1.42899 * 117.00356 * 0.02868 * 24 23 22 26 26 C 1.38532 * 119.86480 * 0.08891 * 23 22 21 27 27 C 1.38348 * 121.79848 * 342.78343 * 20 19 18 28 28 C 1.50776 * 121.41191 * 0.52058 * 27 20 19 29 29 H 1.09002 * 109.47378 * 300.00240 * 1 2 3 30 30 H 1.09002 * 109.47145 * 60.00079 * 1 2 3 31 31 H 1.09006 * 109.47418 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47580 * 59.99688 * 3 2 1 33 33 H 1.08999 * 109.46423 * 299.99471 * 3 2 1 34 34 H 1.08998 * 109.47700 * 306.22518 * 4 3 2 35 35 H 1.08996 * 109.47110 * 186.22333 * 4 3 2 36 36 H 0.96997 * 119.99994 * 179.97438 * 9 8 6 37 37 H 1.09000 * 109.68611 * 295.29772 * 18 16 14 38 38 H 1.08999 * 109.67955 * 55.82056 * 18 16 14 39 39 H 1.07996 * 119.85649 * 359.58336 * 21 20 19 40 40 H 1.08002 * 120.04998 * 180.02562 * 22 21 20 41 41 H 1.09000 * 109.46992 * 300.00130 * 25 24 23 42 42 H 1.09002 * 109.46796 * 59.99626 * 25 24 23 43 43 H 1.08996 * 109.46995 * 179.97438 * 25 24 23 44 44 H 1.08001 * 119.85472 * 179.97438 * 26 23 22 45 45 H 1.09000 * 109.43338 * 222.06651 * 28 27 20 46 46 H 1.08999 * 109.43468 * 102.19772 * 28 27 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9788 0.5908 -1.2630 6 6 4.2158 -0.7573 -1.3410 7 1 3.8983 -1.3120 -2.2116 8 6 4.8644 -1.4100 -0.2999 9 7 4.7690 -2.7154 -0.1819 10 14 5.8721 -0.4320 0.9320 11 1 5.0144 -0.0534 2.0836 12 1 7.0074 -1.2604 1.4116 13 1 6.3956 0.7952 0.2801 14 6 4.1537 1.3696 -2.3490 15 8 4.0315 2.5730 -2.2583 16 6 4.5009 0.7454 -3.6760 17 1 4.0218 -0.2300 -3.7604 18 6 6.0225 0.5857 -3.7899 19 8 6.3137 -0.1008 -5.0080 20 6 5.7253 0.3517 -6.1479 21 6 6.2531 -0.0515 -7.3704 22 6 5.6813 0.3769 -8.5504 23 6 4.5755 1.2138 -8.5191 24 8 4.0089 1.6378 -9.6803 25 6 4.6037 1.1817 -10.8969 26 6 4.0505 1.6179 -7.3024 27 6 4.6245 1.1892 -6.1171 28 6 4.0266 1.6535 -4.8132 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6886 1.8465 0.8899 33 1 1.6885 1.8463 -0.8901 34 1 3.8494 0.5507 0.8299 35 1 3.9782 2.1744 0.1120 36 1 5.2221 -3.1710 0.5447 37 1 6.4950 1.5679 -3.7999 38 1 6.3952 0.0076 -2.9444 39 1 7.1141 -0.7030 -7.3956 40 1 6.0940 0.0612 -9.4972 41 1 5.6417 1.5119 -10.9399 42 1 4.5670 0.0930 -10.9334 43 1 4.0561 1.5921 -11.7452 44 1 3.1898 2.2699 -7.2782 45 1 2.9392 1.6148 -4.8787 46 1 4.3411 2.6781 -4.6144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457180588.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:23:19 Heat of formation + Delta-G solvation = -133.548155 kcal Electronic energy + Delta-G solvation = -29810.820103 eV Core-core repulsion = 25666.282535 eV Total energy + Delta-G solvation = -4144.537568 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.00594 -40.85412 -39.97763 -38.64696 -37.34767 -36.77190 -35.13471 -33.96031 -32.10481 -30.96992 -30.63828 -28.02052 -27.28655 -26.88278 -26.63664 -25.21432 -23.75843 -23.57770 -21.43569 -20.67376 -18.94317 -18.84448 -18.72199 -18.07513 -17.71080 -17.44924 -17.05228 -16.62587 -16.42596 -16.26350 -16.04919 -15.85239 -15.70201 -15.30758 -15.05907 -14.80298 -14.48266 -14.29701 -14.11301 -14.08537 -13.98770 -13.69670 -13.50343 -13.25933 -13.12963 -12.80056 -12.69417 -12.49365 -12.42806 -12.08794 -11.93362 -11.79609 -11.73575 -11.56563 -11.26602 -11.08152 -10.63521 -10.42412 -9.84219 -9.71580 -8.70192 -8.43170 -6.09051 0.22991 0.44980 1.20960 1.32735 1.42703 1.74503 2.21450 2.23951 2.45728 2.52299 2.71594 2.89203 3.08591 3.61183 3.72386 3.78751 3.87252 3.99300 4.04231 4.11618 4.16736 4.26103 4.33806 4.37131 4.45569 4.47094 4.50524 4.51555 4.54080 4.58690 4.63756 4.71497 4.76962 4.77157 4.82935 4.90748 4.95815 4.97339 5.07254 5.30752 5.43271 5.46225 5.56982 6.10515 6.23172 6.34006 6.36578 6.55388 6.98942 7.38135 7.70919 8.71088 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.015272 B = 0.003391 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.029576 B = 8255.880776 C = 9149.556009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.400 6.400 3 C 0.060 3.940 4 C 0.088 3.912 5 N -0.460 5.460 6 C -0.325 4.325 7 H 0.074 0.926 8 C 0.037 3.963 9 N -0.897 5.897 10 Si 0.919 3.081 11 H -0.260 1.260 12 H -0.285 1.285 13 H -0.260 1.260 14 C 0.490 3.510 15 O -0.607 6.607 16 C -0.119 4.119 17 H 0.090 0.910 18 C 0.089 3.911 19 O -0.320 6.320 20 C 0.071 3.929 21 C -0.112 4.112 22 C -0.168 4.168 23 C 0.091 3.909 24 O -0.334 6.334 25 C 0.017 3.983 26 C -0.128 4.128 27 C -0.121 4.121 28 C -0.056 4.056 29 H 0.057 0.943 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.043 0.957 34 H 0.072 0.928 35 H 0.092 0.908 36 H 0.277 0.723 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.149 0.851 40 H 0.166 0.834 41 H 0.066 0.934 42 H 0.064 0.936 43 H 0.118 0.882 44 H 0.139 0.861 45 H 0.084 0.916 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.821 6.890 -13.110 14.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.319 6.319 3 C -0.018 4.018 4 C -0.035 4.035 5 N -0.180 5.180 6 C -0.453 4.453 7 H 0.092 0.908 8 C -0.167 4.167 9 N -0.534 5.534 10 Si 0.745 3.255 11 H -0.186 1.186 12 H -0.212 1.212 13 H -0.184 1.184 14 C 0.280 3.720 15 O -0.493 6.493 16 C -0.141 4.141 17 H 0.108 0.892 18 C 0.013 3.987 19 O -0.235 6.235 20 C 0.026 3.974 21 C -0.130 4.130 22 C -0.186 4.186 23 C 0.046 3.954 24 O -0.249 6.249 25 C -0.077 4.077 26 C -0.146 4.146 27 C -0.122 4.122 28 C -0.093 4.093 29 H 0.075 0.925 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.125 0.875 39 H 0.167 0.833 40 H 0.183 0.817 41 H 0.085 0.915 42 H 0.083 0.917 43 H 0.136 0.864 44 H 0.157 0.843 45 H 0.102 0.898 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.770 7.083 -12.943 14.775 hybrid contribution 0.104 0.033 0.993 0.999 sum -0.665 7.116 -11.950 13.924 Atomic orbital electron populations 1.22868 0.80406 1.03180 1.00476 1.88125 1.20696 1.27744 1.95373 1.22810 0.93256 0.84981 1.00705 1.21949 0.94205 0.99304 0.88024 1.43708 1.58051 1.07531 1.08687 1.18676 1.37924 0.81457 1.07257 0.90821 1.25775 0.96632 0.95688 0.98606 1.69820 1.41216 1.09708 1.32637 0.86273 0.79275 0.79654 0.80329 1.18577 1.21150 1.18418 1.20342 0.79207 0.85916 0.86530 1.90520 1.57288 1.15052 1.86430 1.21567 0.98567 1.00902 0.93016 0.89223 1.22654 0.93159 0.97840 0.85004 1.86040 1.67224 1.55751 1.14476 1.19044 0.93623 0.97664 0.87068 1.20631 1.01438 1.02214 0.88749 1.21275 0.97159 1.00768 0.99394 1.18864 0.93914 0.96274 0.86320 1.86052 1.55651 1.69971 1.13203 1.23354 0.99932 1.00847 0.83586 1.20198 1.02288 1.03398 0.88732 1.19658 0.96301 1.00747 0.95497 1.20299 1.00858 0.99310 0.88826 0.92496 0.94022 0.89451 0.90379 0.93867 0.91014 0.88974 0.91321 0.91179 0.87473 0.83326 0.81693 0.91517 0.91702 0.86382 0.84307 0.89754 0.89355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -16.49 10.51 -148.98 -1.57 -18.05 16 3 C 0.06 2.24 6.23 71.98 0.45 2.69 16 4 C 0.09 3.73 4.34 86.38 0.37 4.10 16 5 N -0.46 -21.58 2.10 -635.56 -1.33 -22.91 16 6 C -0.33 -16.94 8.50 84.04 0.71 -16.22 16 7 H 0.07 4.22 6.69 -2.91 -0.02 4.20 16 8 C 0.04 1.96 5.30 84.92 0.45 2.41 16 9 N -0.90 -50.40 13.96 21.66 0.30 -50.09 16 10 Si 0.92 41.16 25.13 68.60 1.72 42.88 16 11 H -0.26 -11.01 6.58 99.48 0.65 -10.35 16 12 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 13 H -0.26 -11.48 7.11 99.48 0.71 -10.77 16 14 C 0.49 21.92 6.71 87.65 0.59 22.51 16 15 O -0.61 -28.16 15.52 -3.07 -0.05 -28.21 16 16 C -0.12 -4.78 2.06 -11.38 -0.02 -4.81 16 17 H 0.09 3.94 6.50 -2.39 -0.02 3.92 16 18 C 0.09 3.40 6.27 72.12 0.45 3.85 16 19 O -0.32 -11.89 10.28 -93.86 -0.96 -12.85 16 20 C 0.07 2.34 6.47 22.51 0.15 2.49 16 21 C -0.11 -2.99 9.93 22.42 0.22 -2.77 16 22 C -0.17 -3.75 9.03 22.32 0.20 -3.55 16 23 C 0.09 2.31 6.68 22.45 0.15 2.46 16 24 O -0.33 -7.41 10.50 -93.40 -0.98 -8.39 16 25 C 0.02 0.21 9.81 113.37 1.11 1.32 16 26 C -0.13 -3.64 9.60 22.40 0.22 -3.43 16 27 C -0.12 -3.93 5.75 -19.75 -0.11 -4.04 16 28 C -0.06 -1.94 4.95 29.89 0.15 -1.79 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.09 2.45 8.14 -2.38 -0.02 2.43 16 32 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 33 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.07 3.17 3.73 -2.39 -0.01 3.16 16 35 H 0.09 3.67 7.54 -2.39 -0.02 3.65 16 36 H 0.28 14.57 8.31 -92.71 -0.77 13.80 16 37 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 38 H 0.11 4.36 7.78 -2.39 -0.02 4.34 16 39 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 40 H 0.17 2.45 6.31 -2.91 -0.02 2.43 16 41 H 0.07 0.66 7.66 -2.39 -0.02 0.64 16 42 H 0.06 0.67 7.67 -2.39 -0.02 0.66 16 43 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 45 H 0.08 2.81 8.14 -2.39 -0.02 2.79 16 46 H 0.09 3.13 7.42 -2.39 -0.02 3.12 16 Total: -1.00 -65.79 372.28 4.41 -61.38 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: 0.94 Total: 28.95 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 6.33 Total: 7.29 kcal Atomic # 7 Polarization: -71.97 SS G_CDS: -1.03 Total: -73.00 kcal Atomic # 8 Polarization: -63.94 SS G_CDS: -3.56 Total: -67.50 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 1.72 Total: 42.88 kcal Total: -65.79 4.41 -61.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457180588.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.166 kcal (2) G-P(sol) polarization free energy of solvation -65.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds