Wall clock time and date at job start Tue Mar 31 2020 19:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50698 * 120.00028 * 2 1 4 4 O 1.42903 * 109.47070 * 135.00594 * 3 2 1 5 5 C 1.35800 * 116.99621 * 180.02562 * 4 3 2 6 6 C 1.38848 * 119.92749 * 0.02562 * 5 4 3 7 7 C 1.37779 * 120.15733 * 180.02562 * 6 5 4 8 8 C 1.39773 * 119.99166 * 0.02562 * 7 6 5 9 9 C 1.47507 * 120.07203 * 179.97438 * 8 7 6 10 10 O 1.21615 * 120.00107 * 143.97732 * 9 8 7 11 11 N 1.34778 * 119.99673 * 323.97896 * 9 8 7 12 12 C 1.36897 * 120.00239 * 4.67111 * 11 9 8 13 13 H 1.07998 * 120.00162 * 317.00947 * 12 11 9 14 14 C 1.39020 * 120.00219 * 137.00667 * 12 11 9 15 15 N 1.31391 * 120.00060 * 343.48432 * 14 12 11 16 16 Si 1.86793 * 120.00367 * 163.48005 * 14 12 11 17 17 H 1.48503 * 109.47141 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47484 * 120.00159 * 16 14 12 19 19 H 1.48498 * 109.47293 * 240.00101 * 16 14 12 20 20 C 1.46504 * 119.99624 * 184.66829 * 11 9 8 21 21 C 1.53001 * 109.46841 * 84.89690 * 20 11 9 22 22 O 1.42898 * 109.46910 * 65.00203 * 21 20 11 23 23 C 1.42910 * 113.99708 * 179.97438 * 22 21 20 24 24 C 1.39784 * 119.85277 * 359.72706 * 8 7 6 25 25 C 1.38126 * 119.84506 * 0.52899 * 24 8 7 26 26 O 1.35999 * 120.00240 * 179.77317 * 25 24 8 27 27 C 1.42903 * 116.99892 * 359.71814 * 26 25 24 28 28 H 1.07999 * 120.00305 * 359.97438 * 1 2 3 29 29 H 1.08006 * 119.99888 * 180.02562 * 1 2 3 30 30 H 1.08009 * 120.00302 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47259 * 15.00495 * 3 2 1 32 32 H 1.09004 * 109.47515 * 255.00531 * 3 2 1 33 33 H 1.07995 * 119.91901 * 0.02562 * 6 5 4 34 34 H 1.07989 * 120.00107 * 180.02562 * 7 6 5 35 35 H 0.96991 * 120.00047 * 180.02562 * 15 14 12 36 36 H 1.08998 * 109.47112 * 204.89599 * 20 11 9 37 37 H 1.09000 * 109.47006 * 324.89712 * 20 11 9 38 38 H 1.09001 * 109.46864 * 184.99669 * 21 20 11 39 39 H 1.08995 * 109.47326 * 304.99466 * 21 20 11 40 40 H 1.08994 * 109.47081 * 59.99850 * 23 22 21 41 41 H 1.09003 * 109.46773 * 179.97438 * 23 22 21 42 42 H 1.09001 * 109.46624 * 299.99733 * 23 22 21 43 43 H 1.08002 * 120.08256 * 180.27668 * 24 8 7 44 44 H 1.09004 * 109.46938 * 180.02562 * 27 26 25 45 45 H 1.09000 * 109.46487 * 60.00324 * 27 26 25 46 46 H 1.09002 * 109.47185 * 300.00219 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1268 1.2412 0.9526 5 6 3.9085 2.3444 1.0787 6 6 3.6550 3.4658 0.3001 7 6 4.4454 4.5875 0.4239 8 6 5.5058 4.5980 1.3345 9 6 6.3535 5.7977 1.4680 10 8 6.7875 6.1174 2.5581 11 7 6.6471 6.5396 0.3817 12 6 6.0821 6.2360 -0.8277 13 1 6.0138 5.2072 -1.1488 14 6 5.5961 7.2522 -1.6425 15 7 5.3765 8.4471 -1.1423 16 14 5.2554 6.9188 -3.4486 17 1 5.5823 5.5043 -3.7612 18 1 3.8203 7.1699 -3.7363 19 1 6.0922 7.8170 -4.2842 20 6 7.5710 7.6710 0.4953 21 6 9.0103 7.1692 0.3632 22 8 9.2135 6.6457 -0.9508 23 6 10.5334 6.1483 -1.1805 24 6 5.7579 3.4710 2.1220 25 6 4.9647 2.3480 1.9890 26 8 5.2099 1.2481 2.7503 27 6 6.3077 1.3219 3.6622 28 1 -0.5400 0.9353 0.0004 29 1 -0.5400 -0.9354 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3855 2.1161 0.2661 32 1 2.4754 1.4869 -0.9927 33 1 2.8362 3.4587 -0.4041 34 1 4.2457 5.4583 -0.1826 35 1 5.0370 9.1559 -1.7107 36 1 7.3630 8.3907 -0.2963 37 1 7.4408 8.1502 1.4656 38 1 9.7003 7.9952 0.5359 39 1 9.1908 6.3853 1.0987 40 1 10.7458 5.3433 -0.4771 41 1 10.6062 5.7685 -2.1997 42 1 11.2546 6.9534 -1.0400 43 1 6.5734 3.4767 2.8300 44 1 6.3928 0.3806 4.2052 45 1 6.1394 2.1352 4.3681 46 1 7.2283 1.5061 3.1084 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457181344.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:21 Heat of formation + Delta-G solvation = -88.613120 kcal Electronic energy + Delta-G solvation = -29640.003862 eV Core-core repulsion = 25497.414823 eV Total energy + Delta-G solvation = -4142.589038 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.24910 -38.79659 -38.27963 -37.08264 -35.97483 -34.78235 -34.07132 -31.66007 -30.25929 -29.87253 -28.83575 -26.90725 -26.53272 -25.79239 -24.90054 -22.96848 -21.90209 -21.41631 -19.97170 -19.35491 -18.32600 -17.52475 -16.70857 -16.31718 -15.95734 -15.84096 -15.46584 -15.30653 -15.17031 -14.80996 -14.44257 -14.36538 -14.15962 -14.09962 -13.65081 -13.44652 -13.20606 -12.86121 -12.45002 -12.23516 -12.09843 -11.92816 -11.62564 -11.42275 -11.20683 -11.14904 -11.07313 -11.03142 -11.01516 -10.77765 -10.58656 -10.46401 -10.35770 -10.05603 -9.61782 -9.16700 -9.00610 -8.55533 -8.25725 -7.48408 -7.32668 -6.38890 -4.07920 1.60592 1.91794 1.95370 3.12405 3.23524 3.27787 3.50908 3.57570 3.76686 4.10338 4.43143 4.45961 4.70769 4.74799 4.93628 5.04266 5.21683 5.25969 5.32999 5.35446 5.39421 5.54664 5.62552 5.65207 5.68560 5.73140 5.76410 5.84282 5.94937 5.99366 6.02499 6.11178 6.15677 6.27676 6.35384 6.45994 6.57142 6.74747 6.93325 7.12409 7.18098 7.25144 7.34918 7.45206 7.78369 7.92279 7.96885 8.34954 9.04433 9.43910 9.86756 10.64469 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.010507 B = 0.004115 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.259987 B = 6803.278531 C = 8457.808311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.148 4.148 3 C 0.083 3.917 4 O -0.304 6.304 5 C 0.104 3.896 6 C -0.194 4.194 7 C -0.058 4.058 8 C -0.091 4.091 9 C 0.512 3.488 10 O -0.606 6.606 11 N -0.419 5.419 12 C -0.323 4.323 13 H 0.091 0.909 14 C 0.048 3.952 15 N -0.862 5.862 16 Si 0.911 3.089 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.279 1.279 20 C 0.120 3.880 21 C 0.051 3.949 22 O -0.365 6.365 23 C 0.031 3.969 24 C -0.131 4.131 25 C 0.075 3.925 26 O -0.312 6.312 27 C 0.028 3.972 28 H 0.099 0.901 29 H 0.105 0.895 30 H 0.118 0.882 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.131 0.869 34 H 0.166 0.834 35 H 0.270 0.730 36 H 0.108 0.892 37 H 0.073 0.927 38 H 0.041 0.959 39 H 0.040 0.960 40 H 0.031 0.969 41 H 0.078 0.922 42 H 0.030 0.970 43 H 0.135 0.865 44 H 0.094 0.906 45 H 0.054 0.946 46 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.659 -10.463 0.529 10.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.166 4.166 3 C 0.008 3.992 4 O -0.218 6.218 5 C 0.058 3.942 6 C -0.212 4.212 7 C -0.076 4.076 8 C -0.094 4.094 9 C 0.302 3.698 10 O -0.493 6.493 11 N -0.136 5.136 12 C -0.451 4.451 13 H 0.109 0.891 14 C -0.158 4.158 15 N -0.498 5.498 16 Si 0.738 3.262 17 H -0.190 1.190 18 H -0.208 1.208 19 H -0.204 1.204 20 C -0.004 4.004 21 C -0.026 4.026 22 O -0.283 6.283 23 C -0.066 4.066 24 C -0.151 4.151 25 C 0.031 3.969 26 O -0.227 6.227 27 C -0.068 4.068 28 H 0.118 0.882 29 H 0.123 0.877 30 H 0.136 0.864 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.149 0.851 34 H 0.183 0.817 35 H 0.080 0.920 36 H 0.126 0.874 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.059 0.941 40 H 0.050 0.950 41 H 0.096 0.904 42 H 0.049 0.951 43 H 0.153 0.847 44 H 0.112 0.888 45 H 0.073 0.927 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.731 -10.432 0.928 10.616 hybrid contribution 0.356 0.203 -0.917 1.005 sum -1.376 -10.229 0.011 10.321 Atomic orbital electron populations 1.23842 0.95450 1.02375 0.99953 1.22700 0.95603 0.97977 1.00314 1.21804 0.88272 0.96442 0.92648 1.86076 1.41912 1.35514 1.58348 1.18335 0.91763 0.87330 0.96750 1.21076 1.03540 0.93668 1.02959 1.21957 0.91891 0.98600 0.95166 1.19717 0.97797 0.94469 0.97395 1.18221 0.82280 0.85197 0.84086 1.90611 1.58401 1.73628 1.26658 1.43135 1.37163 1.26087 1.07190 1.19390 1.37194 0.94409 0.94109 0.89149 1.25355 0.95284 0.95377 0.99832 1.69896 1.41086 1.02912 1.35913 0.86119 0.77748 0.79184 0.83198 1.19019 1.20820 1.20433 1.21397 0.84858 0.91028 1.03135 1.23053 0.98755 0.96658 0.84173 1.88130 1.28461 1.80237 1.31484 1.22648 0.85632 0.97218 1.01129 1.21051 1.00645 0.91829 1.01566 1.17918 0.96015 0.87740 0.95250 1.86099 1.49944 1.35164 1.51467 1.22989 0.88566 1.03021 0.92184 0.88237 0.87697 0.86408 0.91506 0.90991 0.85091 0.81685 0.92011 0.87384 0.90891 0.94122 0.94131 0.94997 0.90389 0.95120 0.84726 0.88764 0.92733 0.92941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 14.31 29.02 0.42 -1.15 16 2 C -0.15 -1.57 9.89 -36.03 -0.36 -1.92 16 3 C 0.08 1.04 5.15 36.00 0.19 1.23 16 4 O -0.30 -5.00 9.89 -33.77 -0.33 -5.34 16 5 C 0.10 1.86 6.71 -38.91 -0.26 1.60 16 6 C -0.19 -3.40 9.01 -39.52 -0.36 -3.76 16 7 C -0.06 -1.18 7.78 -39.18 -0.30 -1.48 16 8 C -0.09 -2.00 5.45 -104.97 -0.57 -2.57 16 9 C 0.51 12.72 7.32 -12.48 -0.09 12.63 16 10 O -0.61 -16.07 16.47 5.26 0.09 -15.98 16 11 N -0.42 -10.39 2.44 -116.00 -0.28 -10.68 16 12 C -0.32 -7.93 5.85 -15.00 -0.09 -8.02 16 13 H 0.09 2.22 6.49 -52.49 -0.34 1.88 16 14 C 0.05 1.16 4.93 -17.45 -0.09 1.07 16 15 N -0.86 -21.98 11.64 55.50 0.65 -21.33 16 16 Si 0.91 19.24 29.58 -169.99 -5.03 14.21 16 17 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 18 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 C 0.12 2.79 5.31 -4.04 -0.02 2.77 16 21 C 0.05 1.04 6.25 37.16 0.23 1.28 16 22 O -0.36 -7.60 10.42 -35.23 -0.37 -7.97 16 23 C 0.03 0.48 11.01 101.05 1.11 1.60 16 24 C -0.13 -2.59 8.60 -39.04 -0.34 -2.93 16 25 C 0.08 1.41 6.69 -39.18 -0.26 1.14 16 26 O -0.31 -5.34 10.28 -34.40 -0.35 -5.70 16 27 C 0.03 0.36 9.81 101.05 0.99 1.35 16 28 H 0.10 0.80 7.90 -52.49 -0.41 0.39 16 29 H 0.10 0.74 8.06 -52.48 -0.42 0.32 16 30 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 31 H 0.07 0.77 7.37 -51.93 -0.38 0.39 16 32 H 0.07 0.84 7.66 -51.93 -0.40 0.44 16 33 H 0.13 1.91 6.27 -52.49 -0.33 1.58 16 34 H 0.17 3.61 5.70 -52.49 -0.30 3.31 16 35 H 0.27 6.51 8.31 -40.82 -0.34 6.18 16 36 H 0.11 2.68 5.84 -51.93 -0.30 2.38 16 37 H 0.07 1.72 7.52 -51.93 -0.39 1.33 16 38 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.14 2.54 6.23 -52.49 -0.33 2.21 16 44 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.05 0.69 7.65 -51.93 -0.40 0.29 16 46 H 0.05 0.65 7.67 -51.93 -0.40 0.25 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -30.59 385.67 -6.12 -36.71 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.50 Total: 7.42 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 0.20 Total: 2.84 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: 0.36 Total: -32.01 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -0.97 Total: -34.99 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -5.03 Total: 14.21 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -30.59 -6.12 -36.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457181344.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.902 kcal (2) G-P(sol) polarization free energy of solvation -30.594 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds