Wall clock time and date at job start Tue Mar 31 2020 19:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42898 * 113.99675 * 2 1 4 4 C 1.53006 * 109.46875 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47130 * 65.00199 * 4 3 2 6 6 C 1.37099 * 120.00066 * 264.47325 * 5 4 3 7 7 H 1.08000 * 120.00504 * 138.26838 * 6 5 4 8 8 C 1.38950 * 119.99902 * 318.26558 * 6 5 4 9 9 N 1.31415 * 119.99928 * 341.88853 * 8 6 5 10 10 Si 1.86793 * 120.00359 * 161.89007 * 8 6 5 11 11 H 1.48507 * 109.47340 * 89.99830 * 10 8 6 12 12 H 1.48497 * 109.47488 * 210.00099 * 10 8 6 13 13 H 1.48494 * 109.47024 * 330.00193 * 10 8 6 14 14 C 1.34783 * 120.00231 * 84.47112 * 5 4 3 15 15 O 1.21290 * 119.99489 * 359.97438 * 14 5 4 16 16 C 1.50698 * 120.00221 * 180.02562 * 14 5 4 17 17 C 1.52999 * 109.47424 * 180.02562 * 16 14 5 18 18 C 1.50698 * 109.47424 * 180.02562 * 17 16 14 19 19 C 1.38365 * 119.84547 * 270.27593 * 18 17 16 20 20 C 1.37947 * 120.15034 * 180.27770 * 19 18 17 21 21 C 1.39626 * 119.84458 * 359.44735 * 20 19 18 22 22 C 1.47719 * 120.15323 * 180.29944 * 21 20 19 23 23 O 1.21472 * 119.99965 * 359.97438 * 22 21 20 24 24 O 1.34714 * 120.00517 * 179.97438 * 22 21 20 25 25 C 1.45196 * 117.00102 * 179.97438 * 24 22 21 26 26 C 1.39634 * 119.70044 * 0.27026 * 21 20 19 27 27 C 1.37938 * 119.84787 * 0.02562 * 26 21 20 28 28 H 1.08998 * 109.47030 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47186 * 300.00079 * 1 2 3 30 30 H 1.09002 * 109.47768 * 59.99456 * 1 2 3 31 31 H 1.09000 * 109.47448 * 60.00422 * 3 2 1 32 32 H 1.08998 * 109.47505 * 300.00376 * 3 2 1 33 33 H 1.08996 * 109.46852 * 305.00159 * 4 3 2 34 34 H 1.09002 * 109.46890 * 185.00260 * 4 3 2 35 35 H 0.97002 * 120.00406 * 180.02562 * 9 8 6 36 36 H 1.09004 * 109.47027 * 59.99559 * 16 14 5 37 37 H 1.09003 * 109.46746 * 299.99872 * 16 14 5 38 38 H 1.08997 * 109.47013 * 59.99650 * 17 16 14 39 39 H 1.09003 * 109.46412 * 300.00088 * 17 16 14 40 40 H 1.08001 * 119.93180 * 0.02562 * 19 18 17 41 41 H 1.07999 * 120.08032 * 179.71735 * 20 19 18 42 42 H 1.09005 * 109.47517 * 59.99823 * 25 24 22 43 43 H 1.09002 * 109.47435 * 180.02562 * 25 24 22 44 44 H 1.09001 * 109.47673 * 300.00126 * 25 24 22 45 45 H 1.08004 * 120.07466 * 180.02562 * 26 21 20 46 46 H 1.08006 * 119.92531 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9756 0.5645 -1.2527 6 6 4.2060 -0.7860 -1.3048 7 1 3.8776 -1.3572 -2.1605 8 6 4.8621 -1.4198 -0.2568 9 7 5.5680 -0.7149 0.5987 10 14 4.7409 -3.2737 -0.0637 11 1 5.8430 -3.9232 -0.8182 12 1 4.8483 -3.6299 1.3739 13 1 3.4352 -3.7422 -0.5935 14 6 4.1541 1.3216 -2.3535 15 8 3.9498 2.5162 -2.3074 16 6 4.6064 0.6835 -3.6416 17 6 4.7307 1.7558 -4.7258 18 6 5.1823 1.1177 -6.0142 19 6 6.5335 1.0029 -6.2890 20 6 6.9539 0.4250 -7.4690 21 6 6.0125 -0.0550 -8.3816 22 6 6.4552 -0.6811 -9.6442 23 8 7.6406 -0.7787 -9.8907 24 8 5.5444 -1.1437 -10.5224 25 6 6.0515 -1.7461 -11.7423 26 6 4.6506 0.0588 -8.0951 27 6 4.2441 0.6444 -6.9142 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3635 0.5139 -0.8899 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8899 33 1 3.8514 0.5682 0.8409 34 1 3.9784 2.1766 0.0890 35 1 6.0264 -1.1573 1.3302 36 1 3.8771 -0.0648 -3.9520 37 1 5.5747 0.2064 -3.4903 38 1 5.4601 2.5038 -4.4151 39 1 3.7625 2.2333 -4.8771 40 1 7.2608 1.3702 -5.5801 41 1 8.0088 0.3401 -7.6844 42 1 6.6778 -2.6023 -11.4916 43 1 5.2157 -2.0752 -12.3597 44 1 6.6418 -1.0127 -12.2916 45 1 3.9172 -0.3109 -8.7965 46 1 3.1910 0.7334 -6.6915 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457184594.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:22:24 Heat of formation + Delta-G solvation = -159.829066 kcal Electronic energy + Delta-G solvation = -28343.939457 eV Core-core repulsion = 24198.262263 eV Total energy + Delta-G solvation = -4145.677194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.63227 -40.64839 -39.88752 -38.54348 -37.52845 -36.58393 -34.98069 -33.48561 -32.03903 -31.71997 -30.45487 -28.58911 -27.26389 -26.73994 -25.91075 -23.90642 -23.65279 -22.79023 -21.51320 -20.84823 -19.07822 -18.64778 -18.19774 -17.89495 -17.40011 -17.19447 -16.95479 -16.47030 -16.32022 -16.05767 -15.91158 -15.71995 -15.57435 -15.28801 -14.68077 -14.51201 -14.40970 -14.21099 -13.88078 -13.76754 -13.57386 -13.20900 -13.04034 -12.91099 -12.86958 -12.66827 -12.58583 -12.42918 -12.32474 -12.16946 -12.06992 -11.83482 -11.77084 -11.71138 -11.62848 -10.95938 -10.53264 -10.32081 -9.97881 -9.79622 -9.35888 -8.23630 -5.99716 -0.36323 0.40017 1.44165 1.45196 1.51141 1.61858 1.67048 2.09001 2.38467 2.73163 2.98161 3.05266 3.22954 3.64254 3.82984 3.91367 4.00408 4.23439 4.28239 4.30408 4.32619 4.33495 4.34709 4.43186 4.51942 4.54607 4.55977 4.63581 4.65962 4.69982 4.76755 4.84002 4.87276 4.96489 5.03133 5.13560 5.16957 5.26994 5.30985 5.35180 5.39196 5.55739 5.65040 5.86781 6.10684 6.42753 6.47024 6.63135 7.21898 7.66088 8.08512 8.81201 Molecular weight = 335.16amu Principal moments of inertia in cm(-1) A = 0.013168 B = 0.002585 C = 0.002438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.895614 B =10830.713915 C =11482.666926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.397 6.397 3 C 0.065 3.935 4 C 0.118 3.882 5 N -0.442 5.442 6 C -0.332 4.332 7 H 0.090 0.910 8 C 0.009 3.991 9 N -0.897 5.897 10 Si 0.974 3.026 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.264 1.264 14 C 0.459 3.541 15 O -0.635 6.635 16 C -0.100 4.100 17 C -0.059 4.059 18 C -0.038 4.038 19 C -0.133 4.133 20 C -0.057 4.057 21 C -0.154 4.154 22 C 0.514 3.486 23 O -0.539 6.539 24 O -0.356 6.356 25 C 0.029 3.971 26 C -0.051 4.051 27 C -0.130 4.130 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.040 0.960 31 H 0.065 0.935 32 H 0.034 0.966 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.269 0.731 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.061 0.939 43 H 0.136 0.864 44 H 0.063 0.937 45 H 0.159 0.841 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.955 -1.517 -15.847 16.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.013 4.013 4 C -0.006 4.006 5 N -0.159 5.159 6 C -0.460 4.460 7 H 0.107 0.893 8 C -0.193 4.193 9 N -0.535 5.535 10 Si 0.799 3.201 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.188 1.188 14 C 0.250 3.750 15 O -0.524 6.524 16 C -0.139 4.139 17 C -0.097 4.097 18 C -0.038 4.038 19 C -0.151 4.151 20 C -0.075 4.075 21 C -0.155 4.155 22 C 0.361 3.639 23 O -0.431 6.431 24 O -0.272 6.272 25 C -0.064 4.064 26 C -0.069 4.069 27 C -0.148 4.148 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.097 0.903 40 H 0.157 0.843 41 H 0.155 0.845 42 H 0.080 0.920 43 H 0.154 0.846 44 H 0.082 0.918 45 H 0.176 0.824 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.502 -1.209 -15.738 16.414 hybrid contribution 0.267 -0.577 0.506 0.813 sum -4.235 -1.786 -15.232 15.910 Atomic orbital electron populations 1.22887 0.80621 1.03335 1.00275 1.88060 1.20476 1.27795 1.95316 1.22809 0.94402 0.84599 0.99495 1.21273 0.91414 0.97524 0.90391 1.43512 1.56849 1.07552 1.08035 1.19446 1.36364 0.82465 1.07692 0.89277 1.26066 0.93323 1.03510 0.96437 1.70024 1.28673 1.38221 1.16603 0.85232 0.78934 0.78681 0.77301 1.19830 1.21125 1.18805 1.21195 0.79976 0.86144 0.87684 1.90482 1.58621 1.16451 1.86799 1.21223 1.03031 0.98475 0.91217 1.20323 1.02681 0.96564 0.90087 1.20317 0.93822 0.94589 0.95081 1.21189 0.95869 1.00812 0.97180 1.21296 0.99919 0.94035 0.92226 1.19175 0.95497 1.07187 0.93616 1.21380 0.83775 0.74756 0.84033 1.90805 1.19217 1.55606 1.77467 1.86535 1.39254 1.70274 1.31103 1.23603 1.02630 0.97729 0.82475 1.21610 0.94227 0.94384 0.96640 1.21312 1.00819 0.99085 0.93570 0.88812 0.93080 0.94120 0.91739 0.94743 0.89743 0.92561 0.92201 0.89220 0.89893 0.91172 0.90308 0.84260 0.84465 0.91983 0.84616 0.91791 0.82359 0.83254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.98 16 2 O -0.40 -16.23 10.44 -148.98 -1.56 -17.79 16 3 C 0.06 2.62 6.24 71.98 0.45 3.07 16 4 C 0.12 5.67 5.26 86.38 0.45 6.12 16 5 N -0.44 -21.97 2.45 -635.54 -1.56 -23.53 16 6 C -0.33 -16.61 8.29 84.04 0.70 -15.91 16 7 H 0.09 4.28 7.21 -2.91 -0.02 4.26 16 8 C 0.01 0.47 4.95 84.93 0.42 0.89 16 9 N -0.90 -48.00 11.66 21.66 0.25 -47.75 16 10 Si 0.97 40.38 29.59 68.60 2.03 42.41 16 11 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 12 H -0.29 -11.85 7.11 99.48 0.71 -11.14 16 13 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 14 C 0.46 21.57 7.60 87.66 0.67 22.23 16 15 O -0.63 -32.01 15.66 -3.06 -0.05 -32.06 16 16 C -0.10 -3.73 4.41 29.85 0.13 -3.60 16 17 C -0.06 -1.83 4.62 29.85 0.14 -1.69 16 18 C -0.04 -0.99 5.14 -19.80 -0.10 -1.09 16 19 C -0.13 -3.36 9.68 22.23 0.22 -3.15 16 20 C -0.06 -1.41 9.60 22.54 0.22 -1.19 16 21 C -0.15 -3.71 5.87 -20.10 -0.12 -3.83 16 22 C 0.51 12.79 7.90 70.33 0.56 13.35 16 23 O -0.54 -16.04 16.14 19.93 0.32 -15.72 16 24 O -0.36 -7.10 9.82 -56.24 -0.55 -7.65 16 25 C 0.03 0.38 10.56 113.37 1.20 1.58 16 26 C -0.05 -1.05 9.62 22.54 0.22 -0.84 16 27 C -0.13 -2.89 9.68 22.23 0.22 -2.68 16 28 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 29 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 4.40 5.81 -2.39 -0.01 4.38 16 34 H 0.06 2.76 7.59 -2.39 -0.02 2.74 16 35 H 0.27 13.65 8.31 -92.71 -0.77 12.88 16 36 H 0.09 3.15 7.71 -2.38 -0.02 3.13 16 37 H 0.08 3.20 8.10 -2.39 -0.02 3.18 16 38 H 0.07 2.30 8.04 -2.39 -0.02 2.28 16 39 H 0.08 2.42 8.04 -2.39 -0.02 2.41 16 40 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 41 H 0.14 3.27 7.65 -2.91 -0.02 3.25 16 42 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.14 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 45 H 0.16 2.51 7.61 -2.91 -0.02 2.49 16 46 H 0.15 2.78 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -66.83 394.81 6.46 -60.36 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: 0.97 Total: 26.48 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: 6.60 Total: 15.23 kcal Atomic # 7 Polarization: -69.96 SS G_CDS: -1.31 Total: -71.27 kcal Atomic # 8 Polarization: -71.39 SS G_CDS: -1.83 Total: -73.22 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Total: -66.83 6.46 -60.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457184594.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.466 kcal (2) G-P(sol) polarization free energy of solvation -66.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds