Wall clock time and date at job start Tue Mar 31 2020 19:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99675 * 2 1 4 4 C 1.53006 * 109.46875 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47130 * 65.00199 * 4 3 2 6 6 C 1.37099 * 120.00066 * 264.47325 * 5 4 3 7 7 H 1.08000 * 120.00504 * 138.26838 * 6 5 4 8 8 C 1.38950 * 119.99902 * 318.26558 * 6 5 4 9 9 N 1.31415 * 119.99928 * 341.88853 * 8 6 5 10 10 Si 1.86793 * 120.00359 * 161.89007 * 8 6 5 11 11 H 1.48507 * 109.47340 * 89.99830 * 10 8 6 12 12 H 1.48497 * 109.47488 * 210.00099 * 10 8 6 13 13 H 1.48494 * 109.47024 * 330.00193 * 10 8 6 14 14 C 1.34783 * 120.00231 * 84.47112 * 5 4 3 15 15 O 1.21290 * 119.99489 * 359.97438 * 14 5 4 16 16 C 1.50698 * 120.00221 * 180.02562 * 14 5 4 17 17 C 1.52999 * 109.47424 * 180.02562 * 16 14 5 18 18 C 1.50698 * 109.47424 * 180.02562 * 17 16 14 19 19 C 1.38365 * 119.84547 * 270.27593 * 18 17 16 20 20 C 1.37947 * 120.15034 * 180.27770 * 19 18 17 21 21 C 1.39626 * 119.84458 * 359.44735 * 20 19 18 22 22 C 1.47719 * 120.15323 * 180.29944 * 21 20 19 23 23 O 1.21472 * 119.99965 * 359.97438 * 22 21 20 24 24 O 1.34714 * 120.00517 * 179.97438 * 22 21 20 25 25 C 1.45196 * 117.00102 * 179.97438 * 24 22 21 26 26 C 1.39634 * 119.70044 * 0.27026 * 21 20 19 27 27 C 1.37938 * 119.84787 * 0.02562 * 26 21 20 28 28 H 1.08998 * 109.47030 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47186 * 300.00079 * 1 2 3 30 30 H 1.09002 * 109.47768 * 59.99456 * 1 2 3 31 31 H 1.09000 * 109.47448 * 60.00422 * 3 2 1 32 32 H 1.08998 * 109.47505 * 300.00376 * 3 2 1 33 33 H 1.08996 * 109.46852 * 305.00159 * 4 3 2 34 34 H 1.09002 * 109.46890 * 185.00260 * 4 3 2 35 35 H 0.97002 * 120.00406 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.47027 * 59.99559 * 16 14 5 37 37 H 1.09003 * 109.46746 * 299.99872 * 16 14 5 38 38 H 1.08997 * 109.47013 * 59.99650 * 17 16 14 39 39 H 1.09003 * 109.46412 * 300.00088 * 17 16 14 40 40 H 1.08001 * 119.93180 * 0.02562 * 19 18 17 41 41 H 1.07999 * 120.08032 * 179.71735 * 20 19 18 42 42 H 1.09005 * 109.47517 * 59.99823 * 25 24 22 43 43 H 1.09002 * 109.47435 * 180.02562 * 25 24 22 44 44 H 1.09001 * 109.47673 * 300.00126 * 25 24 22 45 45 H 1.08004 * 120.07466 * 180.02562 * 26 21 20 46 46 H 1.08006 * 119.92531 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.2060 -0.7860 -1.3048 7 1 3.8776 -1.3572 -2.1605 8 6 4.8621 -1.4198 -0.2568 9 7 5.5680 -0.7149 0.5987 10 14 4.7409 -3.2737 -0.0637 11 1 5.8430 -3.9232 -0.8182 12 1 4.8483 -3.6299 1.3739 13 1 3.4352 -3.7422 -0.5935 14 6 4.1541 1.3216 -2.3535 15 8 3.9498 2.5162 -2.3074 16 6 4.6064 0.6835 -3.6416 17 6 4.7307 1.7558 -4.7258 18 6 5.1823 1.1177 -6.0142 19 6 6.5335 1.0029 -6.2890 20 6 6.9539 0.4250 -7.4690 21 6 6.0125 -0.0550 -8.3816 22 6 6.4552 -0.6811 -9.6442 23 8 7.6406 -0.7787 -9.8907 24 8 5.5444 -1.1437 -10.5224 25 6 6.0515 -1.7461 -11.7423 26 6 4.6506 0.0588 -8.0951 27 6 4.2441 0.6444 -6.9142 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8514 0.5682 0.8409 34 1 3.9784 2.1766 0.0890 35 1 6.0264 -1.1573 1.3302 36 1 3.8771 -0.0648 -3.9520 37 1 5.5747 0.2064 -3.4903 38 1 5.4601 2.5038 -4.4151 39 1 3.7625 2.2333 -4.8771 40 1 7.2608 1.3702 -5.5801 41 1 8.0088 0.3401 -7.6844 42 1 6.6778 -2.6023 -11.4916 43 1 5.2157 -2.0752 -12.3597 44 1 6.6418 -1.0127 -12.2916 45 1 3.9172 -0.3109 -8.7965 46 1 3.1910 0.7334 -6.6915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457184594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:25 Heat of formation + Delta-G solvation = -143.375728 kcal Electronic energy + Delta-G solvation = -28343.225987 eV Core-core repulsion = 24198.262263 eV Total energy + Delta-G solvation = -4144.963723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.67141 -39.20402 -38.53503 -36.99199 -36.57603 -34.77020 -33.68644 -31.57931 -31.06488 -30.33738 -29.01890 -27.77154 -25.88656 -25.12569 -24.42879 -22.72636 -22.53891 -21.38437 -20.44040 -19.00134 -18.13706 -17.24486 -16.87388 -16.51659 -16.23808 -15.54152 -15.49256 -15.20684 -14.97865 -14.72827 -14.39691 -14.36128 -14.16650 -13.85975 -13.65955 -13.54093 -13.34191 -12.95734 -12.53246 -12.34148 -12.32430 -12.01197 -11.51534 -11.47705 -11.29037 -11.15697 -11.12036 -11.02631 -11.01247 -10.96675 -10.68180 -10.59535 -10.35994 -10.33021 -10.03406 -9.13827 -9.02218 -8.98402 -8.81844 -8.38199 -7.44599 -6.32770 -4.03821 0.64814 1.35921 2.45100 2.51333 3.17036 3.26786 3.32529 3.74321 3.91229 4.18342 4.48649 4.54977 4.71045 4.80714 4.85634 4.92462 4.92893 5.01971 5.15843 5.23959 5.35006 5.37976 5.64343 5.68790 5.70813 5.72756 5.81755 5.95336 5.97883 6.00340 6.05156 6.08742 6.20617 6.23578 6.30117 6.36098 6.41878 6.49501 6.69597 6.74121 6.78648 6.86702 7.23644 7.49510 7.58104 7.82602 8.03367 8.39333 9.14025 9.52641 9.95856 10.71542 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013168 B = 0.002585 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.895614 B =10830.713915 C =11482.666926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.052 3.948 4 C 0.121 3.879 5 N -0.429 5.429 6 C -0.325 4.325 7 H 0.084 0.916 8 C 0.050 3.950 9 N -0.865 5.865 10 Si 0.913 3.087 11 H -0.279 1.279 12 H -0.283 1.283 13 H -0.268 1.268 14 C 0.471 3.529 15 O -0.613 6.613 16 C -0.110 4.110 17 C -0.073 4.073 18 C -0.027 4.027 19 C -0.129 4.129 20 C -0.050 4.050 21 C -0.145 4.145 22 C 0.512 3.488 23 O -0.511 6.511 24 O -0.356 6.356 25 C 0.037 3.963 26 C -0.059 4.059 27 C -0.132 4.132 28 H 0.077 0.923 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.038 0.962 32 H 0.042 0.958 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.268 0.732 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.063 0.937 43 H 0.101 0.899 44 H 0.062 0.938 45 H 0.135 0.865 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.417 -0.276 -14.373 14.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.026 4.026 4 C -0.003 4.003 5 N -0.146 5.146 6 C -0.453 4.453 7 H 0.102 0.898 8 C -0.156 4.156 9 N -0.502 5.502 10 Si 0.739 3.261 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.193 1.193 14 C 0.260 3.740 15 O -0.501 6.501 16 C -0.150 4.150 17 C -0.110 4.110 18 C -0.027 4.027 19 C -0.146 4.146 20 C -0.069 4.069 21 C -0.147 4.147 22 C 0.358 3.642 23 O -0.401 6.401 24 O -0.273 6.273 25 C -0.057 4.057 26 C -0.077 4.077 27 C -0.150 4.150 28 H 0.096 0.904 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.123 0.877 34 H 0.087 0.913 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.107 0.893 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.082 0.918 43 H 0.120 0.880 44 H 0.081 0.919 45 H 0.153 0.847 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.939 0.036 -14.247 14.547 hybrid contribution -0.167 -0.984 0.105 1.004 sum -3.107 -0.948 -14.141 14.510 Atomic orbital electron populations 1.22643 0.83428 1.01722 0.98833 1.88131 1.17374 1.27800 1.95043 1.23054 0.96626 0.84263 0.98664 1.21341 0.89022 0.98874 0.91103 1.43274 1.56495 1.07345 1.07495 1.19220 1.36564 0.82138 1.07381 0.89792 1.25330 0.93734 0.99746 0.96768 1.69922 1.27660 1.36648 1.15954 0.86171 0.78827 0.83411 0.77642 1.20501 1.20890 1.19266 1.20444 0.80648 0.86233 0.86626 1.90511 1.57830 1.15488 1.86235 1.21282 1.03510 0.97674 0.92501 1.20524 1.02866 0.97678 0.89959 1.20482 0.93261 0.93431 0.95556 1.21114 0.95824 1.00789 0.96915 1.21227 0.99534 0.93890 0.92211 1.18997 0.94829 1.07236 0.93591 1.21322 0.83976 0.75167 0.83768 1.90819 1.18091 1.54364 1.76818 1.86550 1.39710 1.70604 1.30403 1.23266 1.00993 0.97944 0.83487 1.21400 0.94360 0.95326 0.96651 1.21116 1.00201 0.99857 0.93855 0.90435 0.95165 0.95007 0.94356 0.94007 0.87689 0.91255 0.92177 0.90251 0.89252 0.90114 0.90347 0.84704 0.84736 0.91827 0.88019 0.91901 0.84727 0.84993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.60 16 2 O -0.37 -7.64 10.44 -35.23 -0.37 -8.01 16 3 C 0.05 1.06 6.24 37.16 0.23 1.29 16 4 C 0.12 2.83 5.26 -4.04 -0.02 2.81 16 5 N -0.43 -10.52 2.45 -114.81 -0.28 -10.80 16 6 C -0.32 -8.13 8.29 -14.93 -0.12 -8.25 16 7 H 0.08 2.04 7.21 -52.49 -0.38 1.66 16 8 C 0.05 1.26 4.95 -17.47 -0.09 1.17 16 9 N -0.87 -22.77 11.66 55.50 0.65 -22.13 16 10 Si 0.91 19.84 29.59 -169.99 -5.03 14.81 16 11 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 14 C 0.47 10.93 7.60 -10.98 -0.08 10.85 16 15 O -0.61 -15.23 15.66 5.55 0.09 -15.15 16 16 C -0.11 -2.06 4.41 -27.88 -0.12 -2.19 16 17 C -0.07 -1.14 4.62 -27.88 -0.13 -1.27 16 18 C -0.03 -0.37 5.14 -104.53 -0.54 -0.91 16 19 C -0.13 -1.67 9.68 -39.64 -0.38 -2.05 16 20 C -0.05 -0.64 9.60 -39.17 -0.38 -1.02 16 21 C -0.15 -1.86 5.87 -104.98 -0.62 -2.48 16 22 C 0.51 6.70 7.90 34.60 0.27 6.98 16 23 O -0.51 -7.76 16.14 -19.24 -0.31 -8.07 16 24 O -0.36 -3.93 9.82 -40.53 -0.40 -4.33 16 25 C 0.04 0.28 10.56 101.05 1.07 1.35 16 26 C -0.06 -0.69 9.62 -39.17 -0.38 -1.06 16 27 C -0.13 -1.62 9.68 -39.64 -0.38 -2.00 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.11 2.66 5.81 -51.93 -0.30 2.35 16 34 H 0.07 1.64 7.59 -51.93 -0.39 1.24 16 35 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 36 H 0.08 1.43 7.71 -51.93 -0.40 1.03 16 37 H 0.09 1.72 8.10 -51.93 -0.42 1.30 16 38 H 0.08 1.31 8.04 -51.93 -0.42 0.90 16 39 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 40 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.13 1.61 7.65 -52.49 -0.40 1.21 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.13 1.29 7.61 -52.48 -0.40 0.89 16 46 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 LS Contribution 394.81 15.07 5.95 5.95 Total: -1.00 -31.02 394.81 -7.15 -38.17 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -6.89 Total: 4.73 kcal Atomic # 6 Polarization: 5.37 SS G_CDS: -0.56 Total: 4.82 kcal Atomic # 7 Polarization: -33.29 SS G_CDS: 0.37 Total: -32.92 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.99 Total: -35.56 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.03 Total: 14.81 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.02 -7.15 -38.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457184594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.204 kcal (2) G-P(sol) polarization free energy of solvation -31.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds